Query gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 701
No_of_seqs 154 out of 4523
Neff 8.0
Searched_HMMs 39220
Date Tue May 24 10:16:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780264.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00007 elongation factor G; 100.0 0 0 1479.0 62.1 692 1-696 1-693 (693)
2 PRK12739 elongation factor G; 100.0 0 0 1457.7 63.5 692 1-697 1-692 (693)
3 PRK13351 elongation factor G; 100.0 0 0 1409.4 62.2 685 4-694 2-687 (687)
4 PRK12740 elongation factor G; 100.0 0 0 1410.3 59.9 670 16-693 1-670 (670)
5 COG0480 FusA Translation elong 100.0 0 0 1370.8 59.7 693 1-700 1-696 (697)
6 TIGR00484 EF-G translation elo 100.0 0 0 1363.3 36.5 696 1-696 1-704 (705)
7 KOG0465 consensus 100.0 0 0 1226.9 42.2 682 5-694 34-720 (721)
8 PRK07560 elongation factor EF- 100.0 0 0 1211.8 51.7 652 5-701 15-717 (730)
9 KOG0469 consensus 100.0 0 0 1086.5 25.7 672 7-700 16-827 (842)
10 KOG0468 consensus 100.0 0 0 947.4 31.0 675 6-692 124-915 (971)
11 KOG0467 consensus 100.0 0 0 934.2 24.9 671 4-696 3-846 (887)
12 KOG0464 consensus 100.0 0 0 915.1 29.7 675 5-696 32-750 (753)
13 TIGR00490 aEF-2 translation el 100.0 0 0 902.8 31.8 646 5-700 14-720 (724)
14 PRK00741 prfC peptide chain re 100.0 0 0 829.2 34.0 456 5-487 5-467 (526)
15 PRK10218 GTP-binding protein; 100.0 0 0 784.1 36.5 462 7-687 2-480 (607)
16 PRK05433 GTP-binding protein L 100.0 0 0 783.9 32.5 466 6-682 3-481 (601)
17 TIGR01393 lepA GTP-binding pro 100.0 0 0 774.7 27.9 465 8-682 1-480 (598)
18 TIGR01394 TypA_BipA GTP-bindin 100.0 0 0 777.0 23.9 469 10-688 1-491 (609)
19 KOG0462 consensus 100.0 0 0 654.3 30.2 468 4-682 54-533 (650)
20 COG1217 TypA Predicted membran 100.0 0 0 630.6 28.1 462 7-687 2-479 (603)
21 COG0481 LepA Membrane GTPase L 100.0 0 0 628.3 29.8 468 4-682 3-483 (603)
22 COG4108 PrfC Peptide chain rel 100.0 0 0 613.9 21.8 449 6-487 8-469 (528)
23 TIGR00503 prfC peptide chain r 100.0 0 0 581.4 11.7 447 6-488 7-472 (530)
24 cd04170 EF-G_bact Elongation f 100.0 0 0 561.3 23.0 268 12-287 1-268 (268)
25 cd01886 EF-G Elongation factor 100.0 0 0 546.0 23.8 270 12-287 1-270 (270)
26 cd04169 RF3 RF3 subfamily. Pe 100.0 0 0 516.4 19.9 263 9-287 1-267 (267)
27 cd04168 TetM_like Tet(M)-like 100.0 0 0 477.1 20.8 237 12-287 1-237 (237)
28 cd01885 EF2 EF2 (for archaea a 100.0 0 0 408.0 17.8 149 11-161 1-154 (222)
29 cd04167 Snu114p Snu114p subfam 100.0 0 0 401.4 17.6 151 11-161 1-152 (213)
30 cd01891 TypA_BipA TypA (tyrosi 100.0 0 0 363.6 18.1 145 9-160 1-145 (194)
31 cd01890 LepA LepA subfamily. 100.0 0 0 355.7 19.0 179 11-287 1-179 (179)
32 cd00881 GTP_translation_factor 100.0 0 0 334.0 17.6 188 12-287 1-189 (189)
33 cd01884 EF_Tu EF-Tu subfamily. 100.0 5E-44 0 301.4 14.8 129 11-146 3-132 (195)
34 pfam00009 GTP_EFTU Elongation 100.0 4E-43 0 295.7 16.5 184 8-286 1-185 (185)
35 PRK12736 elongation factor Tu; 100.0 1.4E-42 0 292.2 16.7 270 10-399 12-298 (394)
36 PRK12317 elongation factor 1-a 100.0 1.2E-41 0 286.0 21.5 280 1-402 1-315 (426)
37 PRK00049 elongation factor Tu; 100.0 1.3E-41 0 286.0 19.6 269 11-399 13-301 (397)
38 PTZ00336 elongation factor 1-a 100.0 2.1E-41 0 284.6 19.9 278 11-399 8-319 (449)
39 cd01889 SelB_euk SelB subfamil 100.0 6.2E-42 0 288.0 16.4 124 12-146 2-134 (192)
40 PRK12735 elongation factor Tu; 100.0 1.5E-41 0 285.5 18.0 270 10-399 12-300 (396)
41 CHL00071 tufA elongation facto 100.0 6.4E-41 1.4E-45 281.5 18.1 287 10-399 12-308 (409)
42 PTZ00141 elongation factor 1 a 100.0 1.6E-40 4.2E-45 278.9 19.8 282 10-399 7-317 (443)
43 PRK05124 cysN sulfate adenylyl 100.0 2.7E-40 7E-45 277.5 20.7 277 8-402 25-332 (475)
44 PRK04000 translation initiatio 100.0 5.7E-40 1.4E-44 275.4 18.5 260 11-399 9-318 (410)
45 COG5256 TEF1 Translation elong 100.0 1.2E-37 3.1E-42 260.5 19.4 283 11-404 8-322 (428)
46 PRK10512 selenocysteinyl-tRNA- 100.0 1.8E-37 4.7E-42 259.3 19.7 252 13-399 3-261 (615)
47 PRK05506 bifunctional sulfate 100.0 4.1E-37 1E-41 257.0 20.8 278 7-402 4-311 (613)
48 TIGR00475 selB selenocysteine- 100.0 6.3E-38 1.6E-42 262.3 13.4 260 12-397 2-268 (627)
49 cd01883 EF1_alpha Eukaryotic e 100.0 3.5E-37 8.9E-42 257.5 15.1 132 12-148 1-153 (219)
50 PRK12312 infB translation init 100.0 3.5E-36 9E-41 251.0 19.0 248 12-394 119-367 (610)
51 CHL00189 infB translation init 100.0 8.6E-36 2.2E-40 248.5 19.1 252 12-394 274-526 (770)
52 TIGR00483 EF-1_alpha translati 100.0 4.2E-36 1.1E-40 250.6 14.9 368 1-486 1-411 (445)
53 PRK04004 translation initiatio 100.0 3.2E-35 8.2E-40 244.9 17.2 290 12-392 7-322 (592)
54 KOG0460 consensus 100.0 4.7E-36 1.2E-40 250.2 12.7 267 11-399 55-342 (449)
55 PTZ00327 eukaryotic translatio 100.0 1.2E-34 3E-39 241.3 18.4 264 10-399 37-355 (460)
56 cd04166 CysN_ATPS CysN_ATPS su 100.0 3.2E-35 8.2E-40 244.9 15.2 132 12-148 1-146 (208)
57 COG0050 TufB GTPases - transla 100.0 2.2E-35 5.6E-40 245.9 14.2 270 8-398 10-297 (394)
58 PRK05306 infB translation init 100.0 4.4E-34 1.1E-38 237.6 19.9 249 12-394 343-592 (839)
59 cd01888 eIF2_gamma eIF2-gamma 100.0 4.5E-35 1.1E-39 244.0 11.6 119 12-145 2-150 (203)
60 COG0532 InfB Translation initi 100.0 4.7E-31 1.2E-35 218.1 15.1 246 12-389 7-252 (509)
61 KOG0458 consensus 100.0 4.2E-30 1.1E-34 212.0 18.5 273 9-396 176-488 (603)
62 KOG1145 consensus 100.0 2.4E-30 6.2E-35 213.5 15.9 248 12-393 155-403 (683)
63 cd04171 SelB SelB subfamily. 100.0 2.1E-30 5.3E-35 214.0 14.4 115 13-146 3-118 (164)
64 COG3276 SelB Selenocysteine-sp 100.0 2.4E-30 6.2E-35 213.5 14.7 251 12-399 2-257 (447)
65 TIGR00485 EF-Tu translation el 100.0 5.2E-30 1.3E-34 211.4 13.3 273 9-400 11-299 (394)
66 cd01434 EFG_mtEFG1_IV EFG_mtEF 100.0 1.1E-28 2.8E-33 202.9 12.4 116 487-602 1-116 (116)
67 COG2895 CysN GTPases - Sulfate 100.0 5.2E-28 1.3E-32 198.6 15.2 345 9-484 5-382 (431)
68 TIGR02034 CysN sulfate adenyly 100.0 1.8E-28 4.5E-33 201.6 12.6 350 13-485 3-382 (411)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 1.1E-27 2.8E-32 196.5 15.2 123 12-154 2-124 (168)
70 pfam03764 EFG_IV Elongation fa 100.0 3.6E-28 9.2E-33 199.6 11.9 119 483-602 1-120 (120)
71 COG5257 GCD11 Translation init 100.0 5.5E-26 1.4E-30 185.6 20.3 343 1-485 1-386 (415)
72 cd01680 EFG_like_IV Elongation 99.9 5.3E-27 1.3E-31 192.1 12.5 116 487-602 1-116 (116)
73 cd01683 EF2_IV_snRNP EF-2_doma 99.9 1.4E-27 3.6E-32 195.8 9.1 100 512-612 73-178 (178)
74 cd01684 Tet_like_IV EF-G_domai 99.9 6.9E-27 1.7E-31 191.4 12.3 115 485-602 1-115 (115)
75 KOG0461 consensus 99.9 7.4E-26 1.9E-30 184.8 13.6 251 11-382 8-267 (522)
76 cd01681 aeEF2_snRNP_like_IV Th 99.9 2.3E-26 5.8E-31 188.0 9.6 100 511-611 72-177 (177)
77 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.2E-25 3E-30 183.5 12.3 197 13-287 2-224 (224)
78 smart00838 EFG_C Elongation fa 99.9 1.1E-25 2.8E-30 183.7 9.5 85 605-689 1-85 (85)
79 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.7E-25 4.3E-30 182.5 8.6 78 607-684 1-80 (80)
80 COG5258 GTPBP1 GTPase [General 99.9 5.3E-24 1.4E-28 172.8 13.7 278 10-395 117-434 (527)
81 cd01693 mtEFG2_like_IV mtEF-G2 99.9 2.7E-24 6.8E-29 174.8 11.9 117 485-602 1-120 (120)
82 TIGR00491 aIF-2 translation in 99.9 2E-23 5E-28 169.2 16.3 384 23-523 563-967 (1145)
83 cd04096 eEF2_snRNP_like_C eEF2 99.9 1.9E-24 4.7E-29 175.8 9.9 78 607-684 1-80 (80)
84 cd04097 mtEFG1_C mtEFG1_C: C-t 99.9 1.7E-23 4.2E-28 169.7 9.4 78 607-684 1-78 (78)
85 KOG0459 consensus 99.9 6.1E-24 1.5E-28 172.5 6.4 290 8-402 77-394 (501)
86 KOG1144 consensus 99.9 2.5E-22 6.2E-27 162.2 9.9 294 7-393 470-790 (1064)
87 pfam00679 EFG_C Elongation fac 99.9 2.6E-22 6.7E-27 162.0 9.5 87 604-690 1-88 (89)
88 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.9 6.3E-22 1.6E-26 159.5 9.4 78 607-684 1-78 (78)
89 TIGR00487 IF-2 translation ini 99.8 1E-19 2.7E-24 145.3 15.1 250 9-392 89-340 (594)
90 cd03711 Tet_C Tet_C: C-terminu 99.8 2.1E-20 5.3E-25 149.8 9.7 77 607-683 1-77 (78)
91 cd01514 Elongation_Factor_C El 99.8 2.5E-20 6.3E-25 149.3 10.1 78 607-684 1-79 (79)
92 cd04092 mtEFG2_II_like mtEFG2_ 99.8 2.7E-21 6.8E-26 155.5 3.8 83 314-396 1-83 (83)
93 cd04091 mtEFG1_II_like mtEFG1_ 99.8 6.3E-21 1.6E-25 153.1 3.8 81 314-396 1-81 (81)
94 cd03710 BipA_TypA_C BipA_TypA_ 99.8 5.3E-19 1.3E-23 140.7 9.6 77 607-683 1-78 (79)
95 cd04088 EFG_mtEFG_II EFG_mtEFG 99.8 6.7E-20 1.7E-24 146.5 4.0 83 314-396 1-83 (83)
96 cd03689 RF3_II RF3_II: this su 99.8 1.3E-19 3.2E-24 144.7 4.4 82 316-397 1-85 (85)
97 cd03709 lepA_C lepA_C: This fa 99.8 1.1E-18 2.9E-23 138.6 8.8 76 607-682 1-78 (80)
98 cd01895 EngA2 EngA2 subfamily. 99.8 3.8E-17 9.8E-22 128.8 15.0 112 12-145 4-126 (174)
99 cd03690 Tet_II Tet_II: This su 99.8 3E-19 7.6E-24 142.3 4.0 85 311-396 1-85 (85)
100 cd03691 BipA_TypA_II BipA_TypA 99.7 7.9E-19 2E-23 139.6 4.5 83 314-396 1-86 (86)
101 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 9.5E-18 2.4E-22 132.7 3.6 83 314-396 1-94 (94)
102 cd04163 Era Era subfamily. Er 99.7 1.3E-15 3.3E-20 119.0 14.4 112 12-145 5-124 (168)
103 PRK00089 era GTP-binding prote 99.7 7E-15 1.8E-19 114.3 15.4 115 9-145 7-129 (296)
104 cd03700 eEF2_snRNP_like_II EF2 99.7 4.2E-17 1.1E-21 128.5 3.9 82 314-395 1-92 (93)
105 cd00880 Era_like Era (E. coli 99.7 2.4E-15 6.2E-20 117.2 12.8 111 15-146 1-118 (163)
106 cd01876 YihA_EngB The YihA (En 99.6 5.1E-15 1.3E-19 115.1 13.2 109 13-145 2-123 (170)
107 PRK00093 engA GTP-binding prot 99.6 1.1E-14 2.7E-19 113.1 14.4 112 12-145 3-123 (438)
108 PRK09518 bifunctional cytidyla 99.6 1.8E-14 4.6E-19 111.7 14.4 119 5-145 274-400 (714)
109 cd01894 EngA1 EngA1 subfamily. 99.6 2.8E-14 7.2E-19 110.4 15.0 110 14-145 1-118 (157)
110 PRK03003 engA GTP-binding prot 99.6 3.8E-14 9.8E-19 109.5 13.9 118 5-144 33-158 (474)
111 TIGR03594 GTPase_EngA ribosome 99.6 4.2E-14 1.1E-18 109.3 13.8 111 13-145 2-120 (429)
112 PRK00454 engB GTPase EngB; Rev 99.6 4.1E-14 1E-18 109.4 12.8 119 3-145 17-148 (196)
113 KOG0466 consensus 99.6 4.9E-14 1.2E-18 108.9 11.3 254 9-383 37-337 (466)
114 TIGR03594 GTPase_EngA ribosome 99.5 6.6E-13 1.7E-17 101.6 15.2 115 9-145 171-296 (429)
115 TIGR00231 small_GTP small GTP- 99.5 7.2E-14 1.8E-18 107.8 7.1 130 9-147 2-141 (186)
116 PRK00093 engA GTP-binding prot 99.5 3.5E-12 9E-17 96.9 15.7 116 9-146 171-297 (438)
117 PRK03003 engA GTP-binding prot 99.5 3.2E-12 8.2E-17 97.2 15.4 116 9-146 210-336 (474)
118 pfam10662 PduV-EutP Ethanolami 99.5 2.7E-13 6.9E-18 104.1 9.6 95 13-145 4-102 (143)
119 COG1160 Predicted GTPases [Gen 99.5 9E-12 2.3E-16 94.3 17.3 113 11-145 4-125 (444)
120 TIGR03598 GTPase_YsxC ribosome 99.5 7.4E-13 1.9E-17 101.3 11.4 120 3-146 11-143 (179)
121 pfam02421 FeoB_N Ferrous iron 99.5 3.3E-12 8.5E-17 97.1 14.7 109 12-145 1-117 (188)
122 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.9E-12 4.8E-17 98.7 13.3 110 12-145 3-120 (157)
123 KOG0052 consensus 99.4 2.3E-14 6E-19 110.9 1.1 128 10-145 7-155 (391)
124 PRK09518 bifunctional cytidyla 99.4 1.3E-11 3.4E-16 93.2 14.5 20 12-31 6-25 (714)
125 cd01898 Obg Obg subfamily. Th 99.4 7.4E-12 1.9E-16 94.8 13.1 112 12-145 2-127 (170)
126 PRK04213 GTP-binding protein; 99.4 1.7E-11 4.3E-16 92.5 14.7 107 12-145 3-135 (195)
127 cd01897 NOG NOG1 is a nucleola 99.4 5E-11 1.3E-15 89.5 15.6 111 12-145 2-126 (168)
128 pfam00025 Arf ADP-ribosylation 99.4 2.4E-11 6.2E-16 91.6 13.8 113 8-146 12-129 (174)
129 cd04155 Arl3 Arl3 subfamily. 99.4 1.4E-11 3.7E-16 93.0 12.5 116 6-147 10-130 (173)
130 COG1159 Era GTPase [General fu 99.4 1.8E-11 4.6E-16 92.4 12.9 114 11-146 7-128 (298)
131 cd04154 Arl2 Arl2 subfamily. 99.4 3.6E-11 9.1E-16 90.5 14.1 111 10-146 14-129 (173)
132 cd01878 HflX HflX subfamily. 99.3 7.1E-11 1.8E-15 88.6 13.9 114 10-145 41-166 (204)
133 cd00878 Arf_Arl Arf (ADP-ribos 99.3 3.3E-11 8.3E-16 90.7 11.7 108 13-146 2-114 (158)
134 COG2229 Predicted GTPase [Gene 99.3 8.5E-11 2.2E-15 88.1 12.2 132 11-155 11-144 (187)
135 cd01881 Obg_like The Obg-like 99.3 1.4E-10 3.5E-15 86.7 12.3 109 15-145 1-133 (176)
136 KOG1143 consensus 99.2 2.7E-10 7E-15 84.8 11.2 368 12-532 169-571 (591)
137 cd03699 lepA_II lepA_II: This 99.2 4.8E-12 1.2E-16 96.1 2.2 81 314-395 1-85 (86)
138 cd04157 Arl6 Arl6 subfamily. 99.2 8.3E-10 2.1E-14 81.7 13.5 111 12-146 1-118 (162)
139 pfam01926 MMR_HSR1 GTPase of u 99.2 4.1E-10 1E-14 83.7 10.9 98 22-141 1-106 (106)
140 cd04159 Arl10_like Arl10-like 99.2 4E-10 1E-14 83.7 10.8 108 13-145 2-114 (159)
141 COG1160 Predicted GTPases [Gen 99.2 5.3E-10 1.4E-14 82.9 11.0 116 9-146 177-303 (444)
142 cd04151 Arl1 Arl1 subfamily. 99.2 1.1E-09 2.8E-14 80.9 12.5 108 13-146 2-114 (158)
143 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 1.5E-09 3.7E-14 80.1 13.0 112 9-146 14-130 (174)
144 KOG0463 consensus 99.1 3.4E-10 8.8E-15 84.2 8.8 288 12-399 135-457 (641)
145 cd01879 FeoB Ferrous iron tran 99.1 2.3E-09 5.9E-14 78.8 12.3 106 15-145 1-114 (158)
146 cd04150 Arf1_5_like Arf1-Arf5- 99.1 3.4E-09 8.8E-14 77.7 12.8 110 12-147 2-116 (159)
147 cd00882 Ras_like_GTPase Ras-li 99.1 1.2E-09 3E-14 80.7 10.3 110 15-146 1-116 (157)
148 PRK09554 feoB ferrous iron tra 99.1 1.2E-08 3E-13 74.3 15.3 134 11-169 4-150 (772)
149 PTZ00133 ADP-ribosylation fact 99.1 4.8E-09 1.2E-13 76.8 12.8 112 9-146 16-132 (182)
150 cd04149 Arf6 Arf6 subfamily. 99.1 2.9E-09 7.5E-14 78.2 11.7 112 9-146 8-124 (168)
151 smart00177 ARF ARF-like small 99.1 5.2E-09 1.3E-13 76.6 12.6 111 10-146 13-128 (175)
152 cd04160 Arfrp1 Arfrp1 subfamil 99.1 2.3E-09 6E-14 78.8 10.3 115 13-146 2-121 (167)
153 cd04105 SR_beta Signal recogni 99.0 6.8E-09 1.7E-13 75.8 12.1 118 12-151 2-128 (203)
154 cd01896 DRG The developmentall 99.0 1.4E-08 3.5E-13 73.9 12.8 110 12-145 2-123 (233)
155 COG0370 FeoB Fe2+ transport sy 99.0 5.1E-08 1.3E-12 70.2 15.6 135 12-174 5-151 (653)
156 TIGR00450 thdF tRNA modificati 99.0 1.3E-08 3.3E-13 74.1 12.3 117 7-147 219-348 (473)
157 cd04156 ARLTS1 ARLTS1 subfamil 99.0 1.2E-08 3.1E-13 74.2 12.1 109 13-146 2-115 (160)
158 pfam00071 Ras Ras family. Incl 99.0 5.1E-09 1.3E-13 76.6 9.8 111 13-144 2-116 (162)
159 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 7.5E-09 1.9E-13 75.6 10.4 114 12-146 5-123 (183)
160 pfam09439 SRPRB Signal recogni 98.9 1.6E-08 4E-13 73.5 10.9 119 11-153 4-133 (181)
161 KOG1423 consensus 98.9 1.3E-07 3.2E-12 67.7 14.5 117 8-146 70-199 (379)
162 cd01860 Rab5_related Rab5-rela 98.9 6.9E-08 1.8E-12 69.4 13.0 110 12-144 3-118 (163)
163 cd04158 ARD1 ARD1 subfamily. 98.9 6.6E-08 1.7E-12 69.5 12.4 109 13-147 2-115 (169)
164 cd00879 Sar1 Sar1 subfamily. 98.9 4E-08 1E-12 70.9 10.7 125 8-161 17-146 (190)
165 cd00876 Ras Ras family. The R 98.9 7.9E-08 2E-12 69.0 12.1 109 13-144 2-116 (160)
166 cd01863 Rab18 Rab18 subfamily. 98.8 3.9E-08 9.8E-13 71.0 9.7 111 13-144 3-118 (161)
167 pfam03144 GTP_EFTU_D2 Elongati 98.8 1.7E-09 4.3E-14 79.7 1.8 68 328-395 1-70 (70)
168 smart00174 RHO Rho (Ras homolo 98.8 2.5E-07 6.4E-12 65.8 12.8 109 13-144 1-114 (174)
169 COG0218 Predicted GTPase [Gene 98.8 2.2E-07 5.5E-12 66.2 12.3 133 3-162 17-166 (200)
170 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 1.5E-07 3.9E-12 67.1 11.1 123 13-163 2-127 (164)
171 TIGR00437 feoB ferrous iron tr 98.8 9.4E-08 2.4E-12 68.5 9.8 129 17-173 1-142 (733)
172 cd04124 RabL2 RabL2 subfamily. 98.7 2.7E-07 6.9E-12 65.6 11.9 111 13-144 3-116 (161)
173 cd04139 RalA_RalB RalA/RalB su 98.7 1.1E-07 2.8E-12 68.0 9.9 110 12-144 2-117 (164)
174 cd04123 Rab21 Rab21 subfamily. 98.7 9.3E-08 2.4E-12 68.5 9.3 112 12-144 2-117 (162)
175 cd04101 RabL4 RabL4 (Rab-like4 98.7 3.1E-07 8E-12 65.1 11.9 114 13-144 3-119 (164)
176 cd00154 Rab Rab family. Rab G 98.7 2E-07 5.2E-12 66.4 10.8 112 12-144 2-117 (159)
177 cd01862 Rab7 Rab7 subfamily. 98.7 3.3E-07 8.3E-12 65.0 11.7 109 13-144 3-121 (172)
178 cd04116 Rab9 Rab9 subfamily. 98.7 1.2E-07 3.1E-12 67.8 9.2 115 9-144 4-126 (170)
179 cd04147 Ras_dva Ras-dva subfam 98.7 2.7E-07 6.9E-12 65.6 11.0 111 13-145 2-117 (198)
180 smart00175 RAB Rab subfamily o 98.7 1.4E-07 3.7E-12 67.3 9.6 112 12-144 2-117 (164)
181 cd00157 Rho Rho (Ras homology) 98.7 2.2E-07 5.7E-12 66.1 10.6 111 12-145 2-117 (171)
182 COG1084 Predicted GTPase [Gene 98.7 2.1E-07 5.3E-12 66.3 10.2 121 3-148 160-296 (346)
183 cd04137 RheB Rheb (Ras Homolog 98.7 2.3E-07 5.9E-12 66.0 9.8 112 11-144 2-118 (180)
184 smart00173 RAS Ras subfamily o 98.7 5.1E-07 1.3E-11 63.8 11.4 109 13-144 3-117 (164)
185 cd04119 RJL RJL (RabJ-Like) su 98.7 6.9E-07 1.8E-11 63.0 12.0 111 13-144 3-122 (168)
186 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 2.6E-07 6.7E-12 65.7 9.9 112 12-144 4-119 (166)
187 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 4.2E-07 1.1E-11 64.4 10.9 111 13-145 3-123 (201)
188 cd04176 Rap2 Rap2 subgroup. T 98.7 4.9E-07 1.3E-11 63.9 11.2 110 12-144 3-118 (163)
189 cd04145 M_R_Ras_like M-Ras/R-R 98.7 1.2E-07 3.1E-12 67.8 8.1 110 12-144 4-119 (164)
190 cd04132 Rho4_like Rho4-like su 98.7 6E-07 1.5E-11 63.3 11.6 113 12-145 2-118 (187)
191 cd01893 Miro1 Miro1 subfamily. 98.7 5.7E-07 1.5E-11 63.5 11.5 109 13-144 3-115 (166)
192 cd04138 H_N_K_Ras_like H-Ras/N 98.7 1.5E-07 3.8E-12 67.2 8.5 110 12-144 3-118 (162)
193 cd01867 Rab8_Rab10_Rab13_like 98.7 3.7E-07 9.5E-12 64.7 10.3 112 12-144 5-120 (167)
194 cd01868 Rab11_like Rab11-like. 98.7 4.2E-07 1.1E-11 64.4 10.6 110 12-144 5-120 (165)
195 pfam08477 Miro Miro-like prote 98.6 5.5E-07 1.4E-11 63.6 11.0 111 13-143 2-118 (118)
196 cd04112 Rab26 Rab26 subfamily. 98.6 4.2E-07 1.1E-11 64.3 10.0 113 12-144 2-118 (191)
197 cd04175 Rap1 Rap1 subgroup. T 98.6 8E-07 2E-11 62.6 11.2 110 12-144 3-118 (164)
198 cd04120 Rab12 Rab12 subfamily. 98.6 5.6E-07 1.4E-11 63.5 10.2 111 13-144 3-117 (202)
199 cd04144 Ras2 Ras2 subfamily. 98.6 9.3E-07 2.4E-11 62.1 11.3 109 13-144 2-118 (190)
200 cd04136 Rap_like Rap-like subf 98.6 7.1E-07 1.8E-11 62.9 10.7 109 13-144 4-118 (163)
201 cd01866 Rab2 Rab2 subfamily. 98.6 5.7E-07 1.5E-11 63.5 10.1 110 12-144 6-121 (168)
202 cd04121 Rab40 Rab40 subfamily. 98.6 1E-06 2.6E-11 61.9 11.3 115 9-144 5-122 (189)
203 cd01861 Rab6 Rab6 subfamily. 98.6 8.5E-07 2.2E-11 62.4 10.9 111 13-144 3-117 (161)
204 cd04177 RSR1 RSR1 subgroup. R 98.6 1.6E-07 4E-12 67.1 7.2 111 12-144 3-118 (168)
205 PTZ00132 GTP-binding nuclear p 98.6 6E-07 1.5E-11 63.3 10.1 110 12-144 8-122 (209)
206 cd04127 Rab27A Rab27a subfamil 98.6 6.3E-07 1.6E-11 63.2 10.2 116 11-144 5-132 (180)
207 cd01342 Translation_Factor_II_ 98.6 1.9E-08 4.8E-13 73.0 2.4 79 314-396 1-83 (83)
208 cd00877 Ran Ran (Ras-related n 98.6 1.1E-06 2.9E-11 61.5 11.5 109 13-144 3-116 (166)
209 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 3.6E-07 9.2E-12 64.8 8.7 112 13-145 3-119 (170)
210 cd01882 BMS1 Bms1. Bms1 is an 98.6 7.8E-07 2E-11 62.6 10.4 105 11-145 40-146 (225)
211 cd04113 Rab4 Rab4 subfamily. 98.6 6.3E-07 1.6E-11 63.2 9.9 111 13-144 3-117 (161)
212 cd04125 RabA_like RabA-like su 98.6 5.9E-07 1.5E-11 63.4 9.8 112 13-145 3-118 (188)
213 cd01864 Rab19 Rab19 subfamily. 98.6 5.3E-07 1.3E-11 63.7 9.0 110 12-144 5-120 (165)
214 cd04117 Rab15 Rab15 subfamily. 98.6 8.2E-07 2.1E-11 62.5 9.8 109 13-144 3-117 (161)
215 COG1100 GTPase SAR1 and relate 98.6 4.8E-07 1.2E-11 63.9 8.7 117 10-148 5-127 (219)
216 cd01870 RhoA_like RhoA-like su 98.6 8E-07 2E-11 62.5 9.8 111 11-144 2-117 (175)
217 cd04115 Rab33B_Rab33A Rab33B/R 98.6 2E-06 5E-11 60.0 11.6 113 10-145 2-122 (170)
218 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 9.3E-07 2.4E-11 62.1 9.9 112 11-144 3-119 (172)
219 cd04106 Rab23_lke Rab23-like s 98.6 8.1E-07 2.1E-11 62.5 9.6 114 13-145 3-119 (162)
220 cd01871 Rac1_like Rac1-like su 98.5 3.5E-06 9E-11 58.4 12.8 111 13-145 4-118 (174)
221 cd01874 Cdc42 Cdc42 subfamily. 98.5 3.4E-06 8.7E-11 58.5 12.7 110 12-144 3-117 (175)
222 cd01892 Miro2 Miro2 subfamily. 98.5 2E-06 5E-11 60.1 11.4 117 9-145 3-121 (169)
223 cd04118 Rab24 Rab24 subfamily. 98.5 1.4E-06 3.5E-11 61.0 10.4 112 13-144 3-117 (193)
224 cd04110 Rab35 Rab35 subfamily. 98.5 1.4E-06 3.6E-11 61.0 10.4 116 8-144 4-122 (199)
225 cd04135 Tc10 TC10 subfamily. 98.5 3E-06 7.7E-11 58.8 11.9 111 12-144 2-116 (174)
226 cd04140 ARHI_like ARHI subfami 98.5 1.8E-06 4.7E-11 60.2 10.7 110 12-144 3-120 (165)
227 TIGR03156 GTP_HflX GTP-binding 98.5 8.8E-07 2.2E-11 62.3 9.1 114 10-146 189-315 (351)
228 cd04142 RRP22 RRP22 subfamily. 98.5 1.4E-06 3.4E-11 61.1 9.9 111 13-144 3-128 (198)
229 cd04146 RERG_RasL11_like RERG/ 98.5 2.4E-06 6.1E-11 59.5 10.8 111 13-145 2-119 (165)
230 cd04133 Rop_like Rop subfamily 98.5 4E-06 1E-10 58.0 12.0 109 13-144 4-117 (176)
231 cd04114 Rab30 Rab30 subfamily. 98.5 1.4E-06 3.5E-11 61.0 9.6 114 8-144 5-124 (169)
232 COG3596 Predicted GTPase [Gene 98.5 1.3E-05 3.3E-10 54.8 14.0 175 11-286 40-223 (296)
233 smart00178 SAR Sar1p-like memb 98.5 3.3E-06 8.4E-11 58.6 11.0 114 8-147 15-133 (184)
234 cd04111 Rab39 Rab39 subfamily. 98.5 1.3E-06 3.4E-11 61.1 8.9 113 12-144 4-121 (211)
235 cd04122 Rab14 Rab14 subfamily. 98.5 8.7E-07 2.2E-11 62.3 7.9 112 12-144 4-119 (166)
236 COG0486 ThdF Predicted GTPase 98.5 5.2E-06 1.3E-10 57.3 11.9 113 12-149 219-341 (454)
237 cd01865 Rab3 Rab3 subfamily. 98.5 2.1E-06 5.3E-11 59.9 9.7 112 12-144 3-118 (165)
238 cd04130 Wrch_1 Wrch-1 subfamil 98.5 3.5E-06 9E-11 58.4 10.8 110 13-145 3-117 (173)
239 cd04128 Spg1 Spg1p. Spg1p (se 98.4 4.5E-06 1.1E-10 57.7 10.7 112 13-145 3-117 (182)
240 cd04134 Rho3 Rho3 subfamily. 98.4 8.2E-06 2.1E-10 56.0 12.1 112 11-145 1-117 (189)
241 cd04161 Arl2l1_Arl13_like Arl2 98.4 2.5E-06 6.5E-11 59.3 9.3 109 13-147 2-115 (167)
242 PRK05291 trmE tRNA modificatio 98.4 1E-05 2.5E-10 55.5 11.8 109 12-146 218-336 (445)
243 PRK12299 obgE GTPase ObgE; Rev 98.4 1.6E-05 4.1E-10 54.2 12.8 116 9-146 157-285 (334)
244 KOG0467 consensus 98.4 3.1E-10 7.8E-15 84.5 -11.4 422 2-494 172-631 (887)
245 cd04102 RabL3 RabL3 (Rab-like3 98.4 5.8E-06 1.5E-10 57.0 10.0 118 13-146 3-143 (202)
246 cd04131 Rnd Rnd subfamily. Th 98.4 7.5E-06 1.9E-10 56.3 10.4 110 12-144 3-117 (178)
247 cd03693 EF1_alpha_II EF1_alpha 98.3 3E-07 7.7E-12 65.3 3.1 85 311-399 2-90 (91)
248 COG5192 BMS1 GTP-binding prote 98.3 6.3E-06 1.6E-10 56.8 9.8 118 12-160 71-189 (1077)
249 cd01875 RhoG RhoG subfamily. 98.3 6.6E-06 1.7E-10 56.7 9.5 112 12-145 5-120 (191)
250 smart00176 RAN Ran (Ras-relate 98.3 8.5E-06 2.2E-10 55.9 10.0 108 16-144 1-111 (200)
251 cd04109 Rab28 Rab28 subfamily. 98.3 1.7E-05 4.2E-10 54.1 11.3 112 13-144 3-121 (215)
252 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 7.6E-06 1.9E-10 56.3 9.6 113 9-144 3-121 (182)
253 cd04143 Rhes_like Rhes_like su 98.3 1.9E-05 5E-10 53.6 11.3 111 13-145 3-126 (247)
254 cd04126 Rab20 Rab20 subfamily. 98.3 1.1E-05 2.8E-10 55.2 9.8 107 13-145 3-113 (220)
255 pfam00350 Dynamin_N Dynamin fa 98.3 7.1E-06 1.8E-10 56.4 8.8 63 80-142 101-168 (168)
256 PRK12298 obgE GTPase ObgE; Rev 98.3 4.7E-05 1.2E-09 51.2 12.9 116 10-147 159-290 (380)
257 PRK13768 GTPase; Provisional 98.2 3.8E-05 9.6E-10 51.8 11.7 67 82-148 99-178 (253)
258 cd04129 Rho2 Rho2 subfamily. 98.2 1.7E-05 4.4E-10 54.0 9.7 111 11-144 2-117 (187)
259 cd04148 RGK RGK subfamily. Th 98.2 1.7E-05 4.3E-10 54.1 9.5 110 12-144 2-118 (221)
260 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.2 3.1E-05 8E-10 52.3 10.8 109 13-144 4-117 (222)
261 COG1163 DRG Predicted GTPase [ 98.2 1.2E-05 3.2E-10 54.9 8.6 113 10-146 63-187 (365)
262 PRK11058 putative GTPase HflX; 98.2 2.6E-05 6.6E-10 52.8 10.2 55 605-661 361-416 (426)
263 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.2 5.8E-05 1.5E-09 50.6 11.8 116 6-144 8-129 (232)
264 PRK12297 obgE GTPase ObgE; Rev 98.2 0.00011 2.7E-09 48.9 12.7 116 9-146 157-288 (429)
265 cd04104 p47_IIGP_like p47 (47- 98.1 5.9E-05 1.5E-09 50.6 10.8 115 12-147 3-122 (197)
266 KOG1532 consensus 98.1 1.6E-05 4E-10 54.3 7.8 142 7-149 16-198 (366)
267 TIGR02528 EutP ethanolamine ut 98.1 3.9E-06 1E-10 58.1 4.4 100 12-148 2-106 (144)
268 PRK12296 obgE GTPase ObgE; Rev 98.1 0.00024 6.2E-09 46.6 12.8 110 9-145 158-297 (495)
269 cd03698 eRF3_II_like eRF3_II_l 98.0 4E-06 1E-10 58.0 3.7 79 313-396 1-83 (83)
270 KOG1489 consensus 98.0 0.00011 2.8E-09 48.8 10.3 110 9-145 195-325 (366)
271 COG2262 HflX GTPases [General 98.0 0.00033 8.3E-09 45.8 12.5 32 96-128 60-91 (411)
272 pfam04670 Gtr1_RagA Gtr1/RagA 98.0 0.00022 5.5E-09 46.9 11.2 127 13-160 2-140 (230)
273 KOG0090 consensus 98.0 5.1E-05 1.3E-09 50.9 7.9 118 11-154 39-167 (238)
274 pfam00735 Septin Septin. Membe 97.9 0.00038 9.8E-09 45.3 11.9 79 12-102 6-84 (280)
275 cd01850 CDC_Septin CDC/Septin. 97.9 0.00052 1.3E-08 44.5 12.4 123 12-146 6-157 (276)
276 pfam03029 ATP_bind_1 Conserved 97.9 1.3E-05 3.3E-10 54.8 4.1 65 82-146 92-168 (234)
277 cd04103 Centaurin_gamma Centau 97.9 0.0001 2.6E-09 49.0 8.3 104 13-144 3-111 (158)
278 cd04089 eRF3_II eRF3_II: domai 97.9 1.3E-05 3.2E-10 54.8 3.4 78 313-396 1-82 (82)
279 cd02036 MinD Bacterial cell di 97.8 0.00026 6.5E-09 46.4 9.9 81 82-164 65-146 (179)
280 PHA02518 ParA-like protein; Pr 97.8 0.00016 4.2E-09 47.7 8.7 147 13-163 3-163 (211)
281 KOG1191 consensus 97.8 0.00069 1.8E-08 43.7 11.3 10 275-284 247-256 (531)
282 KOG0395 consensus 97.8 5.2E-05 1.3E-09 50.9 5.2 115 10-146 3-122 (196)
283 KOG0078 consensus 97.7 0.002 5.1E-08 40.7 12.6 121 1-146 4-131 (207)
284 COG5019 CDC3 Septin family pro 97.7 8.3E-05 2.1E-09 49.6 5.4 124 12-147 25-177 (373)
285 pfam03308 ArgK ArgK protein. T 97.7 0.00061 1.5E-08 44.1 9.8 143 9-160 28-193 (267)
286 PRK09435 arginine/ornithine tr 97.7 0.0011 2.8E-08 42.4 10.8 145 9-160 48-216 (325)
287 cd03696 selB_II selB_II: this 97.6 4.6E-05 1.2E-09 51.3 3.6 77 316-396 3-83 (83)
288 cd03697 EFTU_II EFTU_II: Elong 97.6 4.5E-05 1.1E-09 51.3 3.4 78 316-397 3-86 (87)
289 KOG2486 consensus 97.6 0.00081 2.1E-08 43.3 9.8 120 3-145 129-261 (320)
290 cd01859 MJ1464 MJ1464. This f 97.6 0.00052 1.3E-08 44.5 8.1 53 93-145 2-54 (156)
291 cd01856 YlqF YlqF. Proteins o 97.5 0.00043 1.1E-08 45.0 7.3 56 88-145 3-59 (171)
292 PRK11568 hypothetical protein; 97.5 0.0073 1.9E-07 37.1 13.7 114 559-674 87-200 (204)
293 COG0378 HypB Ni2+-binding GTPa 97.5 0.00043 1.1E-08 45.0 7.2 127 10-145 13-155 (202)
294 KOG1547 consensus 97.4 0.00026 6.7E-09 46.4 5.1 73 12-96 48-120 (336)
295 COG1703 ArgK Putative periplas 97.4 0.003 7.7E-08 39.6 10.0 131 11-148 52-205 (323)
296 pfam07015 VirC1 VirC1 protein. 97.4 0.00014 3.6E-09 48.1 3.1 122 19-144 11-152 (231)
297 cd01873 RhoBTB RhoBTB subfamil 97.4 0.0032 8.2E-08 39.4 10.1 121 12-144 4-132 (195)
298 KOG0084 consensus 97.4 0.0065 1.7E-07 37.4 11.6 118 8-146 7-128 (205)
299 COG0536 Obg Predicted GTPase [ 97.4 0.0049 1.3E-07 38.2 10.9 110 9-146 158-289 (369)
300 PRK13849 putative crown gall t 97.4 0.00058 1.5E-08 44.2 6.1 122 19-144 11-152 (231)
301 KOG0073 consensus 97.4 0.0042 1.1E-07 38.6 10.5 110 12-147 18-132 (185)
302 KOG1707 consensus 97.3 0.0023 5.9E-08 40.3 8.7 123 1-147 1-130 (625)
303 KOG1954 consensus 97.3 0.0034 8.7E-08 39.2 9.5 128 9-147 57-226 (532)
304 KOG0098 consensus 97.3 0.004 1E-07 38.8 9.8 117 1-146 1-125 (216)
305 PTZ00099 rab6; Provisional 97.3 0.0016 4.1E-08 41.4 7.8 69 76-144 25-97 (176)
306 pfam01656 CbiA CobQ/CobB/MinD/ 97.3 0.0014 3.6E-08 41.7 7.3 83 79-163 112-196 (212)
307 PRK10463 hydrogenase nickel in 97.2 0.0019 4.9E-08 40.8 7.7 52 9-61 103-155 (290)
308 cd03110 Fer4_NifH_child This p 97.2 0.002 5.1E-08 40.7 7.2 81 79-162 92-172 (179)
309 pfam00448 SRP54 SRP54-type pro 97.2 0.0099 2.5E-07 36.3 10.6 127 11-144 2-152 (196)
310 KOG2655 consensus 97.1 0.00076 1.9E-08 43.4 4.8 75 12-98 23-97 (366)
311 cd03114 ArgK-like The function 97.1 0.0023 5.8E-08 40.4 6.7 124 13-143 2-148 (148)
312 cd01849 YlqF_related_GTPase Yl 97.1 0.0016 4E-08 41.4 5.8 41 105-145 1-42 (155)
313 TIGR03348 VI_IcmF type VI secr 97.0 0.0063 1.6E-07 37.5 8.3 106 13-146 114-257 (1169)
314 cd03115 SRP The signal recogni 97.0 0.0091 2.3E-07 36.5 9.1 123 13-145 3-152 (173)
315 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0028 7.1E-08 39.8 6.3 52 94-145 2-55 (141)
316 TIGR03371 cellulose_yhjQ cellu 97.0 0.0063 1.6E-07 37.5 8.1 90 79-170 114-206 (246)
317 cd02042 ParA ParA and ParB of 97.0 0.0023 6E-08 40.3 5.9 64 19-114 9-72 (104)
318 KOG0080 consensus 97.0 0.0023 5.8E-08 40.4 5.8 114 10-146 11-131 (209)
319 cd03289 ABCC_CFTR2 The CFTR su 96.9 0.015 3.7E-07 35.2 9.5 52 10-64 30-82 (275)
320 KOG0448 consensus 96.9 0.018 4.6E-07 34.6 10.0 135 12-149 111-278 (749)
321 pfam09140 MipZ ATPase MipZ. Mi 96.8 0.0092 2.3E-07 36.5 8.1 80 79-160 98-200 (261)
322 pfam04548 AIG1 AIG1 family. Ar 96.8 0.034 8.6E-07 32.8 10.8 60 12-92 2-61 (200)
323 pfam03193 DUF258 Protein of un 96.7 0.0026 6.6E-08 40.0 4.8 62 11-94 36-101 (161)
324 cd01859 MJ1464 MJ1464. This f 96.7 0.0036 9.3E-08 39.1 5.5 27 260-286 71-97 (156)
325 PRK12288 ribosome-associated G 96.7 0.0031 7.9E-08 39.5 4.9 54 92-147 111-167 (344)
326 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0021 5.5E-08 40.5 4.0 62 102-163 77-140 (287)
327 KOG1490 consensus 96.7 0.0063 1.6E-07 37.5 6.3 127 9-159 167-313 (620)
328 PRK11537 putative GTP-binding 96.7 0.019 4.9E-07 34.4 8.7 128 13-147 7-165 (317)
329 cd01858 NGP_1 NGP-1. Autoanti 96.6 0.0055 1.4E-07 37.9 5.7 50 96-145 1-52 (157)
330 PRK11174 cysteine/glutathione 96.6 0.03 7.6E-07 33.2 9.4 28 591-618 493-522 (588)
331 TIGR02729 Obg_CgtA GTP-binding 96.6 0.025 6.3E-07 33.7 8.8 110 10-145 158-295 (296)
332 cd03695 CysN_NodQ_II CysN_NodQ 96.6 0.0017 4.4E-08 41.2 2.8 65 328-396 15-81 (81)
333 KOG0394 consensus 96.6 0.024 6E-07 33.8 8.6 117 10-147 9-133 (210)
334 PRK01889 ribosome-associated G 96.5 0.0021 5.4E-08 40.6 3.2 53 103-156 111-164 (353)
335 KOG0079 consensus 96.5 0.026 6.5E-07 33.6 8.7 122 1-147 1-127 (198)
336 PRK05703 flhF flagellar biosyn 96.5 0.045 1.2E-06 32.0 9.9 21 148-168 10-30 (412)
337 PRK13657 cyclic beta-1,2-gluca 96.5 0.015 3.9E-07 35.1 7.5 28 591-618 479-508 (585)
338 TIGR03596 GTPase_YlqF ribosome 96.5 0.008 2E-07 36.8 5.8 56 88-145 5-61 (276)
339 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.0077 2E-07 37.0 5.6 15 266-280 76-90 (157)
340 COG4917 EutP Ethanolamine util 96.4 0.016 4.2E-07 34.9 7.2 97 12-145 3-103 (148)
341 cd01853 Toc34_like Toc34-like 96.4 0.034 8.6E-07 32.8 8.8 115 8-162 29-146 (249)
342 KOG0077 consensus 96.4 0.015 3.9E-07 35.0 7.0 107 12-148 22-137 (193)
343 PRK10416 cell division protein 96.4 0.066 1.7E-06 31.0 10.1 20 453-472 381-401 (499)
344 smart00053 DYNc Dynamin, GTPas 96.4 0.074 1.9E-06 30.6 10.9 132 11-146 27-206 (240)
345 KOG0092 consensus 96.4 0.022 5.7E-07 34.0 7.6 113 12-145 7-123 (200)
346 PRK09563 rbgA ribosomal biogen 96.4 0.01 2.6E-07 36.2 5.7 56 88-145 8-64 (282)
347 pfam05049 IIGP Interferon-indu 96.3 0.081 2.1E-06 30.4 11.6 133 7-160 31-179 (375)
348 cd03253 ABCC_ATM1_transporter 96.3 0.031 7.9E-07 33.1 8.0 51 12-67 29-83 (236)
349 PRK00098 ribosome-associated G 96.3 0.01 2.7E-07 36.1 5.4 43 103-145 80-124 (298)
350 TIGR00436 era GTP-binding prot 96.3 0.024 6E-07 33.8 7.3 112 12-145 2-123 (278)
351 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.081 2.1E-06 30.4 9.9 53 12-67 36-90 (207)
352 cd01857 HSR1_MMR1 HSR1/MMR1. 96.3 0.012 3.1E-07 35.7 5.7 24 8-31 81-104 (141)
353 cd03288 ABCC_SUR2 The SUR doma 96.2 0.08 2E-06 30.4 9.7 54 11-67 48-103 (257)
354 pfam09547 Spore_IV_A Stage IV 96.2 0.052 1.3E-06 31.6 8.7 153 12-168 19-216 (492)
355 PRK11160 cysteine/glutathione 96.2 0.037 9.4E-07 32.6 7.9 28 590-617 483-512 (575)
356 KOG0075 consensus 96.2 0.0094 2.4E-07 36.4 4.7 110 12-147 22-137 (186)
357 COG3523 IcmF Type VI protein s 96.1 0.0098 2.5E-07 36.3 4.7 106 13-146 128-270 (1188)
358 cd01856 YlqF YlqF. Proteins o 96.1 0.016 4E-07 35.0 5.7 27 260-286 76-102 (171)
359 cd03252 ABCC_Hemolysin The ABC 96.1 0.04 1E-06 32.4 7.7 53 12-67 30-84 (237)
360 TIGR03596 GTPase_YlqF ribosome 96.1 0.02 5.2E-07 34.2 6.1 27 260-286 78-104 (276)
361 cd01852 AIG1 AIG1 (avrRpt2-ind 96.0 0.12 3E-06 29.4 10.0 61 12-93 2-62 (196)
362 PRK06995 flhF flagellar biosyn 95.9 0.03 7.6E-07 33.2 6.5 24 146-169 8-31 (404)
363 cd03251 ABCC_MsbA MsbA is an e 95.9 0.11 2.8E-06 29.6 9.3 54 11-67 29-84 (234)
364 KOG0076 consensus 95.9 0.023 6E-07 33.9 5.8 112 11-146 18-140 (197)
365 pfam02492 cobW CobW/HypB/UreG, 95.9 0.13 3.2E-06 29.2 9.6 128 14-147 4-152 (174)
366 cd03694 GTPBP_II Domain II of 95.9 0.0063 1.6E-07 37.5 2.9 73 319-395 6-86 (87)
367 KOG0070 consensus 95.9 0.025 6.5E-07 33.6 6.0 113 9-147 16-133 (181)
368 KOG0086 consensus 95.9 0.11 2.7E-06 29.6 9.1 118 8-146 7-128 (214)
369 cd03244 ABCC_MRP_domain2 Domai 95.8 0.13 3.2E-06 29.1 9.3 51 11-64 31-83 (221)
370 KOG0088 consensus 95.8 0.017 4.4E-07 34.7 4.8 107 12-144 15-130 (218)
371 COG1162 Predicted GTPases [Gen 95.8 0.01 2.6E-07 36.2 3.6 48 104-151 80-129 (301)
372 COG0523 Putative GTPases (G3E 95.7 0.057 1.4E-06 31.4 7.2 142 12-162 3-175 (323)
373 cd03278 ABC_SMC_barmotin Barmo 95.7 0.065 1.7E-06 31.0 7.5 23 13-35 25-47 (197)
374 TIGR03597 GTPase_YqeH ribosome 95.7 0.011 2.8E-07 36.0 3.5 56 91-148 51-106 (360)
375 PRK10522 multidrug transporter 95.7 0.055 1.4E-06 31.5 7.0 26 591-616 457-484 (547)
376 TIGR00491 aIF-2 translation in 95.7 0.0094 2.4E-07 36.4 3.0 37 200-236 206-249 (1145)
377 PRK10789 putative multidrug tr 95.7 0.074 1.9E-06 30.7 7.5 28 591-618 459-488 (569)
378 PRK12723 flagellar biosynthesi 95.6 0.066 1.7E-06 31.0 7.1 34 147-180 10-43 (388)
379 cd01855 YqeH YqeH. YqeH is an 95.6 0.02 5E-07 34.3 4.4 26 260-285 100-125 (190)
380 cd01849 YlqF_related_GTPase Yl 95.6 0.028 7.3E-07 33.3 5.1 20 12-31 102-121 (155)
381 KOG3883 consensus 95.5 0.18 4.5E-06 28.2 10.2 118 9-145 8-131 (198)
382 PRK12727 flagellar biosynthesi 95.5 0.061 1.6E-06 31.2 6.7 16 424-439 413-428 (557)
383 PRK11176 lipid transporter ATP 95.5 0.067 1.7E-06 30.9 6.8 27 590-616 486-514 (581)
384 cd04178 Nucleostemin_like Nucl 95.4 0.044 1.1E-06 32.1 5.6 42 105-146 1-44 (172)
385 PRK13796 GTP-binding protein Y 95.4 0.044 1.1E-06 32.1 5.5 64 82-148 48-114 (367)
386 KOG0087 consensus 95.4 0.15 3.8E-06 28.7 8.2 118 7-145 11-132 (222)
387 TIGR00750 lao LAO/AO transport 95.4 0.2 5.2E-06 27.8 9.9 131 9-148 37-198 (333)
388 PRK10790 putative multidrug tr 95.3 0.14 3.7E-06 28.8 8.0 44 591-635 484-529 (593)
389 PRK09563 rbgA ribosomal biogen 95.3 0.077 2E-06 30.6 6.5 27 260-286 81-107 (282)
390 TIGR02836 spore_IV_A stage IV 95.3 0.14 3.4E-06 29.0 7.8 153 12-168 19-216 (492)
391 PRK12289 ribosome-associated G 95.3 0.018 4.6E-07 34.6 3.3 47 101-147 86-134 (351)
392 KOG0071 consensus 95.2 0.12 3.1E-06 29.3 7.4 123 13-164 20-147 (180)
393 COG1149 MinD superfamily P-loo 95.2 0.098 2.5E-06 29.9 6.8 58 82-142 166-224 (284)
394 COG0419 SbcC ATPase involved i 95.0 0.063 1.6E-06 31.1 5.4 67 12-89 27-96 (908)
395 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.16 4E-06 28.6 7.3 90 13-140 2-99 (99)
396 PRK09601 translation-associate 95.0 0.11 2.8E-06 29.5 6.5 90 12-116 4-109 (364)
397 TIGR03597 GTPase_YqeH ribosome 94.9 0.093 2.4E-06 30.0 6.1 22 262-283 130-151 (360)
398 TIGR02315 ABC_phnC phosphonate 94.9 0.011 2.8E-07 36.0 1.3 18 13-30 31-48 (253)
399 PRK12289 ribosome-associated G 94.9 0.1 2.6E-06 29.8 6.2 21 260-280 149-169 (351)
400 PRK00098 ribosome-associated G 94.9 0.14 3.5E-06 28.9 6.8 14 544-557 236-249 (298)
401 KOG2485 consensus 94.8 0.18 4.5E-06 28.2 7.3 77 80-158 22-100 (335)
402 cd01854 YjeQ_engC YjeQ/EngC. 94.7 0.14 3.5E-06 28.9 6.6 15 544-558 234-248 (287)
403 KOG4252 consensus 94.7 0.071 1.8E-06 30.8 5.0 119 6-145 16-137 (246)
404 cd03112 CobW_like The function 94.7 0.089 2.3E-06 30.1 5.5 21 14-34 4-24 (158)
405 PRK13760 putative RNA-associat 94.7 0.19 4.8E-06 28.0 7.2 65 610-675 164-229 (233)
406 KOG0096 consensus 94.6 0.23 5.8E-06 27.5 7.5 116 9-145 9-127 (216)
407 KOG1486 consensus 94.6 0.12 3.1E-06 29.3 6.1 97 12-132 64-167 (364)
408 cd03246 ABCC_Protease_Secretio 94.6 0.33 8.3E-06 26.5 8.3 115 11-140 29-153 (173)
409 TIGR01007 eps_fam capsular exo 94.5 0.25 6.4E-06 27.2 7.5 67 80-147 131-198 (207)
410 TIGR01978 sufC FeS assembly AT 94.5 0.055 1.4E-06 31.5 4.1 51 13-73 29-86 (248)
411 cd03247 ABCC_cytochrome_bd The 94.5 0.34 8.8E-06 26.4 8.4 51 11-64 29-80 (178)
412 cd00009 AAA The AAA+ (ATPases 94.5 0.35 9E-06 26.3 8.6 27 9-35 18-44 (151)
413 TIGR02782 TrbB_P P-type conjug 94.4 0.037 9.5E-07 32.6 3.0 16 167-182 79-95 (315)
414 cd02038 FleN-like FleN is a me 94.3 0.38 9.7E-06 26.1 10.5 116 17-159 7-126 (139)
415 PRK13900 type IV secretion sys 94.3 0.2 5.1E-06 27.9 6.6 52 245-304 148-199 (332)
416 PRK13796 GTP-binding protein Y 94.3 0.18 4.6E-06 28.1 6.3 23 261-283 137-159 (367)
417 TIGR02142 modC_ABC molybdate A 94.2 0.032 8.1E-07 33.0 2.4 23 13-38 26-48 (361)
418 COG0552 FtsY Signal recognitio 94.2 0.41 1E-05 25.9 8.5 11 350-360 149-159 (340)
419 PRK03695 vitamin B12-transport 94.0 0.11 2.8E-06 29.6 4.8 48 11-61 24-72 (245)
420 TIGR01184 ntrCD nitrate ABC tr 94.0 0.04 1E-06 32.4 2.5 19 12-30 13-31 (230)
421 KOG0094 consensus 93.9 0.45 1.2E-05 25.6 11.5 115 9-144 21-140 (221)
422 COG1419 FlhF Flagellar GTP-bin 93.8 0.19 4.7E-06 28.1 5.6 34 146-179 8-41 (407)
423 COG1763 MobB Molybdopterin-gua 93.7 0.24 6.2E-06 27.3 6.2 22 11-32 3-24 (161)
424 cd03116 MobB Molybdenum is an 93.7 0.077 2E-06 30.5 3.5 23 11-33 2-24 (159)
425 PRK10751 molybdopterin-guanine 93.6 0.07 1.8E-06 30.8 3.2 22 12-33 4-25 (170)
426 cd01123 Rad51_DMC1_radA Rad51_ 93.6 0.23 6E-06 27.4 5.9 22 13-34 22-43 (235)
427 TIGR02857 CydD ABC transporter 93.6 0.11 2.7E-06 29.6 4.1 56 580-635 492-552 (570)
428 KOG0074 consensus 93.5 0.54 1.4E-05 25.1 7.7 117 6-147 13-134 (185)
429 cd03254 ABCC_Glucan_exporter_l 93.5 0.12 3E-06 29.4 4.2 56 9-67 28-85 (229)
430 PRK12288 ribosome-associated G 93.5 0.36 9.2E-06 26.2 6.7 18 331-348 66-83 (344)
431 COG1161 Predicted GTPases [Gen 93.5 0.22 5.6E-06 27.6 5.5 64 84-149 14-78 (322)
432 KOG0095 consensus 93.5 0.54 1.4E-05 25.1 11.0 127 10-160 7-138 (213)
433 KOG0072 consensus 93.4 0.17 4.3E-06 28.4 4.9 109 12-146 20-133 (182)
434 PRK00131 aroK shikimate kinase 93.4 0.14 3.5E-06 29.0 4.4 96 10-139 4-103 (175)
435 PRK06731 flhF flagellar biosyn 93.4 0.56 1.4E-05 25.0 9.6 128 9-145 74-224 (270)
436 PRK12724 flagellar biosynthesi 93.4 0.32 8.1E-06 26.6 6.2 24 146-169 8-31 (432)
437 TIGR03375 type_I_sec_LssB type 93.4 0.52 1.3E-05 25.2 7.3 37 591-631 609-647 (694)
438 COG1192 Soj ATPases involved i 93.2 0.19 4.9E-06 28.0 4.9 80 79-161 119-206 (259)
439 CHL00175 minD septum-site dete 93.2 0.22 5.7E-06 27.6 5.2 83 78-162 123-208 (279)
440 TIGR03258 PhnT 2-aminoethylpho 93.1 0.17 4.2E-06 28.4 4.4 47 11-62 32-82 (362)
441 PRK13548 hmuV hemin importer A 93.0 0.17 4.3E-06 28.4 4.4 48 11-61 29-78 (257)
442 COG1120 FepC ABC-type cobalami 93.0 0.28 7E-06 27.0 5.5 128 11-147 29-167 (258)
443 TIGR00073 hypB hydrogenase acc 93.0 0.09 2.3E-06 30.1 3.0 120 6-144 30-176 (225)
444 PRK13632 cbiO cobalt transport 93.0 0.2 5.2E-06 27.8 4.8 20 12-31 38-57 (273)
445 cd03230 ABC_DR_subfamily_A Thi 93.0 0.65 1.7E-05 24.6 8.3 25 11-38 27-51 (173)
446 COG1162 Predicted GTPases [Gen 92.9 0.4 1E-05 26.0 6.2 15 544-558 237-251 (301)
447 PRK10253 iron-enterobactin tra 92.9 0.15 3.7E-06 28.8 3.9 53 8-63 31-85 (265)
448 pfam00437 GSPII_E Type II/IV s 92.9 0.29 7.4E-06 26.9 5.4 14 272-285 151-164 (283)
449 PRK13635 cbiO cobalt transport 92.8 0.22 5.6E-06 27.6 4.7 48 11-61 34-83 (279)
450 COG0541 Ffh Signal recognition 92.8 0.68 1.7E-05 24.4 10.3 126 11-145 101-252 (451)
451 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.8 0.16 4.1E-06 28.5 4.0 53 11-66 30-84 (238)
452 PRK05057 aroK shikimate kinase 92.7 0.19 4.8E-06 28.0 4.3 108 10-157 4-115 (172)
453 COG1161 Predicted GTPases [Gen 92.7 0.14 3.5E-06 29.0 3.6 20 13-32 135-154 (322)
454 KOG0780 consensus 92.6 0.72 1.8E-05 24.3 9.2 124 12-145 103-253 (483)
455 COG1134 TagH ABC-type polysacc 92.5 0.12 3E-06 29.4 3.0 17 327-343 64-80 (249)
456 pfam06858 NOG1 Nucleolar GTP-b 92.5 0.31 8E-06 26.6 5.2 47 96-143 5-58 (58)
457 PRK11231 fecE iron-dicitrate t 92.5 0.16 4E-06 28.6 3.7 48 11-61 29-78 (255)
458 cd03295 ABC_OpuCA_Osmoprotecti 92.5 0.11 2.9E-06 29.5 2.9 51 11-64 28-80 (242)
459 cd01130 VirB11-like_ATPase Typ 92.5 0.16 4E-06 28.5 3.6 27 7-33 22-48 (186)
460 KOG1534 consensus 92.5 0.33 8.5E-06 26.5 5.3 132 13-147 6-179 (273)
461 cd03263 ABC_subfamily_A The AB 92.4 0.29 7.3E-06 26.9 4.9 21 11-31 29-49 (220)
462 PRK13636 cbiO cobalt transport 92.4 0.28 7.2E-06 26.9 4.9 30 11-43 33-63 (285)
463 COG1428 Deoxynucleoside kinase 92.3 0.15 3.8E-06 28.7 3.4 48 11-59 5-52 (216)
464 PRK13643 cbiO cobalt transport 92.3 0.2 5.1E-06 27.9 4.0 33 11-46 33-66 (288)
465 TIGR02868 CydC ABC transporter 92.3 0.13 3.4E-06 29.0 3.1 43 589-631 507-552 (566)
466 cd03259 ABC_Carb_Solutes_like 92.3 0.25 6.4E-06 27.2 4.5 21 11-31 27-47 (213)
467 PRK11650 ugpC glycerol-3-phosp 92.3 0.23 5.9E-06 27.5 4.3 21 11-31 31-51 (358)
468 cd03225 ABC_cobalt_CbiO_domain 92.3 0.21 5.4E-06 27.7 4.1 20 12-31 29-48 (211)
469 PRK11022 dppD dipeptide transp 92.3 0.16 4.1E-06 28.5 3.5 34 11-47 34-67 (327)
470 PRK13647 cbiO cobalt transport 92.2 0.32 8.1E-06 26.6 4.9 21 11-31 32-52 (273)
471 PRK13650 cbiO cobalt transport 92.2 0.17 4.4E-06 28.3 3.5 21 11-31 31-51 (276)
472 TIGR00176 mobB molybdopterin-g 92.2 0.11 2.9E-06 29.5 2.5 20 13-32 2-21 (165)
473 TIGR03265 PhnT2 putative 2-ami 92.1 0.24 6.2E-06 27.3 4.2 47 11-61 31-78 (353)
474 PRK10895 putative ABC transpor 92.1 0.2 5E-06 27.9 3.7 27 9-38 28-54 (241)
475 cd03219 ABC_Mj1267_LivG_branch 92.0 0.34 8.7E-06 26.4 4.9 48 12-62 28-78 (236)
476 TIGR03410 urea_trans_UrtE urea 92.0 0.34 8.6E-06 26.4 4.8 51 11-64 27-80 (230)
477 cd03231 ABC_CcmA_heme_exporter 91.9 0.32 8.1E-06 26.6 4.7 33 9-44 25-58 (201)
478 TIGR02673 FtsE cell division A 91.9 0.15 3.9E-06 28.6 3.0 19 15-34 33-51 (215)
479 pfam09186 DUF1949 Domain of un 91.9 0.37 9.5E-06 26.1 5.0 55 614-669 1-55 (55)
480 PRK13631 cbiO cobalt transport 91.9 0.14 3.6E-06 28.9 2.8 21 11-31 53-73 (320)
481 cd03291 ABCC_CFTR1 The CFTR su 91.9 0.14 3.5E-06 29.0 2.7 20 12-31 65-84 (282)
482 PRK13546 teichoic acids export 91.9 0.13 3.4E-06 29.0 2.6 20 12-31 52-71 (264)
483 COG1121 ZnuC ABC-type Mn/Zn tr 91.8 0.35 8.9E-06 26.3 4.8 140 11-165 31-193 (254)
484 pfam12128 DUF3584 Protein of u 91.8 0.27 6.8E-06 27.1 4.1 78 11-92 18-106 (1192)
485 pfam06564 YhjQ YhjQ protein. T 91.8 0.52 1.3E-05 25.2 5.6 60 78-144 116-175 (244)
486 COG0563 Adk Adenylate kinase a 91.8 0.23 5.9E-06 27.5 3.8 108 11-140 1-112 (178)
487 PRK13948 shikimate kinase; Pro 91.8 0.35 8.8E-06 26.4 4.7 106 1-140 1-110 (182)
488 PRK13833 conjugal transfer pro 91.7 0.7 1.8E-05 24.4 6.2 19 268-286 152-170 (323)
489 cd03216 ABC_Carb_Monos_I This 91.7 0.93 2.4E-05 23.6 9.5 51 9-62 25-78 (163)
490 PRK06547 hypothetical protein; 91.6 0.2 5E-06 27.9 3.3 25 9-33 14-38 (184)
491 cd03279 ABC_sbcCD SbcCD and ot 91.6 0.94 2.4E-05 23.6 7.1 32 12-43 30-62 (213)
492 PRK13947 shikimate kinase; Pro 91.6 0.29 7.5E-06 26.8 4.2 98 10-139 1-100 (171)
493 pfam06431 Polyoma_lg_T_C Polyo 91.6 0.22 5.7E-06 27.6 3.5 16 372-389 219-234 (417)
494 PRK08118 topology modulation p 91.6 0.22 5.5E-06 27.6 3.5 27 11-37 2-28 (167)
495 TIGR00618 sbcc exonuclease Sbc 91.5 0.18 4.5E-06 28.2 3.0 64 10-73 30-98 (1063)
496 cd03248 ABCC_TAP TAP, the Tran 91.5 0.26 6.6E-06 27.2 3.8 54 11-67 41-96 (226)
497 PRK09580 sufC cysteine desulfu 91.5 0.38 9.8E-06 26.1 4.7 46 10-58 27-76 (248)
498 cd03245 ABCC_bacteriocin_expor 91.4 0.25 6.4E-06 27.2 3.7 53 11-66 31-85 (220)
499 TIGR00957 MRP_assoc_pro multi 91.4 0.22 5.5E-06 27.6 3.3 94 376-481 1267-1366(1542)
500 PRK09473 oppD oligopeptide tra 91.3 0.58 1.5E-05 24.9 5.5 56 13-74 45-105 (330)
No 1
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=1478.96 Aligned_cols=692 Identities=62% Similarity=1.026 Sum_probs=674.6
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999607778713
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
|+++|++||||||||+||+|||||||+|+||+++|.++++|+|++|+++||++++||||||||+|+++++.|++ +|
T Consensus 1 ~~~~~~ie~IRNi~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~----~~ 76 (693)
T PRK00007 1 MARTTPLERYRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD----GH 76 (693)
T ss_pred CCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECC----CE
T ss_conf 99889667870999991699998999999999669846584243898556782889976988732225488269----73
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89998179875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
+|||||||||+||++||.+|||++||||+||||++|||+||+++||||.++++|+|+|||||||+++|++.++++++++|
T Consensus 77 ~iNlIDTPGHvDF~~Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ad~~~~l~~i~~~l 156 (693)
T PRK00007 77 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTGADFLRVVEQIKDRL 156 (693)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 89999197975248999999998586899998898877779999999987598969999797789999899999999985
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26833000234555665302442234431145222698513874004317889999998863002345789998632778
Q gi|254780264|r 161 GANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 (701)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~ 240 (701)
+.+++++|+|++.++.|.|++|+++++++.|.+...|.++...++|+...+....+|+.++|.+++.||++|++||+++.
T Consensus 157 ~~~~~~~~~pi~~~~~f~g~vdl~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~r~~l~e~vae~dd~lle~yl~~~~ 236 (693)
T PRK00007 157 GANPVPIQLPIGAEDDFKGVVDLVKMKAIIWDDDDLGTTFEYEEIPADLKDKAEEYREKLVEAAAEADEELMEKYLEGEE 236 (693)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 99768998400247764330330000133213334687137701858999999999999999998549999999855788
Q ss_pred CCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCC-CCCCCCCCCCCCCCEECC
Q ss_conf 9988987300000310100323431000122102488989871786213000122224567-521011234565420103
Q gi|254780264|r 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSN-SEIDVSAVDSSPLSMLAF 319 (701)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~v~ 319 (701)
++.++++..+++.++.++++||+||||++|.|+++|||+|++++|||.++++..+...... .....++++++|++++||
T Consensus 237 ~~~~el~~~lr~~~~~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~pl~a~vf 316 (693)
T PRK00007 237 LTEEEIKAALRKGTLANEIVPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF 316 (693)
T ss_pred CCHHHHHHHHHHHHHHCCEEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf 99999999999988727656610265434878999999999867992125650020689874035642698777146875
Q ss_pred CCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 32116546710000110133456836898326554111045321047445420035673264138744432110127788
Q gi|254780264|r 320 KVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSR 399 (701)
Q Consensus 320 K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~ 399 (701)
|+..||+.|+++|+|||||+|+.||+|+|...+++++|+++|.++|+++++|++++|||||+|.||+++.+|||||++..
T Consensus 317 K~~~dp~~G~ls~~RV~SGtl~~g~~v~n~~~~~~e~i~~l~~~~g~~~~~v~~~~AGdIvai~gL~~~~tgdTl~~~~~ 396 (693)
T PRK00007 317 KIMTDPFVGKLTFFRVYSGVLNSGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDPDN 396 (693)
T ss_pred EEEECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCEEECCCCCCCCC
T ss_conf 56774899826889822572368986314654321135633898558851600772796489853343052553147677
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 41015663665213577761564322025788885410274201445045754687606647899999998741113320
Q gi|254780264|r 400 PIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN 479 (701)
Q Consensus 400 ~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~ 479 (701)
+..++++.+|+|+++++|||++++|++||.+||++|.++||+|++++|+||||++|+|+||||||||++||+++|++|++
T Consensus 397 ~~~l~~~~~p~Pv~~~aieP~~~~d~~kL~~aL~~L~~eDPsl~v~~~eetge~vl~g~GElHLei~~~rL~~~f~vev~ 476 (693)
T PRK00007 397 PIILERMEFPEPVISVAVEPKTKADQEKMGIALGKLAEEDPSFRVSTDEESGQTIIAGMGELHLDIIVDRMKREFKVEAN 476 (693)
T ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 65345445898643168854976779999999998784497389999078871899857899999999999877098346
Q ss_pred ECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10541011014442103554321158987530278999702888864798120026700243332567789999971882
Q gi|254780264|r 480 VGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPL 559 (701)
Q Consensus 480 vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL 559 (701)
+|+|.|+|||||++++..+++|+||+||++||+++++.++|+++|.++.|++++++|++|++|+++|++||+|++++|||
T Consensus 477 ~~~P~V~yrETI~~~~~~~~~~~kqsgg~gq~~~v~i~~eP~~~g~g~~f~~~i~gg~ip~~~~~av~~G~~~a~~~GpL 556 (693)
T PRK00007 477 VGKPQVAYRETIRKSVEVEGKFKKQSGGRGQYGHVVIELEPLEPGKGYEFENKIVGGVVPKEYIPAVDKGIQEAMKSGVL 556 (693)
T ss_pred ECCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 04882368987426410257998852887726799999953888978557302456767788878899999999970982
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 25503312899995111687676033799999999999984898898017899998385774579999972770797453
Q gi|254780264|r 560 AGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE 639 (701)
Q Consensus 560 ~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~ 639 (701)
|||||+||+|+|+|+++|++||++++|++|++.|+++|+++|+|+||||||.++|+||++++|.||++|++|||+|.+++
T Consensus 557 ~g~pv~~vkv~l~dg~~h~vds~~~af~~A~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~ 636 (693)
T PRK00007 557 AGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEDYMGDVIGDLNSRRGQIQGME 636 (693)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEE
T ss_conf 57854315999980675578874689999999999999986698897683799999488998999999987698874626
Q ss_pred CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHHHH
Q ss_conf 589839999996043733847887863086379899962904088559999999973
Q gi|254780264|r 640 NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYS 696 (701)
Q Consensus 640 ~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~~~ 696 (701)
+.+++.+|+|++|++|||||+++||++|+|+|+|++.|+||++||++++++++++++
T Consensus 637 ~~~~~~~I~a~vP~~E~~gy~~~LRs~T~G~g~~~~~F~~y~~vP~~~~~~ii~~~k 693 (693)
T PRK00007 637 DRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 693 (693)
T ss_pred ECCCCEEEEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 339909999998878862857997853889358999948664399889999997519
No 2
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=1457.74 Aligned_cols=692 Identities=61% Similarity=1.035 Sum_probs=680.0
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999607778713
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
|+|+|++||||||||+||+|||||||+|+||+++|.|+++|++++|+++||++++||||||||+|+++|+.|+ +|
T Consensus 1 ~~~~~~~e~IRNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~-----~~ 75 (693)
T PRK12739 1 MAREFPLEKTRNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWK-----DH 75 (693)
T ss_pred CCCCCCHHHCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEEC-----CE
T ss_conf 9987857881399999079989899999999976985657334389756878099987598674552778459-----98
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89998179875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
+|||||||||+||++||.+|||++|||||||||+||||+||+++||||.++++|+|+|||||||+++|++.++++++++|
T Consensus 76 ~iNLIDTPGHvDF~~EV~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ad~~~~~~~i~~~l 155 (693)
T PRK12739 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRVVEQIKDRL 155 (693)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999496974058999999998487999997898876779999999998698969999797889999899999999985
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26833000234555665302442234431145222698513874004317889999998863002345789998632778
Q gi|254780264|r 161 GANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 (701)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~ 240 (701)
+.++.++++|++.++.|.|++|+++++++.|.+...+..|...++++...+....+++.++|.+++.||.+|++|+++..
T Consensus 156 ~~~~~~~~~pi~~~~~f~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~v~e~dd~l~e~~l~~~~ 235 (693)
T PRK12739 156 GANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAETDEELMEKYLEGEE 235 (693)
T ss_pred CCCEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89779997422036553311431005788850455798337810768899999999999999998652899999855877
Q ss_pred CCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99889873000003101003234310001221024889898717862130001222245675210112345654201033
Q gi|254780264|r 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFK 320 (701)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K 320 (701)
++.++++..+++....++++|++|||+++|.|+++|||+|++++|||.++++.+..+...+......+++++|++++|||
T Consensus 236 ~~~~~l~~~l~~~~~~~~~~Pv~~gs~~~~~gv~~Lld~I~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~K 315 (693)
T PRK12739 236 ITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDIPAIKGINPDTGEEVERPASDDEPFAALAFK 315 (693)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEE
T ss_conf 88999999999999837600203232003878999999999768991223443344788764235036999883899999
Q ss_pred CCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 21165467100001101334568368983265541110453210474454200356732641387444321101277884
Q gi|254780264|r 321 VMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRP 400 (701)
Q Consensus 321 ~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~ 400 (701)
+.+|++.|+++|+|||||+|++||+|+|...+++++|+++|.++|++++++++++|||||+|.||+++.+||||+++..+
T Consensus 316 ~~~d~~~G~ia~~RV~sGtl~~g~~v~n~~~~~~~ki~~l~~~~g~~~~~v~~~~aG~Iv~i~Gl~~~~tgdtl~~~~~~ 395 (693)
T PRK12739 316 IMTDPFVGRLTFFRVYSGTLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIGAAVGLKDTTTGDTLCDEKAP 395 (693)
T ss_pred EEECCCCCCEEEEECCCCEECCCCEEECCCCCCEEECCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEECCCCCC
T ss_conf 88848998178999347714699989646764224304047862687415217648976999644454137872389876
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 10156636652135777615643220257888854102742014450457546876066478999999987411133201
Q gi|254780264|r 401 IVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480 (701)
Q Consensus 401 ~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~v 480 (701)
..++++++|+|+++++|||.+++|+++|.+||++|.++||++++++|+||||++|+|+||||||||++||+++|++|+++
T Consensus 396 ~~~~~~~~p~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~eetGE~vl~g~GElHLe~~l~~L~~~f~vev~~ 475 (693)
T PRK12739 396 IILESMEFPEPVISLAVEPKSKADQDKMGIALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANV 475 (693)
T ss_pred CCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 44664457887335899848776899999999874245983699980778818999259999999999999986985475
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 05410110144421035543211589875302789997028888647981200267002433325677899999718822
Q gi|254780264|r 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLA 560 (701)
Q Consensus 481 s~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~ 560 (701)
|+|.|+|||||++.+..++++++|++++++|+++++.++|++.|.++.|.++++++++|++|+++|++||+||+++||||
T Consensus 476 s~P~V~yrETi~~~~~~~~~~~k~s~g~~~~~~v~l~~eP~~~~~~~~f~~~i~gg~ip~~~~~sv~~Gf~~a~~~GpL~ 555 (693)
T PRK12739 476 GAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLA 555 (693)
T ss_pred ECCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 16753389885045430579974269986126999997567778886675415578577888766789999999728835
Q ss_pred CCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 55033128999951116876760337999999999999848988980178999983857745799999727707974535
Q gi|254780264|r 561 GFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQEN 640 (701)
Q Consensus 561 ~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~ 640 (701)
||||+||+|+|+|+++|++++++++|++|++.|+++|+++|+|+||||||+|+|+||++++|+||++|++|||+|+++++
T Consensus 556 ~~pv~~v~~~l~d~~~h~vds~~~~f~~a~~~a~~~a~~~A~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG~i~~~~~ 635 (693)
T PRK12739 556 GYPMVDVKATLYDGSYHDVDSSEMAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIEGMEA 635 (693)
T ss_pred CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHCCCEEECEEE
T ss_conf 78555059999626504788845789999999999999855988975628999997889999999999876898756274
Q ss_pred CCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHHHHH
Q ss_conf 898399999960437338478878630863798999629040885599999999732
Q gi|254780264|r 641 RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSV 697 (701)
Q Consensus 641 ~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~~~~ 697 (701)
.+++.+|+|++|++|||||+++||++|+|+|+|+++|+||++||+++++|++++++.
T Consensus 636 ~~g~~~I~a~iPv~e~fgf~~~LR~~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~k~ 692 (693)
T PRK12739 636 RGGAQIVKAFVPLAEMFGYATDLRSATQGRATFSMEFDHYEEVPKSIAEEIIKKRKG 692 (693)
T ss_pred CCCCEEEEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 499099999988788627789988438895489999688623997899999999628
No 3
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=1409.39 Aligned_cols=685 Identities=51% Similarity=0.861 Sum_probs=664.3
Q ss_pred CCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 56710252799986878897789999999808732142201795613780889870853764079999607778713899
Q gi|254780264|r 4 KCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLT 83 (701)
Q Consensus 4 ~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iN 83 (701)
+|++||||||||+||+|||||||+|+||+++|.|++.|+|++|+||||++++||||||||+|+++||.|+ +|+||
T Consensus 2 ~~~~e~IRNi~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~-----~~~iN 76 (687)
T PRK13351 2 EMPLMQIRNIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWK-----NHRIN 76 (687)
T ss_pred CCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC-----CEEEE
T ss_conf 9986893089999179989899999999974998758715478744788299997498776215999889-----98999
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98179875528999999986045699995588888347999999987399789998176765875555666411110268
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
|||||||+||++||.+|||++||||+||||+||||+||+++||||.++++|+|+|||||||+++|++.++++++++|+.+
T Consensus 77 lIDTPGHvDF~~Ev~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~d~~~~l~~i~~~l~~~ 156 (687)
T PRK13351 77 LIDTPGHIDFTGEVERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGADLFDVLEDIEEKFGKR 156 (687)
T ss_pred EEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98097974309999999998786899997899986889999999998799859999797789987667788999984896
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
+.++|+|++.+..|.|++|+..++++.|.....+..+.....++........+++.++|.+++.||++++.|+++..++.
T Consensus 157 ~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~~ 236 (687)
T PRK13351 157 PLPLQLPIGSGDSFEGVVDLITEKELHFKEGDGGDTVEERPIPEELLEEVASAREKLIDALLEFDDELLELYLEGEEITA 236 (687)
T ss_pred EEEEEECCCCCCCCCCEEEECCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCH
T ss_conf 47786001356555641663110122002455685057725628889999999999999998308999999874887889
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89873000003101003234310001221024889898717862130001222245675210112345654201033211
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA 323 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~ 323 (701)
++++..+++...+++++|+++|||+++.|+++|||+|++++|||.++++.+..... .......|++++|++++|||+.+
T Consensus 237 ~~l~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~-~~~~~~~~~~~~p~~a~V~K~~~ 315 (687)
T PRK13351 237 EQLRAPFRRGLRSGHLVPVLFGSALKNIGIRPLLDAVVEYLPSPLEGNPPAGSKGT-EKKVLVNPDPEKPLLALVFKVQY 315 (687)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 99999999999848724123030335878588999998708992103454565666-64001457999870899999787
Q ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65467100001101334568368983265541110453210474454200356732641387444321101277884101
Q gi|254780264|r 324 DSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVL 403 (701)
Q Consensus 324 d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~~~~ 403 (701)
+++.|+++|+|||||+|++||+|+|.+.+.+++|+++|.++|++++++++|+|||||+|.|++++.+|||||++..+..+
T Consensus 316 ~~~~g~~s~~RV~sGtL~~g~~v~~~~~~~~e~i~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~~~g~tl~~~~~~~~~ 395 (687)
T PRK13351 316 DPYAGKLTYLRVYQGTLRSGSQLYNGSGRKREKVGRIFRLQGNKREEVDEAKAGDIVAVAGLKELETGDTLHDEEGNVHL 395 (687)
T ss_pred CCCCCEEEEEEEECCEECCCCEEEECCCCCEEEECCEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCEECCCCCCCCC
T ss_conf 48897589999853454579877634898359967614642677541488677988999587647568870589987568
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf 56636652135777615643220257888854102742014450457546876066478999999987411133201054
Q gi|254780264|r 404 ERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAP 483 (701)
Q Consensus 404 ~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P 483 (701)
+++++|+|+++++|||.+++|++||.+||++|.++||++++++++||||++|+|+||||||+|++||+++|++++++|+|
T Consensus 396 ~~~~~~~Pv~~vaieP~~~~d~~kL~~aL~~L~~eDPsl~v~~~eetge~vi~g~GElHLe~~l~~L~~~f~vev~vs~p 475 (687)
T PRK13351 396 EPLTFPEPVFSLAVEPERRGDEQKLAEALEKLVWEDPTLRVEEDEETGQTILSGMGELHLEIALERLRREFKLEVNTGKP 475 (687)
T ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999998516768867813688999999999853983799983754188765888999999999888871984585288
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 10110144421035543211589875302789997028888647981200267002433325677899999718822550
Q gi|254780264|r 484 YVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFP 563 (701)
Q Consensus 484 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~ep 563 (701)
.|+|||||.+++...+++++|++++++|+++++.++|+++|.++.|.+++.++.+|++|+++|++||+||+++|||||||
T Consensus 476 ~V~yrETi~~~~~~~~~~~k~~~~~~~~~~v~l~~eP~~~g~g~~~~~~~~~g~~~~~~~~aI~~G~~~a~~~GpL~g~p 555 (687)
T PRK13351 476 QVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFEFVSKVVGGAVPEELIPAVEKGIREALASGPLAGYP 555 (687)
T ss_pred CCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 30278640256422225765048876322799997246678750881465688685667789999999999639668995
Q ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEEC-CC
Q ss_conf 33128999951116876760337999999999999848988980178999983857745799999727707974535-89
Q gi|254780264|r 564 MLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQEN-RS 642 (701)
Q Consensus 564 i~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~-~~ 642 (701)
|+||+|+|+|+.+|++++++++|++|+|+||++|+++|.|+||||||+|+|+||++++|+||++|++|||+|+++++ .+
T Consensus 556 v~~v~v~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG~i~~~~~~~~ 635 (687)
T PRK13351 556 VTDLRVTVLDGKYHSVDSSESAFVKAARKAFLEAVRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGKIHGTEPIGD 635 (687)
T ss_pred EEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHCCCEEECCEECCC
T ss_conf 25069999826878888876789999999999999856988977828999996889999999999866988867274599
Q ss_pred CEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHH
Q ss_conf 8399999960437338478878630863798999629040885599999999
Q gi|254780264|r 643 VYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694 (701)
Q Consensus 643 ~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~ 694 (701)
+.+.|+|++|++|||||+++||++|||+|+|++.|+||++||++.++|++++
T Consensus 636 ~~~~I~a~vPv~e~~g~~~~LRs~T~G~a~~~~~F~~~e~vP~~~~~~v~~~ 687 (687)
T PRK13351 636 GKVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKRVGSK 687 (687)
T ss_pred CEEEEEEEECHHHHHCHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 7699999988678608668746308883699999575523999999998529
No 4
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=1410.33 Aligned_cols=670 Identities=53% Similarity=0.896 Sum_probs=650.9
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHH
Q ss_conf 86878897789999999808732142201795613780889870853764079999607778713899981798755289
Q gi|254780264|r 16 MAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTM 95 (701)
Q Consensus 16 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~ 95 (701)
|||+|||||||+|+||+++|.|+++|+|++|+||||++++||||||||+|++++|.|+ +|+|||||||||+||++
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~-----~~~iNlIDTPGHvDF~~ 75 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWK-----GHKINIIDTPGHVDFTG 75 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC-----CEEEEEEECCCCCCHHH
T ss_conf 9899888889999999965998757614389714678099997399732213889889-----98999992979751489
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCC
Q ss_conf 99999986045699995588888347999999987399789998176765875555666411110268330002345556
Q gi|254780264|r 96 EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSES 175 (701)
Q Consensus 96 Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~ 175 (701)
||++|||++||||+||||+||||+||+++||||.++++|+|+|||||||++++++.++++++++|+.+++++|+|++.+.
T Consensus 76 EV~~aLrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~~a~~~~~l~~i~~~l~~~~~~~~~Pi~~~~ 155 (670)
T PRK12740 76 EVERALRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRAGADFRRVLAQLQEALGAPVVPLQLPIGEGD 155 (670)
T ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99999998686899997899973789999999998799969999797899999899999999984898357985504788
Q ss_pred CCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEE
Q ss_conf 65302442234431145222698513874004317889999998863002345789998632778998898730000031
Q gi|254780264|r 176 NFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTI 255 (701)
Q Consensus 176 ~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~ 255 (701)
.|.|++|+++++++.|... +..+...++|+........+++.++|.+++.||++|++|+++..++.++++..+++.+.
T Consensus 156 ~f~g~iDl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~lle~i~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~ 233 (670)
T PRK12740 156 DFKGVVDLLSMKAYRYDDE--GGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEEPSEEEIKAGLRKGTR 233 (670)
T ss_pred CEEEEEECCCCEEEEECCC--CCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 4457852203568998278--99437723878899999999999999987425999999876799999999999999997
Q ss_pred CCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHH
Q ss_conf 01003234310001221024889898717862130001222245675210112345654201033211654671000011
Q gi|254780264|r 256 SVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRI 335 (701)
Q Consensus 256 ~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV 335 (701)
+++++|||||||++|.|+++|||+|++++|||.++++.+..+.... ....++++++|++++|||+.+|++.|+++|+||
T Consensus 234 ~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~e~~~~~~~~~~~~-~~~~~~d~~~p~~a~VfK~~~d~~~G~i~~~RV 312 (670)
T PRK12740 234 AGSIVPVFCGSALKNKGVQRLLDAVVDYLPSPTEVPPRLGTDGEDE-EPVLAPDPDGPLSALVFKTMDDPFVGKLSLVRV 312 (670)
T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCC-CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEE
T ss_conf 0975789862543577889999999987899254254114477776-321457999982899998478588974899998
Q ss_pred HCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 01334568368983265541110453210474454200356732641387444321101277884101566366521357
Q gi|254780264|r 336 YSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQI 415 (701)
Q Consensus 336 ~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~~~~~~~~~~~Pvv~v 415 (701)
|||+|++||+|+|...++++||+++|.++|++++++++++|||||+|.|++++.+||||+++..+..++++++|+|++++
T Consensus 313 ~sG~L~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~~tgdTL~~~~~~~~~~~~~~~~Pv~~v 392 (670)
T PRK12740 313 YSGTLKKGDTLLNSTTGKKERVGRLYRMHGKQQEEIDEAVAGDIVAVVKLKEAATGDTLCDKGDPILLEPMEFPEPVISL 392 (670)
T ss_pred ECCEECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 36675589989835875158712357871576248899805978998456666358861078877656777789986306
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCE
Q ss_conf 77615643220257888854102742014450457546876066478999999987411133201054101101444210
Q gi|254780264|r 416 AIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSC 495 (701)
Q Consensus 416 aIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V~yrEti~~~~ 495 (701)
+|||.+++|++||.+||++|.++||+|++.+++||||++|+|+||||||||++||+++|++++++|+|.|+|||||.+++
T Consensus 393 aieP~~~~d~~kL~~~L~~L~~eDPsl~v~~~~etge~vl~g~GElHLei~l~~Lr~~f~iev~~s~P~V~yrETi~~~~ 472 (670)
T PRK12740 393 AIEPKDKGDEEKLSEALGRLAEEDPTLRVEQDEETGETILSGMGELHLEVALERLKRKYGVEVETGPPQVPYRETIRKAA 472 (670)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCC
T ss_conf 88857821799999999977741895599981777127998379899999999998986966998368346899841441
Q ss_pred EEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 35543211589875302789997028888647981200267002433325677899999718822550331289999511
Q gi|254780264|r 496 VHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGD 575 (701)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~ 575 (701)
..+++|+||+||++||+++++.++|+++|.++.|++++++|++|++|+++|++||+||+++||||||||+||+|+|+|++
T Consensus 473 ~~~~~~kkqsgg~gq~~~v~~~~eP~~~g~g~~f~~~i~gg~ip~~~~~ai~~G~~~a~~~GpL~g~pv~~v~v~l~dg~ 552 (670)
T PRK12740 473 EGHGRHKKQSGGHGQFGDVWLEIEPLPRGSGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGFPVVDVKVTLTDGS 552 (670)
T ss_pred CCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
T ss_conf 24405777417864045899997357888774798740388567888999998999999729757896533599998467
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHH
Q ss_conf 16876760337999999999999848988980178999983857745799999727707974535898399999960437
Q gi|254780264|r 576 YHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSC 655 (701)
Q Consensus 576 ~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e 655 (701)
+|.+||++++|+.|+++||++|+++|+|+||||||+|+|+||++++|.|+++|++|||+|+++++..++.+|+|++|++|
T Consensus 553 ~h~vdSs~~af~~A~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG~i~~~~~~~g~~~I~a~vP~~e 632 (670)
T PRK12740 553 YHSVDSSEMAFKIAARLAFREAMPKAKPVLLEPIMRVEVSVPEEFVGDVIGDLSGRRGQILGMEAEGGWDVVRAEVPLAE 632 (670)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEEECCCEEEEEEEECHHH
T ss_conf 15778737899999999999999866988976818999997889999999999876988757374299599999988788
Q ss_pred HCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHH
Q ss_conf 33847887863086379899962904088559999999
Q gi|254780264|r 656 MFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQE 693 (701)
Q Consensus 656 ~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~ 693 (701)
||||+++||++|+|+|+|+++|+||++||+++++++++
T Consensus 633 ~~g~~~~LRs~T~G~a~~~~~f~~y~~vp~~~~~~~i~ 670 (670)
T PRK12740 633 MFGYATDLRSLTQGRGSFTMEFSHYEEVPGNVAEKVIA 670 (670)
T ss_pred HHCHHHHHHHHCCCCEEEEEEECCCEECCCCHHHHHHC
T ss_conf 61678986742888468999948732688266748529
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1370.85 Aligned_cols=693 Identities=60% Similarity=0.982 Sum_probs=667.3
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999607778713
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
|++.+.++++|||+|+||+|||||||+|+|||++|.|+++|++++|+++|||+++||||||||+|+++|+.|++ ++
T Consensus 1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~----~~ 76 (697)
T COG0480 1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG----DY 76 (697)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECC----CE
T ss_conf 96645544540799996047880778899998759757785566786547887889866977864056899708----65
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89998179875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
+|||||||||+||+.||+||||++||||+||||++|||+||+++||||.++++|+|+|||||||+++|++.++++++.+|
T Consensus 77 ~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l 156 (697)
T COG0480 77 RINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERL 156 (697)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 89995799735347787998886165099998878830037999999865599759999784335567335099999986
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26833000234555665302442234431145222698513874004317889999998863002345789998632778
Q gi|254780264|r 161 GANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 (701)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~ 240 (701)
+.++.++|.|++.++.|.||+|+.+++++.|+. +..+....+|........++|..+++.+++.||++|++|++++.
T Consensus 157 ~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e 233 (697)
T COG0480 157 GANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEE 233 (697)
T ss_pred CCCCEEEECCCCCCCCCCCEEEHHHCCEEEECC---CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 798322321115730047636711067179757---75243155877887678999999999886157999999866887
Q ss_pred CCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCC-CCCCCCCCCCCCCEECC
Q ss_conf 99889873000003101003234310001221024889898717862130001222245675-21011234565420103
Q gi|254780264|r 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNS-EIDVSAVDSSPLSMLAF 319 (701)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~v~ 319 (701)
++.+++++.+++.++.+.++|++||||++|.|+++|||+|++|||||.+++.+.+....+.. ......++++|++|+||
T Consensus 234 ~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf 313 (697)
T COG0480 234 PTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF 313 (697)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEE
T ss_conf 64799999998765326625677501025775799999999878995664544476775323000046888886599999
Q ss_pred CCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 32116546710000110133456836898326554111045321047445420035673264138744432110127788
Q gi|254780264|r 320 KVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSR 399 (701)
Q Consensus 320 K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~ 399 (701)
|+..|++.|+++|+|||||+|++||.++|.+++++++|++++.|+|++++++++++|||||++.||+++.+|||+|+...
T Consensus 314 Ki~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~ 393 (697)
T COG0480 314 KIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENK 393 (697)
T ss_pred EEEECCCCCEEEEEEEECCEECCCCEEEECCCCCCEEEEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCEEECCCC
T ss_conf 96864878759999986437737988995799853787789871689502605405764899975235540785653787
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 41015663665213577761564322025788885410274201445045754687606647899999998741113320
Q gi|254780264|r 400 PIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN 479 (701)
Q Consensus 400 ~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~ 479 (701)
++++..+.||+||++++|||++++|++||.+||++|+++||+++++.|+||||++|+||||||||+++++|+++|+||+.
T Consensus 394 ~v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~vev~ 473 (697)
T COG0480 394 PVILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVE 473 (697)
T ss_pred CCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEE
T ss_conf 64656654799648999767884358999999998775388458998177661899826555499999987764192589
Q ss_pred ECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10541011014442103554321158987530278999702888864798120026700243332567789999971882
Q gi|254780264|r 480 VGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPL 559 (701)
Q Consensus 480 vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL 559 (701)
+++|.|+|||||++++...++|+||+++++||+++.+.+||+++|.++.|.+++.++.+|++|+++|++||+|++++|||
T Consensus 474 ~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpL 553 (697)
T COG0480 474 VGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPL 553 (697)
T ss_pred ECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 34981688866146654303453036889855379999975898764177500055767266547789999999855987
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 25503312899995111687676033799999999999984898898017899998385774579999972770797453
Q gi|254780264|r 560 AGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE 639 (701)
Q Consensus 560 ~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~ 639 (701)
+||||+|++|+|.|+.+|++||++++|++|++.|+++|+++|+|+||||||+|+|.+|++++|.|+++|++|||+|++++
T Consensus 554 ag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~ 633 (697)
T COG0480 554 AGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGME 633 (697)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCHHHHCHHHHHHHHCCEEEECCE
T ss_conf 89715726999974750468888889999999999999860786685552799997434652316876631515984304
Q ss_pred CC--CCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHHHHHHCC
Q ss_conf 58--98399999960437338478878630863798999629040885599999999732026
Q gi|254780264|r 640 NR--SVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKS 700 (701)
Q Consensus 640 ~~--~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~~~~~~~ 700 (701)
.. +++.+|+|++|++|||||+++||++|+|+|.|++.|+||++||.+.+++++++++.+++
T Consensus 634 ~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~ 696 (697)
T COG0480 634 QRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKG 696 (697)
T ss_pred ECCCCCEEEEEEEECHHHHCCCHHHHHHHCCCCEEEEEEECCCEECCHHHHHHHHHHHHHHCC
T ss_conf 226884599999836688545336667545686169997351273788899999999654317
No 6
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=1363.29 Aligned_cols=696 Identities=58% Similarity=0.957 Sum_probs=683.2
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEC--CCCEECCCHHHHHHHCCCEEEEEEEEEECC-CCC
Q ss_conf 98656710252799986878897789999999808732142201--795613780889870853764079999607-778
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH--DGSATMDWMEQEQERGITITSASTTVFWPG-RDG 77 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~--~g~~~~D~~~~E~eRgITi~ss~~sl~~~~-~~~ 77 (701)
|+++.+++++|||+|.||+|+||||++|++|+++|.+|++|+++ +|.+.||||++||||||||.|++++..|++ ...
T Consensus 1 maR~~~~~~~RNiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~ 80 (705)
T TIGR00484 1 MARTTDLEKLRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQ 80 (705)
T ss_pred CCCCCCHHHCCCCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHC
T ss_conf 96556523305543278633887320101000137501000001678851123123003587142100110102101000
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC
Q ss_conf 71389998179875528999999986045699995588888347999999987399789998176765875555666411
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMIS 157 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~ 157 (701)
-.|.||+|||||||||.-||+|+||+.||||.|.||+.||++||++||||+.+..+|+|+|+|||||.+++++.+.++|+
T Consensus 81 ~~~~~N~IDTPGHVDFT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~ 160 (705)
T TIGR00484 81 YDHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLK 160 (705)
T ss_pred CCCEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 14037887378941257885201225645665333026866411567765432688628997155645787889999999
Q ss_pred CCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11026833000234555665302442234431145222698513874004317889999998863002345789998632
Q gi|254780264|r 158 SRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQ 237 (701)
Q Consensus 158 ~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~ 237 (701)
.+|+.++.++|+|+|.++.|.|+||++.++++.|.+...+......++|+++.+...+.++.|+|.+++.+|+||+.||+
T Consensus 161 ~rL~~~~~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~ 240 (705)
T TIGR00484 161 SRLGANAVPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLE 240 (705)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 87467734664112566563104554301567750677664001222647899999999999999884200788998508
Q ss_pred CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCC-CCCCCCCCCCCCCCCE
Q ss_conf 778998898730000031010032343100012210248898987178621300012222456-7521011234565420
Q gi|254780264|r 238 GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS-NSEIDVSAVDSSPLSM 316 (701)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~ 316 (701)
|++++.++++..+|.+++..+++||+||||++|+|++.|||||++|||+|.+....++.+... +.+...+.+++.|+++
T Consensus 241 G~e~~~~~ik~~~r~g~l~~~~~pv~~GSafKNKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~sd~~~f~~ 320 (705)
T TIGR00484 241 GEELTIEEIKNAIRKGVLNLELIPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKASDEEPFVA 320 (705)
T ss_pred CCCCCHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 96536899988875131124688887503300025888999999747897431543023556677613675156765122
Q ss_pred ECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 10332116546710000110133456836898326554111045321047445420035673264138744432110127
Q gi|254780264|r 317 LAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCD 396 (701)
Q Consensus 317 ~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~ 396 (701)
+.||+..|||+|+++|+|||+|.|..|+.|.|+.+.+++|+++|..||++.+++++++.||||||+.||+++.+|||||+
T Consensus 321 LAFK~~tdpfvG~LTf~RvY~G~l~~G~~v~Ns~~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~~Glkd~~TGdTl~d 400 (705)
T TIGR00484 321 LAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKSKKERVGRLVKMHANKREEIKEVRAGDIAAAIGLKDTTTGDTLCD 400 (705)
T ss_pred EEEEECCCCCCCEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCC
T ss_conf 34564058731127899997615127977760200001443233310037721001213563688731300256763225
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 78841015663665213577761564322025788885410274201445045754687606647899999998741113
Q gi|254780264|r 397 PSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKV 476 (701)
Q Consensus 397 ~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~i 476 (701)
++..+.++.|.||+||+.+||+|++.+|.+||..||.+|++|||++++..|+||||+++.||||||||++++||+++|++
T Consensus 401 ~~~~~~le~M~fp~PVI~~avePK~Kad~~kM~~AL~~la~EDP~F~~~~~~E~g~TiI~GMGELHL~i~vdRmkREFkv 480 (705)
T TIGR00484 401 EKADVILESMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDEETGQTIIAGMGELHLDIIVDRMKREFKV 480 (705)
T ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHCCEEEE
T ss_conf 64200010025888716887558874355679999875322488604775274444132031045677886652100334
Q ss_pred CCEECCCCCCCCCCCCCCEE-EEEEEECCCCCCCCCEEEEEEECCCCCC---CEEEECCEEECCEEHHHHHHHHHHHHHH
Q ss_conf 32010541011014442103-5543211589875302789997028888---6479812002670024333256778999
Q gi|254780264|r 477 DANVGAPYVSYRESVTKSCV-HDYIHKKQSGGAGQFAKVKIAFEPNPDG---DDFVFESKIVGGAIPKEYIPGVRKGIES 552 (701)
Q Consensus 477 ei~vs~P~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~v~~~~eP~~~g---~~~~f~~~~~~~~~~~~~~~~v~~g~~~ 552 (701)
|+.++.|.|+||||+...+. .++.|.|||||.|||+.|.+.++|++.+ .+++|+|.++||.+|+||+++|.+|++.
T Consensus 481 E~~~G~PQVayRET~~~~~~~~e~k~~kQSGGrGQyG~V~i~~~P~~~~~~~~gyEF~n~I~GGviP~EYIp~v~~G~~~ 560 (705)
T TIGR00484 481 EANVGAPQVAYRETIRSKAEDVEGKYAKQSGGRGQYGHVVIELEPLEPEEGGKGYEFVNEIKGGVIPREYIPAVDKGLQE 560 (705)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 33058683034554311123213503230689873016899861277788876422533034860773210367777999
Q ss_pred HHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 99718822550331289999511168767603379999999999998489889801789999838577457999997277
Q gi|254780264|r 553 MLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRR 632 (701)
Q Consensus 553 a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rr 632 (701)
++++|||+||||.|++++|.||+||++||++++|++|+..|+++|..+|+|.||||||+++|.+|++|.|.++++|++||
T Consensus 561 a~~~G~LaGyP~vD~k~~l~dG~yH~VDSse~AFk~Aas~A~k~a~~~a~PvlLEPiMkvev~~P~ey~Gd~~Gdl~~RR 640 (705)
T TIGR00484 561 ALESGPLAGYPVVDIKVTLFDGSYHDVDSSELAFKLAASLAFKEAVKKANPVLLEPIMKVEVEVPEEYMGDVIGDLSRRR 640 (705)
T ss_pred HHHCCCEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCHHCCCCCCC
T ss_conf 98469732143476478885175231162789999999999998676359745446027887558520151000100035
Q ss_pred EEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHHHH
Q ss_conf 0797453589839999996043733847887863086379899962904088559999999973
Q gi|254780264|r 633 GQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYS 696 (701)
Q Consensus 633 g~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~~~ 696 (701)
|.|.+.+.......|.|.+|+.|||||+|+|||.|||+|.|+|+|+||..+|...+++|+++.+
T Consensus 641 g~~~g~~~~~~~~~v~A~VPL~EMFGyaT~LRS~tqGr~~y~M~~~~Y~e~P~~v~~e~~~~~~ 704 (705)
T TIGR00484 641 GIIEGSEERGNVQVVKAEVPLSEMFGYATDLRSSTQGRGEYSMEFLHYGEVPSSVAEEIIEKRK 704 (705)
T ss_pred CEEEEEECCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHC
T ss_conf 1142000237356899850603222303233205677226886323321232789999998626
No 7
>KOG0465 consensus
Probab=100.00 E-value=0 Score=1226.92 Aligned_cols=682 Identities=50% Similarity=0.856 Sum_probs=653.6
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
-+.++||||+|+||+|+||||++|++||++|.+++.|+|+.+.+.||++++||+|||||+|+++++.|. ++.||+
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-----~~~iNi 108 (721)
T KOG0465 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-----DYRINI 108 (721)
T ss_pred CCHHHHCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEEC-----CCEEEE
T ss_conf 745451003169998269851102001302201002320267604642777865384464121566404-----520678
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 81798755289999999860456999955888883479999999873997899981767658755556664111102683
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANP 164 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~ 164 (701)
||||||+||.-||+||||+.||||+|+|++.||++||++||||+.+.++|.|.|||||||.++++...+++|+.+|+.++
T Consensus 109 IDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~ 188 (721)
T KOG0465 109 IDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKP 188 (721)
T ss_pred ECCCCCEEEEEEEHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCH
T ss_conf 54897215797720025205672899970365111356898888761897599986166447974889999986227860
Q ss_pred CEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 30002345556653024422344311452226985138740043178899999988630023457899986327789988
Q gi|254780264|r 165 LVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSD 244 (701)
Q Consensus 165 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~ 244 (701)
+.+|+|++.++.|.|++|++..++++|..... ......++|+++.......|+.++|.+++.||.+.+.||+++.++.+
T Consensus 189 a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g-~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~ 267 (721)
T KOG0465 189 AVVQIPIGSESNFKGVVDLVNGKAIYWDGENG-EIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQ 267 (721)
T ss_pred HEEECCCCCCCCCHHHHHHHHCEEEEECCCCC-CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 22676414454431477463225899718987-54685569878999999999999999861168999998525899989
Q ss_pred HHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCC-CCCCCCCCCCC-CCCEECCCCC
Q ss_conf 987300000310100323431000122102488989871786213000122224567-52101123456-5420103321
Q gi|254780264|r 245 RIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSN-SEIDVSAVDSS-PLSMLAFKVM 322 (701)
Q Consensus 245 ~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~-pl~~~v~K~~ 322 (701)
.++.++|+.++.+.|+|||||||++|+|+|+|||+|++|||||.|+.++...+...+ ....+....++ ||+++.||+.
T Consensus 268 ~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle 347 (721)
T KOG0465 268 QLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLE 347 (721)
T ss_pred HHHHHHHHHHHHCCEEEEEECHHHCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEE
T ss_conf 99999998875155246775322235674158999987679936624510256788866467522788996033577764
Q ss_pred CCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf 165467100001101334568368983265541110453210474454200356732641387444321101277-8841
Q gi|254780264|r 323 ADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDP-SRPI 401 (701)
Q Consensus 323 ~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~-~~~~ 401 (701)
.+++ |.++|+|||+|+|++||.+||..+++++|+++|+.|+++..++|++++|||||++.|+ ++.+|||+++. ....
T Consensus 348 ~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~ 425 (721)
T KOG0465 348 EGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLAL 425 (721)
T ss_pred ECCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEHHHHHHHCCCCCCCCCEEECCCEEEEECC-CCCCCCEECCCCCCCC
T ss_conf 1674-5269999862166478678734778544667787750254452000102766888523-3356871226765661
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 01566366521357776156432202578888541027420144504575468760664789999999874111332010
Q gi|254780264|r 402 VLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVG 481 (701)
Q Consensus 402 ~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs 481 (701)
.++.|++|+||+.+||+|.+.+|.++|.+||.++.+|||++++..|+|+||++++||||||||+..+||+++|++++.++
T Consensus 426 ~m~si~vPePVis~aikP~sk~d~~~fskaL~rf~~EDPtFrv~~D~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~G 505 (721)
T KOG0465 426 SMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELG 505 (721)
T ss_pred EEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 25676669872788732367441789999997642249955888656556420104303568999999999858964028
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCC--EEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 54101101444210355432115898753027899970288886--4798120026700243332567789999971882
Q gi|254780264|r 482 APYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGD--DFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPL 559 (701)
Q Consensus 482 ~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~--~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL 559 (701)
+|.|+|||||+.++.-+++||||+||.+||+++.=.++|++.+. +++|.+++.|+++|++|++++++||..+++.|||
T Consensus 506 kp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L 585 (721)
T KOG0465 506 KPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPL 585 (721)
T ss_pred CCEEEEHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 83365201217755431440246688765451146876248988723899713668988555778898899999856975
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 25503312899995111687676033799999999999984898898017899998385774579999972770797453
Q gi|254780264|r 560 AGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE 639 (701)
Q Consensus 560 ~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~ 639 (701)
.|.|+.|++|+|.||.+|.+||++.+|+.|++-|+++|+.+|+|++|||||.++|.+|+|++|.|.++|++|+|.|.+.+
T Consensus 586 ~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d 665 (721)
T KOG0465 586 IGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGID 665 (721)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 68702451899834886766500799999999999999874894021010135784654552356544554463795124
Q ss_pred CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHHHHHHHH
Q ss_conf 5898399999960437338478878630863798999629040885599999999
Q gi|254780264|r 640 NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694 (701)
Q Consensus 640 ~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~ 694 (701)
...++++|.|.+|+.+||||+++||++|+|+|-|+|+|++|+++|.+.+++++.+
T Consensus 666 ~~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMeys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465 666 SSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 7784399995266788743346645552686437874112478966789875116
No 8
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=0 Score=1211.80 Aligned_cols=652 Identities=31% Similarity=0.475 Sum_probs=551.9
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
.++||||||||+||+|||||||+|+|||++|.|++ ++++++|+||++++||+|||||+|+++|+.|+ .++++|+|||
T Consensus 15 ~~pe~IRNI~IiaHvdaGKTTLtE~lL~~sg~i~~--~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~-~~~~~~~INl 91 (730)
T PRK07560 15 RNPEQIRNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGKQLALDYDEEEQARGITIKAANVSMVHE-YEGKEYLINL 91 (730)
T ss_pred HCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCEECCCHHHHHHCCCCEEECCEEEEEE-ECCCCEEEEE
T ss_conf 18763528999937998989999999996499865--34798641788599997298575211028987-5698378999
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 81798755289999999860456999955888883479999999873997899981767658755556664111102683
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANP 164 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~ 164 (701)
||||||+||++||.+|||++||||+||||++||++||+++||||.++++|+++|||||||+++|++..+++++.+|....
T Consensus 92 IDTPGh~DF~~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~~~~l~~~~~~~~~~l~~~i 171 (730)
T PRK07560 92 IDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRLIKELKLTPQEMQQRLLKII 171 (730)
T ss_pred ECCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 81969730599999999885878999978988773189999999877999799986866235553779899988898899
Q ss_pred CEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCC
Q ss_conf 30002345556653024422344311452226985138740043178899999988630------023457899986327
Q gi|254780264|r 165 LVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIES------IVELDDSAMDSYLQG 238 (701)
Q Consensus 165 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~------i~~~dd~~~~~~l~~ 238 (701)
..++..+. .+....+...|... +........++.+.+... .....+++++.|..+
T Consensus 172 ~~~~~~i~-----------------~~~~~~~~~~~~~~--~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~ei~~~~~~~ 232 (730)
T PRK07560 172 KDVNKLIE-----------------GYAPEEFKEKWKVD--VADGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKG 232 (730)
T ss_pred HHHHHHHH-----------------HCCCHHHCCCEEEC--CCCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 99999998-----------------63715537550524--433420544234275234699987187778999998531
Q ss_pred CCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCC------CCCCCCCCCC
Q ss_conf 7899889873000003101003234310001221024889898717862130001222245675------2101123456
Q gi|254780264|r 239 ESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNS------EIDVSAVDSS 312 (701)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~------~~~~~~~~~~ 312 (701)
. +....+ ..|+ .+.|||++++++|||.++++++...++.+. .....+++++
T Consensus 233 ~------~~~l~~-------~~pl----------~~~lld~i~~~lPsP~ea~~~ri~~~~~g~~~~~~~~~~~~~d~~~ 289 (730)
T PRK07560 233 K------VKELAE-------KAPL----------HEVVLDMVIKHLPNPLEAQKYRIPKIWKGDLNSEIGKAMLNCDPNG 289 (730)
T ss_pred H------HHHHHH-------HCCH----------HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCC
T ss_conf 2------888765-------3847----------9999999998689957722103564457887651010122048998
Q ss_pred CCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 54201033211654671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r 313 PLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD 392 (701)
Q Consensus 313 pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd 392 (701)
|++++|||+..||+.|+++|+|||||+|+.||+|+|.+++.++||+++|.++|+++.++++|.|||||+|.||+++.+||
T Consensus 290 pl~~~vfK~~~dp~~g~is~~RV~sG~L~~g~~v~n~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~ai~gL~~~~tGd 369 (730)
T PRK07560 290 PLVMMVTKIIVDPHAGEVATGRVFSGTIRRGQEVYLVGAKKKARVQQVGIYMGPEREEVDEIPAGNIAAVTGLKDARAGE 369 (730)
T ss_pred CCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 71457754556698864899998434664798754047774125215787206965781051678789995665541166
Q ss_pred CCCCCCCCCC-CCCCCC-CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 0127788410-156636-65213577761564322025788885410274201445045754687606647899999998
Q gi|254780264|r 393 TLCDPSRPIV-LERMDF-PEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRM 470 (701)
Q Consensus 393 Tl~~~~~~~~-~~~~~~-~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L 470 (701)
|||+...+.. +.++.+ |+|+++++|||++++|++||.+||++|.++||+|++.+|+||||++|+||||||||+|++||
T Consensus 370 Tl~~~~~~~~~~~~~~~~~~Pv~~~aIeP~~~~D~~kL~~aL~~L~~eDPsl~v~~d~etge~vl~gmGElHLei~~~rL 449 (730)
T PRK07560 370 TVVSPEYKMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLQVKINEETGEHLLSGMGELHLEVITYRI 449 (730)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 54258767765222455899659999602886679999999999884197489998377880999962899999999999
Q ss_pred HHHCCCCCEECCCCCCCCCCCCCCEEE-----EEEEE----------CCCCCCCCCEEEEEEECCCCCCC----------
Q ss_conf 741113320105410110144421035-----54321----------15898753027899970288886----------
Q gi|254780264|r 471 LREFKVDANVGAPYVSYRESVTKSCVH-----DYIHK----------KQSGGAGQFAKVKIAFEPNPDGD---------- 525 (701)
Q Consensus 471 ~~~f~iei~vs~P~V~yrEti~~~~~~-----~~~~~----------~~~~~~~~~~~v~~~~eP~~~g~---------- 525 (701)
+++|+|++++|+|.|+|||||++++.. ...|+ .+.+++.+++++...++|.+++.
T Consensus 450 ~~~f~vev~~~~p~V~YrETI~~~~~~~~~ks~~~h~~~~i~~epl~~~~~~~~~~g~v~~~~~p~~~~~~l~~~g~~~~ 529 (730)
T PRK07560 450 KRDYGVEVVTSEPIVVYRETVRGKSQVVEGKSPNKHNRFYITVEPLDEEVIEAIKEGEISEDMDPKERAKILREAGMDKD 529 (730)
T ss_pred HHHHCCCEEECCCEEEEEEEECCCCCCEECCCCCCCCEEEEEEEECCHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCHH
T ss_conf 99848523654976778864156655100116887646999997476443103305555113482666556665177644
Q ss_pred ----------EEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEC--CCCCCHHHHHHHHHHH
Q ss_conf ----------4798120026700243332567789999971882255033128999951116--8767603379999999
Q gi|254780264|r 526 ----------DFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYH--DVDSSVLAFEIAARAC 593 (701)
Q Consensus 526 ----------~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~--~~~s~~~~~~~a~~~a 593 (701)
++.|.+.+.++.++++++++|++||+||+++||||||||+||+|+|.|+++| .+++++++|+.|++.|
T Consensus 530 ~~~~v~~~~~~ni~~d~~~g~~~~~~~~~~v~~G~~~a~~~GpL~g~Pv~~v~v~l~dg~~h~d~v~~~~~~~~~A~~~a 609 (730)
T PRK07560 530 EAKGVWAIYNGNVFIDMTKGIQYLRETMELIIEGFREAMKEGPLAKEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNA 609 (730)
T ss_pred HHCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 42050231267455564767555798999999999999955986676556679999974211563445637899999999
Q ss_pred HHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEE
Q ss_conf 99999848988980178999983857745799999727707974535898399999960437338478878630863798
Q gi|254780264|r 594 FREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQY 673 (701)
Q Consensus 594 ~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~ 673 (701)
|++|+++|+|+||||||+++|.||++++|.|+++|++|||+|+++++.+++++|+|++|++|||||+++||++|||+|+|
T Consensus 610 ~~~a~~~a~p~LLEPi~~~eI~~P~~~~G~V~~dL~~RRG~I~~~~~~~~~~~I~A~vPlae~~gy~~~LRs~T~G~g~~ 689 (730)
T PRK07560 610 IFAAMLSAKPTLLEPIQKVDINVPQDYMGAVTSEIQGRRGKILDMTQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRAFW 689 (730)
T ss_pred HHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEECCCCCEEEEEEECHHHHCCHHHHHHHHCCCCCEE
T ss_conf 99999877988985668999998889987999999867958835223699199999977898628289999668897169
Q ss_pred EEEECCEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 9996290408855999999997320269
Q gi|254780264|r 674 TMIFDHYAPVPAHVSKEIQEKYSVVKSA 701 (701)
Q Consensus 674 ~~~F~~~~~vp~~~~~~~~~~~~~~~~~ 701 (701)
+|+|+||++||.+.+++|+++++.||.+
T Consensus 690 ~~~F~~y~~vp~~~~~~ii~~~r~rkg~ 717 (730)
T PRK07560 690 STEFAGFEPVPDSLLPDIVKQIRERKGL 717 (730)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9995886269988999999999986698
No 9
>KOG0469 consensus
Probab=100.00 E-value=0 Score=1086.53 Aligned_cols=672 Identities=27% Similarity=0.407 Sum_probs=579.4
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECC-----------C
Q ss_conf 10252799986878897789999999808732142201795613780889870853764079999607-----------7
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG-----------R 75 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~-----------~ 75 (701)
..||||+++||||||||+||+|+|+..+|+|+. ...+++||||++++||||||||||++|||+++- .
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~--akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISA--AKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHCEEEE--CCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 235442048998437855006778776151241--226785124341015655657632013201213176799851778
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 78713899981798755289999999860456999955888883479999999873997899981767658755556664
Q gi|254780264|r 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEM 155 (701)
Q Consensus 76 ~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~ 155 (701)
++.+++|||||+||||||++||++|||+.|||++||||++|||.||++|+|||..+++++++|+|||||...+++..-++
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCHHH
T ss_conf 77633689516898545234423104732670899972474485259999999874335247741466788861378999
Q ss_pred HCCCCC-----C---------------CCCEECCCCCCCCCCCEEEEEHHHH----------------HHCCCCCCCCC-
Q ss_conf 111102-----6---------------8330002345556653024422344----------------31145222698-
Q gi|254780264|r 156 ISSRLG-----A---------------NPLVIQLPVGSESNFQGVIDLVEMK----------------ALLWKNEDLGS- 198 (701)
Q Consensus 156 i~~~l~-----~---------------~~~~~~~p~~~~~~~~g~id~~~~~----------------~~~~~~~~~~~- 198 (701)
+.+.|. . ...|....+++++.++||.+.+.++ ..+|++.+++.
T Consensus 174 Lyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~k 253 (842)
T KOG0469 174 LYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPK 253 (842)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999999732317998414677673475377771100355411454599999999998287699999976401356866
Q ss_pred --CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC------------------EEECCE
Q ss_conf --513874004317889999998863002345789998632778998898730000------------------031010
Q gi|254780264|r 199 --SWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRL------------------GTISVK 258 (701)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~------------------~~~~~~ 258 (701)
+|+........+...+.|..++++||++..|.+|+. ..+++...+++ ...+++
T Consensus 254 tkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~-------kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~ 326 (842)
T KOG0469 254 TKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNF-------KKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRK 326 (842)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHC-------CHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHH
T ss_conf 77643323454468555641577603689999998601-------28889999997413312520366543899999997
Q ss_pred EEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCC------CCCCCCCCCCEECCCCCCCCCCCCE-E
Q ss_conf 03234310001221024889898717862130001222245675210------1123456542010332116546710-0
Q gi|254780264|r 259 FFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEID------VSAVDSSPLSMLAFKVMADSFVGSL-T 331 (701)
Q Consensus 259 ~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~------~~~~~~~pl~~~v~K~~~d~~~G~~-a 331 (701)
|.|- -+.||++|.-|||||..+|+||...+|+++..+ ..|++++|++|||+||.+.++.||+ |
T Consensus 327 wLPA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyA 396 (842)
T KOG0469 327 WLPA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYA 396 (842)
T ss_pred HCCH----------HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEE
T ss_conf 4562----------888999998528990578888898761188735776676526999872775640165578742799
Q ss_pred HHHHHCCCCCCCCEEEEEC----CCCCC-----EEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC-CCCCCCCCC
Q ss_conf 0011013345683689832----65541-----1104532104744542003567326413874443211-012778841
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTV----KGKKE-----RVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD-TLCDPSRPI 401 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~----~~~~~-----kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd-Tl~~~~~~~ 401 (701)
|+|||||++..|+++++.+ +|+++ .|++..+|||+..++++.++||||+++.|++++..+. ||++.+..+
T Consensus 397 FGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AH 476 (842)
T KOG0469 397 FGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAH 476 (842)
T ss_pred EEEEECCEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCEEEHHHHC
T ss_conf 73344230136857887589989970888889899999998626555456698875777851667643047232055412
Q ss_pred CCCCCCCC-CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHC-CCCCE
Q ss_conf 01566366-52135777615643220257888854102742014450457546876066478999999987411-13320
Q gi|254780264|r 402 VLERMDFP-EPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREF-KVDAN 479 (701)
Q Consensus 402 ~~~~~~~~-~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f-~iei~ 479 (701)
++..|+|+ +||++|+||++||.|+|||.+||++|+++||.+.+..+ |+|||+++|.||||||+|++||.+.+ +|.++
T Consensus 477 NmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~-esGehiiAgaGeLHLEICLkDLeedhA~iPlk 555 (842)
T KOG0469 477 NMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPLK 555 (842)
T ss_pred CCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 31478862264189998327834648899999877426984999962-68854785155021798876676500477400
Q ss_pred ECCCCCCCCCCCCCCEEEEEEEECCCCCC-------------------------------------------CCCEEEEE
Q ss_conf 10541011014442103554321158987-------------------------------------------53027899
Q gi|254780264|r 480 VGAPYVSYRESVTKSCVHDYIHKKQSGGA-------------------------------------------GQFAKVKI 516 (701)
Q Consensus 480 vs~P~V~yrEti~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~v~~ 516 (701)
.|+|.|+||||+++.+......| ..+.| --+++..|
T Consensus 556 ~sdPvVsYrEtvs~~ss~~~lsK-SpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIW 634 (842)
T KOG0469 556 KSDPVVSYRETVSEESSQTCLSK-SPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIW 634 (842)
T ss_pred CCCCEEEEECCCCCCCCHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEEE
T ss_conf 58980563200255100245315-98624636885035872144565348658167899999988987287515332346
Q ss_pred EECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHH--HHHHHHH
Q ss_conf 97028888647981200267002433325677899999718822550331289999511168767603379--9999999
Q gi|254780264|r 517 AFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFE--IAARACF 594 (701)
Q Consensus 517 ~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~--~a~~~a~ 594 (701)
+|+|...|.|+. .+.+++.++..+++++|..||+||+++|||++|.||||||.|+|..+|.+.+++|..| +.+|+++
T Consensus 635 CfgPd~tg~Nll-~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ 713 (842)
T KOG0469 635 CFGPDGTGPNLL-VDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVL 713 (842)
T ss_pred EECCCCCCCCEE-EECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHHHCCCCEECHHHHHHH
T ss_conf 767899997378-8521266899988898988877775068741001023057766656664456527870362789999
Q ss_pred HHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEE--CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEE
Q ss_conf 999984898898017899998385774579999972770797453--589839999996043733847887863086379
Q gi|254780264|r 595 REAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE--NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQ 672 (701)
Q Consensus 595 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~--~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~ 672 (701)
+++++.|+|+|+||+|.+||+||+.++|.||++|++|||++.+++ ++++++.|+||+||-|||||..|||+.|.|+|+
T Consensus 714 ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAf 793 (842)
T KOG0469 714 YASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAF 793 (842)
T ss_pred HHHHHHCCCEECCCEEEEEEECCHHHHCHHHHEEECCCCCEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCC
T ss_conf 99887158621174689998671453021120100155420011216898626899985224344664655316677655
Q ss_pred EEEEECCEEECCHHHHH------HHHHHHHHHCC
Q ss_conf 89996290408855999------99999732026
Q gi|254780264|r 673 YTMIFDHYAPVPAHVSK------EIQEKYSVVKS 700 (701)
Q Consensus 673 ~~~~F~~~~~vp~~~~~------~~~~~~~~~~~ 700 (701)
+|+.||||+++||++.+ +++.+.|.||.
T Consensus 794 pq~vFdHws~lpgdp~dp~sk~~~iV~~~RKrkg 827 (842)
T KOG0469 794 PQMVFDHWSILPGDPLDPTSKPGQIVLATRKRKG 827 (842)
T ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 4024310333799988987661079999987617
No 10
>KOG0468 consensus
Probab=100.00 E-value=0 Score=947.39 Aligned_cols=675 Identities=22% Similarity=0.322 Sum_probs=551.8
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
++++||||+++||.|||||+|.|.|..+++.- .....+...+|+|.+..|||||+|||+.++++..++.+++++++|++
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~-~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPD-FSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHCEECCCC-CCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEE
T ss_conf 96407999886114567157877631313465-55542356313664245675485676132289985676724335552
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH-------HHHHHHHCC
Q ss_conf 1798755289999999860456999955888883479999999873997899981767658755-------556664111
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADF-------YRSVEMISS 158 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~-------~~~l~~i~~ 158 (701)
||||||||++|+.++|+++||+++||||+|||+.+|+++++++.++++|++++||||||++.|+ |..+..+.+
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 58875550688888865236379999822570520999999987426767999741678999816983889999878999
Q ss_pred CCC-------CCCCEECCCCCCC----CCCCEEEEEHHHHH-----------------HCCCCCCCCCCCEEEEECHHHH
Q ss_conf 102-------6833000234555----66530244223443-----------------1145222698513874004317
Q gi|254780264|r 159 RLG-------ANPLVIQLPVGSE----SNFQGVIDLVEMKA-----------------LLWKNEDLGSSWDVVEIPEDMK 210 (701)
Q Consensus 159 ~l~-------~~~~~~~~p~~~~----~~~~g~id~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 210 (701)
.+| ....++..|+-.+ +.-.||++.+..++ .+|++-||.++..++.......
T Consensus 283 ~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~ 362 (971)
T KOG0468 283 EINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG 362 (971)
T ss_pred HHCCHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86241221025666412644476344215544166657788888986088515441033310000046652001479887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHC--CCCCCHHHHHHHHCC--EEECCEEEECCCCCEECCCCHHHHHHH
Q ss_conf 8899999988630023457899-------98632--778998898730000--031010032343100012210248898
Q gi|254780264|r 211 DSANSYRDKMIESIVELDDSAM-------DSYLQ--GESFSSDRIRSLIRL--GTISVKFFPVLCGSSFKNKGVQPLLDA 279 (701)
Q Consensus 211 ~~~~~~~~~lle~i~~~dd~~~-------~~~l~--~~~~~~~~l~~~l~~--~~~~~~~~pv~~gsa~~~~Gv~~LLd~ 279 (701)
...++|.+|++||++++..... ...+. +..++.+.++-..+- ..++. -|||.. ..+.|+
T Consensus 363 ~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~----~ffg~~------sgfvd~ 432 (971)
T KOG0468 363 SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCK----SFFGIE------SGFVDM 432 (971)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH----HHCCCH------HHHHHH
T ss_conf 6640234556768999999985103320120466641024677762385179999999----861530------346575
Q ss_pred HHHHCCCHHHEECCCCCCCCCCCC------CCCCCCCCCCCCEECCCCCCCCCCCCE-EHHHHHCCCCCCCCEEEEECCC
Q ss_conf 987178621300012222456752------101123456542010332116546710-0001101334568368983265
Q gi|254780264|r 280 VVDYLPSPLDVRAIKGVDVKSNSE------IDVSAVDSSPLSMLAFKVMADSFVGSL-TFCRIYSGKISKGDSLLNTVKG 352 (701)
Q Consensus 280 i~~~lPsP~~~~~~~~~~~~~~~~------~~~~~~~~~pl~~~v~K~~~d~~~G~~-a~~RV~SGtL~~gd~i~~~~~~ 352 (701)
+++|+|||.+..+.+....+.+.. ....|++++||+++++|+....+.-.+ +|+||+||+++.|+.|...+.+
T Consensus 433 ~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgen 512 (971)
T KOG0468 433 PVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGEN 512 (971)
T ss_pred HHHHCCCHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEEECCEECCCCEEEEEEEEEEECCEEECCEEEEEECC
T ss_conf 57646882331112110030288752588999851777751687404120477503555424530406615523574013
Q ss_pred CC---------CEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC-CCCCC---CCCCCCCCCCC-CCCEEEEEEE
Q ss_conf 54---------11104532104744542003567326413874443211-01277---88410156636-6521357776
Q gi|254780264|r 353 KK---------ERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD-TLCDP---SRPIVLERMDF-PEPVIQIAIE 418 (701)
Q Consensus 353 ~~---------~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd-Tl~~~---~~~~~~~~~~~-~~Pvv~vaIe 418 (701)
.. ..|++++.+.++++.+|+.|+||+||.|.|+++...+. |+++. +...+|++++| +.|++++++|
T Consensus 513 y~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiave 592 (971)
T KOG0468 513 YSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVE 592 (971)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCEEEEECCCHHHHHHHHEECCCCCCCEEECCCHHCCCCCEEEEEEC
T ss_conf 66798551013341004566556788842468875899844656776554100136665304325432177642899834
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHC-CCCCEECCCCCCCCCCCCCCE--
Q ss_conf 15643220257888854102742014450457546876066478999999987411-133201054101101444210--
Q gi|254780264|r 419 PKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREF-KVDANVGAPYVSYRESVTKSC-- 495 (701)
Q Consensus 419 p~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f-~iei~vs~P~V~yrEti~~~~-- 495 (701)
|.||+++|||++||++.++.+|.+..++ ||+|||++.|.|||+|||+++|||..| .||+++++|.|.|+||+.+++
T Consensus 593 P~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssi 671 (971)
T KOG0468 593 PLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSI 671 (971)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEH-HHCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEECCCEEEEEEEEECCCCH
T ss_conf 6884662678899875311277178762-226745885276112788999999877650333238526888765225411
Q ss_pred --EEEEEEECC-----------------------CC---------------CCCCCEEEEEEECCCCCCCEEEECCEEE-
Q ss_conf --355432115-----------------------89---------------8753027899970288886479812002-
Q gi|254780264|r 496 --VHDYIHKKQ-----------------------SG---------------GAGQFAKVKIAFEPNPDGDDFVFESKIV- 534 (701)
Q Consensus 496 --~~~~~~~~~-----------------------~~---------------~~~~~~~v~~~~eP~~~g~~~~f~~~~~- 534 (701)
.++...||. .+ |.-..+.-.|+|+|+..|.|++..+.+.
T Consensus 672 kcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~ 751 (971)
T KOG0468 672 KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPT 751 (971)
T ss_pred HHHCCCCCCCCCEEEEECHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCHHHHHHCCEECCCCCCCCCCEEECCCCCC
T ss_conf 23204888667425550100000567865380773366666656651036601342043122378778973320576720
Q ss_pred --CCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHH--HHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf --67002433325677899999718822550331289999511168767603--37999999999999848988980178
Q gi|254780264|r 535 --GGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVL--AFEIAARACFREAASKMGVQLLEPLM 610 (701)
Q Consensus 535 --~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~--~~~~a~~~a~~~a~~~a~p~LlEPi~ 610 (701)
+.++...++++|.+||+|++++||||+||+++|+|+|.|+.......++| +..+++|++++.|++.|.|+||||+|
T Consensus 752 evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y 831 (971)
T KOG0468 752 EVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVY 831 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCEE
T ss_conf 11488888889999998888750487667732230689851104764201478700167888888878752535318558
Q ss_pred EEEEEECHHHHHHHHHHHHHCCEEEEEEE--CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHHH
Q ss_conf 99998385774579999972770797453--5898399999960437338478878630863798999629040885599
Q gi|254780264|r 611 KVEVTVPAEYVGDVIGDLSSRRGQIQGQE--NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVS 688 (701)
Q Consensus 611 ~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~--~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~~ 688 (701)
.+||++|.+++..||.+|++|||+|...- +++++..++|++||+|||||++|||..|||+|+|++.|+||++|||++.
T Consensus 832 ~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDpL 911 (971)
T KOG0468 832 LVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDPL 911 (971)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99974364238899999986257323348889984455046301322367520026630642578776563131799855
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780264|r 689 KEIQ 692 (701)
Q Consensus 689 ~~~~ 692 (701)
++-+
T Consensus 912 DKsi 915 (971)
T KOG0468 912 DKSI 915 (971)
T ss_pred CCCC
T ss_conf 6333
No 11
>KOG0467 consensus
Probab=100.00 E-value=0 Score=934.19 Aligned_cols=671 Identities=24% Similarity=0.382 Sum_probs=523.0
Q ss_pred CCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 56710252799986878897789999999808732142201795613780889870853764079999607778713899
Q gi|254780264|r 4 KCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLT 83 (701)
Q Consensus 4 ~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iN 83 (701)
+-+.++|||+|++||||||||||+|+|++.+|.|+. +..+.-||||++++||.||||||||+||+..+ +|+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~--rlagkirfld~redeq~rgitmkss~is~~~~-----~~~~n 75 (887)
T KOG0467 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISS--RLAGKIRFLDTREDEQTRGITMKSSAISLLHK-----DYLIN 75 (887)
T ss_pred CCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCEECH--HHCCCEEECCCCCHHHHHCEEEECCCCCCCCC-----CEEEE
T ss_conf 778775058999999648853257778750667415--33560662104625666162443131110137-----65899
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC-
Q ss_conf 9817987552899999998604569999558888834799999998739978999817676587555566641111026-
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGA- 162 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~- 162 (701)
|||||||+||++||++|+|+||||+++||++||||+||.+++|||+.+++++|||||||||++.+++....+.+.++..
T Consensus 76 lidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~ 155 (887)
T KOG0467 76 LIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRV 155 (887)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 85589864506553266650477189996002545538999999997167459997316667888716969999999999
Q ss_pred ----CCCEE--------------------------CCCCCCCCCCCEEEEEHHHHHH----------------CCCCCCC
Q ss_conf ----83300--------------------------0234555665302442234431----------------1452226
Q gi|254780264|r 163 ----NPLVI--------------------------QLPVGSESNFQGVIDLVEMKAL----------------LWKNEDL 196 (701)
Q Consensus 163 ----~~~~~--------------------------~~p~~~~~~~~g~id~~~~~~~----------------~~~~~~~ 196 (701)
|-++. ...+-+.....||.+.+.+++. +|++.+.
T Consensus 156 i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~ 235 (887)
T KOG0467 156 IEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYI 235 (887)
T ss_pred HHHHHHHHHHHHCCHHHCCCHHHHHHHCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEEE
T ss_conf 99866688876411111021032210100043677884899871015620199999999874473466521321045243
Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC---------CCCCCHHHHHHHHCCEEECCEEEECCCCC
Q ss_conf 985138740043178899999988630023457899986-32---------77899889873000003101003234310
Q gi|254780264|r 197 GSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSY-LQ---------GESFSSDRIRSLIRLGTISVKFFPVLCGS 266 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~-l~---------~~~~~~~~l~~~l~~~~~~~~~~pv~~gs 266 (701)
+.+.+.+..+...+.....|.++.+|++|..++..+..- .+ +..+.+-+++..+ ..++.+|.|+
T Consensus 236 ~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll--~~im~~wLPl---- 309 (887)
T KOG0467 236 DPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLL--DAIMSTWLPL---- 309 (887)
T ss_pred CCHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHCCC----
T ss_conf 3204666435676667776313330057899998743202888998764302121358999999--9999752632----
Q ss_pred EECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCC---------CCCCCCCCCCCCCCEECCCCCCCCCC----C-CEEH
Q ss_conf 00122102488989871786213000122224567---------52101123456542010332116546----7-1000
Q gi|254780264|r 267 SFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSN---------SEIDVSAVDSSPLSMLAFKVMADSFV----G-SLTF 332 (701)
Q Consensus 267 a~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~---------~~~~~~~~~~~pl~~~v~K~~~d~~~----G-~~a~ 332 (701)
.+..+-+++.++|+|.+.+..+...+... .+....+.+.+|..++|+|+...+.. . -++|
T Consensus 310 ------s~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ 383 (887)
T KOG0467 310 ------SDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAF 383 (887)
T ss_pred ------CCCHHHHHHHHCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCHHHCCHHHHEEE
T ss_conf ------10229999885597799998752501268411137276654113799884799997220462321723021156
Q ss_pred HHHHCCCCCCCCEEEEECC-------CCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110133456836898326-------554111045321047445420035673264138744432110127788410156
Q gi|254780264|r 333 CRIYSGKISKGDSLLNTVK-------GKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLER 405 (701)
Q Consensus 333 ~RV~SGtL~~gd~i~~~~~-------~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~~~~~~ 405 (701)
+||||||++.||.+|..+. -.+.+|.++|++||++.++.+++++||+|+|.|-+......|+|+.....++..
T Consensus 384 ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~ 463 (887)
T KOG0467 384 ARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLV 463 (887)
T ss_pred EEECCCCEEECCEEEECCCCCCCCCEEEEEEEHHHHHHHCCCCEEEECCCCCCEEEECCCCEEECCCEECCCCCCCCEEE
T ss_conf 35014844621176423789998540456540556775045522310247786798616644751541103688765045
Q ss_pred CCC-CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHC-CCCCEECCC
Q ss_conf 636-652135777615643220257888854102742014450457546876066478999999987411-133201054
Q gi|254780264|r 406 MDF-PEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREF-KVDANVGAP 483 (701)
Q Consensus 406 ~~~-~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f-~iei~vs~P 483 (701)
..| ..|.++++|+|.+|.|+++|.++|+.|.+.||++++..+ ++|||++.+.||+|||.|++||++ | ++++++|+|
T Consensus 464 ~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP 541 (887)
T KOG0467 464 VNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEP 541 (887)
T ss_pred EEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHHH-HHCEEEEECCC
T ss_conf 6664024789996318867768899887766056406678876-254103443017779989988765-53068872487
Q ss_pred CCCCCCCCCCCEEE--------------------------------EEEEE--------------------CCCCC----
Q ss_conf 10110144421035--------------------------------54321--------------------15898----
Q gi|254780264|r 484 YVSYRESVTKSCVH--------------------------------DYIHK--------------------KQSGG---- 507 (701)
Q Consensus 484 ~V~yrEti~~~~~~--------------------------------~~~~~--------------------~~~~~---- 507 (701)
.|+||||+.+.+.. +...+ ++.+.
T Consensus 542 ~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ 621 (887)
T KOG0467 542 LVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEEN 621 (887)
T ss_pred CCCHHHHCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 63156540453010023322732110301233677664046652221243321100110125444430111124530023
Q ss_pred -------------------CCCCEEEEEEECCCCCCCEEEECCEEECC--------EEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -------------------75302789997028888647981200267--------002433325677899999718822
Q gi|254780264|r 508 -------------------AGQFAKVKIAFEPNPDGDDFVFESKIVGG--------AIPKEYIPGVRKGIESMLSSGPLA 560 (701)
Q Consensus 508 -------------------~~~~~~v~~~~eP~~~g~~~~f~~~~~~~--------~~~~~~~~~v~~g~~~a~~~GpL~ 560 (701)
.+-+-.-.|+|+|...|+|+.|+..-... .+.+ +-+++..||+.++.+||||
T Consensus 622 ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc 700 (887)
T KOG0467 622 LSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLC 700 (887)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHH-HHHHHHHHHHHHHCCCCCC
T ss_conf 237999988764166277777887510011413358860132000312545405557878-9998766675665068632
Q ss_pred CCEEEEEEEEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf 550331289999511168767---60337999999999999848988980178999983857745799999727707974
Q gi|254780264|r 561 GFPMLGMKVTLLDGDYHDVDS---SVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQG 637 (701)
Q Consensus 561 ~epi~gv~v~l~d~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~ 637 (701)
.|||.|++|.+..+...+..+ -.|+..+|++.+|++|++...||||+|||.|+|++..+++|++|++|++|+|+|++
T Consensus 701 ~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLs 780 (887)
T KOG0467 701 NEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLS 780 (887)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEHHHHHHHHHHHHHHHCCHHHH
T ss_conf 46742079996405753222457757410899999999998627877766656434532387755678544220132101
Q ss_pred EE--CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHH-----HHHHHHHHH
Q ss_conf 53--589839999996043733847887863086379899962904088559-----999999973
Q gi|254780264|r 638 QE--NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHV-----SKEIQEKYS 696 (701)
Q Consensus 638 ~~--~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~-----~~~~~~~~~ 696 (701)
++ +++++|.|+|++||.|||||+++||..|||.|++|+.|+||+.++.|| .+|.+++.+
T Consensus 781 Eem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefG 846 (887)
T KOG0467 781 EEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFG 846 (887)
T ss_pred HHHHCCCCCEEEEEEEEEECCCCHHHHHHHCCCCCCCHHHHCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 566378875799997401215557999861056554633000341783378766887089998741
No 12
>KOG0464 consensus
Probab=100.00 E-value=0 Score=915.14 Aligned_cols=675 Identities=36% Similarity=0.580 Sum_probs=597.0
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
.++.+||||+|+||+|+||||.+|++||++|.|+.+|.|++|+|++||+.+||||||||+|+++.|.|+| |+|||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg-----~rinl 106 (753)
T KOG0464 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG-----HRINL 106 (753)
T ss_pred CCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCC-----CEEEE
T ss_conf 8366641130699851787406788997740221046567885377888888864836654044212356-----16765
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 81798755289999999860456999955888883479999999873997899981767658755556664111102683
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANP 164 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~ 164 (701)
|||||||||.-||+|.||+.|||+.|+|+..||++||.+||||+.+.++|.+.||||||++.+.|...+++|+++++..+
T Consensus 107 idtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464 107 IDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKA 186 (753)
T ss_pred ECCCCCCEEEEEHHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 24888403798789888775073899845677664122100030135784533023466655546668899998738741
Q ss_pred CEECCCCCCCCCC-CEEEEEHHHHHHCCCCCC-CCCCCEEEE----ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 3000234555665-302442234431145222-698513874----004317889999998863002345789998632-
Q gi|254780264|r 165 LVIQLPVGSESNF-QGVIDLVEMKALLWKNED-LGSSWDVVE----IPEDMKDSANSYRDKMIESIVELDDSAMDSYLQ- 237 (701)
Q Consensus 165 ~~~~~p~~~~~~~-~g~id~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~- 237 (701)
+.++.|++.+..| +|++|+.....++|..+. .|+.|...+ ...++.....+++..+.+.+++.|+.+.++||+
T Consensus 187 l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~lde 266 (753)
T KOG0464 187 LKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDE 266 (753)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 78970155324544027999887434577788754444578642348978999999999999998861127789999987
Q ss_pred ----CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----7789988987300000310100323431000122102488989871786213000122224567521011234565
Q gi|254780264|r 238 ----GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSP 313 (701)
Q Consensus 238 ----~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p 313 (701)
.+.++.++++..++..+...+..|++||||++|+|+++|||+|.-|||||.+++ |.+..-|. ..
T Consensus 267 f~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------dd 334 (753)
T KOG0464 267 FDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------DD 334 (753)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCHHHHHHHCCCCHHHCC-HHHHHHHH-----------HH
T ss_conf 5055334678999999999866632012220034403676512334432268835402-27776520-----------13
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 42010332116546710000110133456836898326554111045321047445420035673264138744432110
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDT 393 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdT 393 (701)
++++.||+.||..+|.++|+|||||+++.+..++|.+.+..+.+.+++++.+++..++++++||||....||+++.+|||
T Consensus 335 lcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdt 414 (753)
T KOG0464 335 LCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDT 414 (753)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCCHHHHHHHHHCCCCCEEEEECCEEECCCCE
T ss_conf 77776665300134862689986154467613662266533111765355415431021203464799950143125776
Q ss_pred CCCCC------------------------CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 12778------------------------841015663665213577761564322025788885410274201445045
Q gi|254780264|r 394 LCDPS------------------------RPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPN 449 (701)
Q Consensus 394 l~~~~------------------------~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~e 449 (701)
+..++ +...|.+++.|.|||++.|||.+-++++.+..+|+.|.++|||++++.|++
T Consensus 415 ivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~d 494 (753)
T KOG0464 415 IVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPD 494 (753)
T ss_pred EEECCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 88330548999998614523430587640002561355787368995258532321348999998732387616876688
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCC--CCCCCEEEEEEECCCCCC---
Q ss_conf 754687606647899999998741113320105410110144421035543211589--875302789997028888---
Q gi|254780264|r 450 SGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSG--GAGQFAKVKIAFEPNPDG--- 524 (701)
Q Consensus 450 tGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~--~~~~~~~v~~~~eP~~~g--- 524 (701)
|||+++.||||||+|.+.+|++++|++++-+++..|.|||++.++.....+.....+ .+..|.++..+.+|....
T Consensus 495 sgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~ 574 (753)
T KOG0464 495 SGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPF 574 (753)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCC
T ss_conf 88668850622329999999876407321110688999999999866666440243444563389998640454343651
Q ss_pred CEEEECCEEECCEE-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 64798120026700-24333256778999997188225503312899995111687676033799999999999984898
Q gi|254780264|r 525 DDFVFESKIVGGAI-PKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGV 603 (701)
Q Consensus 525 ~~~~f~~~~~~~~~-~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p 603 (701)
..+.|+..-.-... .+--+++|++|+..||.+|||+|.|+++|+++|+++..|...+++.-+..++.+|+.+|+.++.-
T Consensus 575 kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~ 654 (753)
T KOG0464 575 KKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADK 654 (753)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36776310114613446479999866778885698668850202576577786388578899999999999999866667
Q ss_pred EEEEEEEEEEEEECH-HHHHHHHHHHHHCCEEEEEEECC--CCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCE
Q ss_conf 898017899998385-77457999997277079745358--983999999604373384788786308637989996290
Q gi|254780264|r 604 QLLEPLMKVEVTVPA-EYVGDVIGDLSSRRGQIQGQENR--SVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHY 680 (701)
Q Consensus 604 ~LlEPi~~~eI~~p~-~~~g~v~~~L~~Rrg~i~~~~~~--~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~ 680 (701)
+|+||+|.++|.+.. +++..|.++|.+|||++.+.+.. +....|.|.+|++|+.||+..||.+|||.|.|.++|++|
T Consensus 655 ~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~y 734 (753)
T KOG0464 655 QLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGY 734 (753)
T ss_pred HHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHCCCCCCCCHHEEEEEEEHHHHHCHHHHHHHHHCCCCEEEEEECCH
T ss_conf 77554343289970489753789999986225011134343301314676457895157888998744661179986001
Q ss_pred EECCHHHHHHHHHHHH
Q ss_conf 4088559999999973
Q gi|254780264|r 681 APVPAHVSKEIQEKYS 696 (701)
Q Consensus 681 ~~vp~~~~~~~~~~~~ 696 (701)
|.+..+...+++++..
T Consensus 735 qamn~~dk~~il~kra 750 (753)
T KOG0464 735 QAMNEHDKMEILKKRA 750 (753)
T ss_pred HHCCHHHHHHHHHHHC
T ss_conf 3158577889987533
No 13
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=902.82 Aligned_cols=646 Identities=31% Similarity=0.482 Sum_probs=549.0
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
+..+.|||++|+||+|||||||.|.||+-+|.|++ +..+...++||+++|++|||||.++.+|+.+.+ .+++|+|||
T Consensus 14 ~~~~~irniGi~ahidhGkttlsdnllaGaGmis~--elaG~q~~ldfde~e~~rGiti~aanvsmvh~y-eG~~ylinl 90 (724)
T TIGR00490 14 YKPEFIRNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGEQLYLDFDEQEQERGITIDAANVSMVHEY-EGNEYLINL 90 (724)
T ss_pred HHHHHHHHEEEEEEECCCCCHHHHHHHHCCCHHHH--HHCCCCEEECCCHHHHHCCCEEEEEEEEEEEEE-CCCCEEEEE
T ss_conf 30122210003786317751122344421332345--405641000244135237726764115676531-475024333
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC--
Q ss_conf 817987552899999998604569999558888834799999998739978999817676587555566641111026--
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGA-- 162 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~-- 162 (701)
||||||+||.++|+||+|+.||+|+||+|+|||+|||++++||+++++++++|||||+||++.++....++++++|-.
T Consensus 91 idtPGhvdfGGdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pvlf~nkvdrli~el~l~~~~lq~r~~k~i 170 (724)
T TIGR00490 91 IDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPEELQERLIKII 170 (724)
T ss_pred ECCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 14886210562488887764763899950256576157899999873187067723478888862468889999999999
Q ss_pred ---CCCEEC-CCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ---833000-2345556653024422344311452226985138740043178899999988630023457899986327
Q gi|254780264|r 163 ---NPLVIQ-LPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQG 238 (701)
Q Consensus 163 ---~~~~~~-~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~ 238 (701)
|-+... .|-.+. .-|---.......|++.++.+..++ |-. +...-.|. .+++ |..
T Consensus 171 ~~~n~li~~m~P~~~~---~~W~~~v~~Gs~afGsa~~nWa~~v---P~~-~~~Gi~f~-~~~~------------~~~- 229 (724)
T TIGR00490 171 AEVNKLIKKMAPEEFK---DKWKVRVEDGSVAFGSAYYNWAISV---PIM-KKTGITFK-DIYK------------YIK- 229 (724)
T ss_pred HHHHHHHHHCCCCCHH---CCCEEEECCCCCHHHHHHHHHEEEC---CCC-CCCCCCHH-HHHH------------HHH-
T ss_conf 9999999741761000---0004765156410112221000204---430-01377599-9999------------863-
Q ss_pred CCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCC------CCCCCCCCC
Q ss_conf 78998898730000031010032343100012210248898987178621300012222456752------101123456
Q gi|254780264|r 239 ESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSE------IDVSAVDSS 312 (701)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~------~~~~~~~~~ 312 (701)
++...++.++ .|+ .+-+||++++|||||.++|.+|...+|.+.. ...+|+|+|
T Consensus 230 ----e~~~~ela~k-------~Pl----------~~v~l~mv~~hlPsP~e~q~~r~~~~W~Gd~~se~G~am~~~dP~G 288 (724)
T TIGR00490 230 ----EDKQKELAKK-------APL----------HQVVLDMVIKHLPSPAEAQKYRIPVIWKGDLNSEAGKAMLNCDPEG 288 (724)
T ss_pred ----CCHHHHHHHH-------CCH----------HHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCHHCCHHCCCCCCC
T ss_conf ----0114557640-------658----------8999999997448962244401001010465400054210048998
Q ss_pred CCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 54201033211654671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r 313 PLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD 392 (701)
Q Consensus 313 pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd 392 (701)
|+...+.++..+++.|.++.+|+|||++++|+.+|......+.+|+++..++|..+.++++++|||||++.|++++..|+
T Consensus 289 P~a~~~t~~~~~~~aG~~~~~r~y~G~i~~G~e~y~v~~~~k~~~q~v~~ymGP~r~~~d~~~aGni~a~~G~k~a~aG~ 368 (724)
T TIGR00490 289 PLAVMITKIVVDKHAGEVAVGRLYSGAIKKGSEVYLVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVVGLKEAVAGE 368 (724)
T ss_pred CEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCHHHCCEEEEEEEECCEECCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 61445565566036681677555315003686689864300021124667766702012422677568874032111453
Q ss_pred CCCCCCCC-CCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 01277884-1015663-665213577761564322025788885410274201445045754687606647899999998
Q gi|254780264|r 393 TLCDPSRP-IVLERMD-FPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRM 470 (701)
Q Consensus 393 Tl~~~~~~-~~~~~~~-~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L 470 (701)
|+|+.... .+|+.+. +++|++.++||++|+.|+|||.+.|+++.++||++++..++|||||+++||||||||+..++.
T Consensus 369 t~C~~~~~~~~fe~~~h~sePv~t~a~eakn~~dlPklievlr~~~~edPt~~~~~neetGehl~sGmGelh~e~~~~~~ 448 (724)
T TIGR00490 369 TICSTDKKIKPFEAIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVKVEINEETGEHLISGMGELHLEIIVKKI 448 (724)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHH
T ss_conf 00252123213343232047537999714675440589999997413497279997044451233122223345566566
Q ss_pred HHH-CCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC--------C-----------------
Q ss_conf 741-11332010541011014442103554321158987530278999702888--------8-----------------
Q gi|254780264|r 471 LRE-FKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPD--------G----------------- 524 (701)
Q Consensus 471 ~~~-f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~--------g----------------- 524 (701)
++. +++++.+|+|.|.||||+++.+.. ...|.++.++ +.++.+||++. |
T Consensus 449 ~~~~~~~~~~~~~Pivv~retv~G~~~~--ve~ksPnkhn---~~y~~~eP~~~~v~q~~~eG~~~~~~~~~k~~~~~~~ 523 (724)
T TIGR00490 449 REKDAGVEVETSEPIVVYRETVTGTSPV--VEGKSPNKHN---RFYIVVEPLEESVLQAFKEGKIKDVKVKKKLDDEIAK 523 (724)
T ss_pred HHHHCCCEEEECCCEEEEECCCCCCCCC--CCCCCCCCCC---EEEEEEECCHHHHHHHHHCCCCEEHHHHHHHHHHHHH
T ss_conf 4411230376448568971010476663--2577872215---4789980633799988635850001344456789999
Q ss_pred -------------------CEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHH-
Q ss_conf -------------------647981200267002433325677899999718822550331289999511168767603-
Q gi|254780264|r 525 -------------------DDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVL- 584 (701)
Q Consensus 525 -------------------~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~- 584 (701)
+++.|.+-+.|-.+..+..+.+.+||+.|+..||++.|++.|++++|.|+.+|++..++|
T Consensus 524 ~l~~aG~~~eea~~~~~~ye~n~~~~~t~Gi~~l~e~~el~~~Gf~~am~~GP~a~e~~~G~k~kl~d~~~heda~hrGP 603 (724)
T TIGR00490 524 ELIEAGLDKEEAKRVEEVYEGNLFINVTRGIQYLDEVKELILEGFKEAMRNGPVAKEKVMGVKVKLVDAKLHEDAVHRGP 603 (724)
T ss_pred HHHHCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECHHHHCCCC
T ss_conf 99872788678889998740531342245578899999999998999974288421033405899863110022312470
Q ss_pred -HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHH
Q ss_conf -3799999999999984898898017899998385774579999972770797453589839999996043733847887
Q gi|254780264|r 585 -AFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSL 663 (701)
Q Consensus 585 -~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~L 663 (701)
+..+|.|.+++.|++.|.|.||||+..+-|.+|.+++|.++..+++|||+|++++..++...|.+.+|+.|+|||+.++
T Consensus 604 aq~~Pa~r~~i~~a~~~a~P~lleP~q~~~i~~Pqd~mG~~~rei~~rrGqi~~m~~eGdm~~~~~~~Pv~emfGfaG~i 683 (724)
T TIGR00490 604 AQVIPAVRKGIFAAMLQAEPVLLEPIQKVFINVPQDFMGAATREIQNRRGQILEMKQEGDMVTIKAKVPVAEMFGFAGAI 683 (724)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCHHHHHCCCCCC
T ss_conf 25658889999998850585021321001341551455678876512575177640478579997247757740210010
Q ss_pred HHHHCCEEEEEEEECCEEECCHHHHHHHHHHHHHHCC
Q ss_conf 8630863798999629040885599999999732026
Q gi|254780264|r 664 RSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKS 700 (701)
Q Consensus 664 R~~T~G~a~~~~~F~~~~~vp~~~~~~~~~~~~~~~~ 700 (701)
|+.|+|++.|+.++.+|+.+|.+.+++++.+++.||.
T Consensus 684 r~at~G~~~Ws~e~aG~e~~P~~l~~~~~~~~r~rkG 720 (724)
T TIGR00490 684 RGATEGRCLWSTEFAGFEKVPRELQEELVKEVRKRKG 720 (724)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1235772466411011453259999999999985048
No 14
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=0 Score=829.16 Aligned_cols=456 Identities=27% Similarity=0.419 Sum_probs=390.0
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE----CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 671025279998687889778999999980873214220----1795613780889870853764079999607778713
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEV----HDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v----~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
-.++++||||||||+|||||||+|+||+++|+|+++|+| .++++.+||+++||+|||||.|+++++.|. ++
T Consensus 5 ~ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~-----~~ 79 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-----DC 79 (526)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEEC-----CE
T ss_conf 6876117799993789898999999997467524484663146788646788588997596486151778678-----98
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89998179875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
+|||||||||+||++||.++|+++|+||+||||++||++||+++|++|..+++|+++|||||||.++|+..++++|+++|
T Consensus 80 ~iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~l 159 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVL 159 (526)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999098946778999999987375999997775523336899999886399889999656767898789887788874
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26833000234555665302442234431145222698513874004317889999998863002345789998632778
Q gi|254780264|r 161 GANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 (701)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~ 240 (701)
+.++.|++||+|.+..|.|++|+..+++++|.....+.......+.+...... .+.+- +.+++.+.+...
T Consensus 160 g~~~~p~~~Pig~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~ee~e 229 (526)
T PRK00741 160 GIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPEL---DEALG-------EDLAEQLREELE 229 (526)
T ss_pred CCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHH---HHHHH-------HHHHHHHHHHHH
T ss_conf 78736888303678860378880138799803677884046605877877899---98753-------899997553577
Q ss_pred CCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99889873000003101003234310001221024889898717862130001222245675210112345654201033
Q gi|254780264|r 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFK 320 (701)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K 320 (701)
+..+...+..+..++.++++|||||||++|.|+++|||+|++++|||.+.+.... ... .++.|++++|||
T Consensus 230 l~~~~~~~~d~~~~~~G~l~PVf~GSA~~n~GV~~LLd~iv~~~PsP~~r~~~~~---------~v~-p~~~~fsa~VFK 299 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDER---------VVE-PTEEKFSGFVFK 299 (526)
T ss_pred HHHCCCCCCCHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---------CCC-CCCCCCCEEEEE
T ss_conf 7731555106899973980289962000365699999999997799877777765---------447-877774359999
Q ss_pred CCC--CC-CCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 211--65-467100001101334568368983265541110453210474454200356732641387444321101277
Q gi|254780264|r 321 VMA--DS-FVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDP 397 (701)
Q Consensus 321 ~~~--d~-~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~ 397 (701)
+.. || |+|+++|+|||||+|++|++|+|...++++|+++++.|+|+++++|++|.|||||++.++..+.+|||||+.
T Consensus 300 iqanmDP~h~griaf~RV~SG~l~~g~~v~n~r~gk~eri~~l~~~~g~~r~~V~ea~AGDIvgl~~~~~~~tGDTL~~~ 379 (526)
T PRK00741 300 IQANMDPKHRDRIAFMRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTEG 379 (526)
T ss_pred EEECCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEECCC
T ss_conf 98403754254379999751188579989852579536632677874435235138769989997166630037552068
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 88410156636652135777615643220257888854102742014450457546876066478999999987411133
Q gi|254780264|r 398 SRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVD 477 (701)
Q Consensus 398 ~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~ie 477 (701)
+ +..+++++++.|+++.+|+|+++.|.++|.+||.+|.++||. ++..+++|||++|+||||||||++++||+++||+|
T Consensus 380 ~-~l~~~~Ip~f~P~~~~~v~~~~~~~~kkl~~gL~~L~EEd~~-~v~~~~~t~e~il~gmGeLHlEVv~~RLk~eygVe 457 (526)
T PRK00741 380 E-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGAV-QVFRPLSNNDLILGAVGQLQFEVVAHRLKNEYNVE 457 (526)
T ss_pred C-CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCE
T ss_conf 8-521068899997557998879888899999999985547866-98873889988999716889999999998873972
Q ss_pred CEECCCCCCC
Q ss_conf 2010541011
Q gi|254780264|r 478 ANVGAPYVSY 487 (701)
Q Consensus 478 i~vs~P~V~y 487 (701)
+.+.+.....
T Consensus 458 v~~e~~~~~~ 467 (526)
T PRK00741 458 AIYEPVGVAT 467 (526)
T ss_pred EEECCCCEEE
T ss_conf 8971574379
No 15
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=0 Score=784.13 Aligned_cols=462 Identities=29% Similarity=0.483 Sum_probs=398.3
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 10252799986878897789999999808732142201795613780889870853764079999607778713899981
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlID 86 (701)
+|+|||||||||||||||||+|+||+++|.+++.+++. .++||++++||||||||+|+++++.|+ +|+|||||
T Consensus 2 ie~IRNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~--~~~mD~~~~ErERGITI~a~~~~~~~~-----~~~iNiID 74 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ--ERVMDSNDLEKERGITILAKNTAIKWN-----DYRINIVD 74 (607)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH--HHCCCCCHHHHHCCCEEEEEEEEEEEC-----CEEEEEEC
T ss_conf 75442489997568898899999999728986445411--201478688987597262304899608-----78997865
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC---CCC
Q ss_conf 79875528999999986045699995588888347999999987399789998176765875555666411110---268
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL---GAN 163 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l---~~~ 163 (701)
||||+||++||+|+|+++||||+||||++|+++||+.+|++|.+.++|+|+|||||||+.++++.+++++.+.| +..
T Consensus 75 TPGH~DF~gEVeR~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~ 154 (607)
T PRK10218 75 TPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99854301488978976684899997887862458999999998799759972166766553578999999887404985
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
...+.+|+...+...||... ..
T Consensus 155 deqld~Pi~~asa~~G~a~~----------------------------------------------------------~~ 176 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGL----------------------------------------------------------DH 176 (607)
T ss_pred HHHHCCHHHHHHHHCCEECC----------------------------------------------------------CH
T ss_conf 67744435565540650126----------------------------------------------------------82
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89873000003101003234310001221024889898717862130001222245675210112345654201033211
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA 323 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~ 323 (701)
+.. ..++.+|||+|++++|+|. .+.++||.|+||++.+
T Consensus 177 ~~~-----------------------~~dl~pLldaIv~~IPaP~-------------------~d~d~Plq~lV~~ldy 214 (607)
T PRK10218 177 EDM-----------------------AEDMTPLYQAIVDHVPAPD-------------------VDLDGPFQMQISQLDY 214 (607)
T ss_pred HHH-----------------------HHHCCHHHHHHHHHCCCCC-------------------CCCCCCCCCEECCCCC
T ss_conf 343-----------------------3313608899985487989-------------------9988884101011235
Q ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCCC---CCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 654671000011013345683689832655---41110453210474454200356732641387444321101277884
Q gi|254780264|r 324 DSFVGSLTFCRIYSGKISKGDSLLNTVKGK---KERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRP 400 (701)
Q Consensus 324 d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~---~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~ 400 (701)
|+|.|+++++|||||++++||+|++...+. ..+|+++|.++|.++++++++.|||||+|+|++++.+|||||++.++
T Consensus 215 D~YvGrI~igRV~sG~ik~Gd~V~~~~~~g~~~~~kV~kl~~~~gl~r~ev~~a~AGDIVAIaGl~d~~iGDTl~d~~~p 294 (607)
T PRK10218 215 NSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNV 294 (607)
T ss_pred CCCCCEEEEEEEECCEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCCCEECCCCCC
T ss_conf 67676489999965748589843663279638843467995115777400546524059999423357777652157765
Q ss_pred CCCCCCCCCCCEEEEEEEECC----CCC-----CHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 101566366521357776156----432-----20257888854102742014450457546876066478999999987
Q gi|254780264|r 401 IVLERMDFPEPVIQIAIEPKS----KGD-----QERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471 (701)
Q Consensus 401 ~~~~~~~~~~Pvv~vaIep~~----~~d-----~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~ 471 (701)
.+++.+++.+|++.+.+...+ ..+ .-++++.|.+..++|++|++.-+++++.+.++|+|||||+|++++||
T Consensus 295 ~~Lp~~~i~ePtvsm~f~vn~sPfaG~egk~~t~r~i~erL~ke~~~nvsl~vee~~~~~~f~v~grGeLHLeIliErmr 374 (607)
T PRK10218 295 EALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMR 374 (607)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 56766677899651576116877666445420389999999876530762688706888647970442878999999986
Q ss_pred HHCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHH
Q ss_conf 41113320105410110144421035543211589875302789997028888647981200267002433325677899
Q gi|254780264|r 472 REFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIE 551 (701)
Q Consensus 472 ~~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~ 551 (701)
++ |+|+.+|.|.|.|||. +
T Consensus 375 RE-G~El~vs~P~Viyre~--------------------------------d---------------------------- 393 (607)
T PRK10218 375 RE-GFELAVSRPKVIFREI--------------------------------D---------------------------- 393 (607)
T ss_pred HC-CCEEEECCCCEEEEEC--------------------------------C----------------------------
T ss_conf 45-8479973883689913--------------------------------8----------------------------
Q ss_pred HHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 99971882255033128999951116876760337999999999999848988980178999983857745799999727
Q gi|254780264|r 552 SMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSR 631 (701)
Q Consensus 552 ~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 631 (701)
| ..+||+..+.|.+|++|+|.|+..|++|
T Consensus 394 -----G----------------------------------------------~~~EP~e~~~I~vP~ey~G~Vme~l~~R 422 (607)
T PRK10218 394 -----G----------------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGER 422 (607)
T ss_pred -----C----------------------------------------------CCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf -----9----------------------------------------------4618707999972625549999998851
Q ss_pred CEEEEEEECC-CCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEEC-CHHH
Q ss_conf 7079745358-983999999604373384788786308637989996290408-8559
Q gi|254780264|r 632 RGQIQGQENR-SVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPV-PAHV 687 (701)
Q Consensus 632 rg~i~~~~~~-~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~v-p~~~ 687 (701)
||.+.+++.. .+.+.+++.+|.+.++||.++|++.|+|.|.++..|.+|++. +|+.
T Consensus 423 rG~~~~M~~~~~grv~L~f~iPsRgLiG~r~~~lt~TrG~g~~~~~f~~y~~~~~g~~ 480 (607)
T PRK10218 423 KGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred CCEEEEEEECCCCEEEEEEECCCHHHCCCHHHEEECCCCEEEEEECCCCCCCCCCCCC
T ss_conf 7799755898999799999776535438725404247741899860225677878875
No 16
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=0 Score=783.88 Aligned_cols=466 Identities=30% Similarity=0.494 Sum_probs=407.5
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
.+++||||||+||+|||||||+|+||..+|.+++. +.+.++||+++.||||||||||+++++.|+..++++|.+|||
T Consensus 3 ~~~~IRNf~IiAHIDhGKSTLaDrlL~~tg~i~~~---~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLI 79 (601)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSER---EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLI 79 (601)
T ss_pred CHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCC---CCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf 33204558999943788888999999970997744---323331454155765583697867999988489967999985
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 17987552899999998604569999558888834799999998739978999817676587555566641111026833
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPL 165 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~ 165 (701)
||||||||+.||+|+|++||||||||||++|||+||..+|++|...++++|.||||||++.+|++.+.+++.+.++.++
T Consensus 80 DTPGHVDF~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~igl~~- 158 (601)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA- 158 (601)
T ss_pred CCCCCCCCCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCH-
T ss_conf 4898566450455603340725999976878560069999999987996577786146888998999999998868964-
Q ss_pred EECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 00023455566530244223443114522269851387400431788999999886300234578999863277899889
Q gi|254780264|r 166 VIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDR 245 (701)
Q Consensus 166 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~ 245 (701)
++
T Consensus 159 ------------------------------------------------------------------------------~e 160 (601)
T PRK05433 159 ------------------------------------------------------------------------------SD 160 (601)
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------77
Q ss_pred HHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 87300000310100323431000122102488989871786213000122224567521011234565420103321165
Q gi|254780264|r 246 IRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADS 325 (701)
Q Consensus 246 l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~ 325 (701)
++..||.+|.|+++|||+|++++|+|. .++++||.|++|+.++|+
T Consensus 161 ----------------il~vSAKtG~GV~~lLdaIV~~iP~P~-------------------gd~~~PL~ALIFDS~yD~ 205 (601)
T PRK05433 161 ----------------AVLVSAKTGIGIEEVLEAIVERIPPPK-------------------GDPDAPLKALIFDSWYDP 205 (601)
T ss_pred ----------------HHHHHHHCCCCHHHHHHHHHHHCCCCC-------------------CCCCCCHHHHHHHCCCCC
T ss_conf ----------------777752338887999999997479999-------------------998734312012303046
Q ss_pred CCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEE----EECCCCCCCCCCCCCCCCCC-
Q ss_conf 4671000011013345683689832655411104532104744542003567326----41387444321101277884-
Q gi|254780264|r 326 FVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDII----ALAGLKETTTGDTLCDPSRP- 400 (701)
Q Consensus 326 ~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv----~I~Gl~~~~~gdTl~~~~~~- 400 (701)
|+|.++|+|||+|+|++||++++.+.+++.+|.++..+ ..+..+++++.||+|+ +|.++.++.+|||+++..++
T Consensus 206 YrGvV~~vRV~~G~lk~Gd~I~~~~t~~~~~v~evGi~-~p~~~~~~~L~aGeVGyiiagiK~~~d~~vGDTit~~~~~~ 284 (601)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVF-TPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (601)
T ss_pred CCCEEEEEEEECCEECCCCEEEEECCCCEEEEEEEECC-CCCCCCCCEECCCCEEEEEECCCCHHHCCCCCEEECCCCCC
T ss_conf 78807999940887725852564126971672024256-89852745013784479982454443233476055477777
Q ss_pred -CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEE-----CCHHHHHHHHHHHHHHC
Q ss_conf -101566366521357776156432202578888541027420144504575468760-----66478999999987411
Q gi|254780264|r 401 -IVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSG-----MGELHLEIIVDRMLREF 474 (701)
Q Consensus 401 -~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g-----~GElhLev~l~~L~~~f 474 (701)
.++++++.+.|+++.+++|.+.+|.++|.+||.+|.++||||.+ ++||++.+..| +|+||||++.+||+++|
T Consensus 285 ~~pLpGf~~~kP~Vfagi~P~~~~d~~~Lr~AL~KL~LnD~Sl~~--e~Ets~aLG~GfRcGFLGlLHmeIi~ERLeREf 362 (601)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTY--EPETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (601)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE--EECCCHHHCCCCHHCCCCHHHHHHHHHHHHHHC
T ss_conf 534677889998699723427700689999999988635775376--314544432762113430677999999999872
Q ss_pred CCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHH
Q ss_conf 13320105410110144421035543211589875302789997028888647981200267002433325677899999
Q gi|254780264|r 475 KVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESML 554 (701)
Q Consensus 475 ~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~ 554 (701)
++++.++.|.|+||-+... |..+...| |.
T Consensus 363 ~~~vI~TaPsV~Y~v~~~~------------------------------g~~~~v~n-------P~-------------- 391 (601)
T PRK05433 363 DLDLITTAPSVVYEVTLTD------------------------------GEVIEVDN-------PS-------------- 391 (601)
T ss_pred CCCEEEECCCEEEEEEECC------------------------------CCEEEEEC-------HH--------------
T ss_conf 9846842795689999779------------------------------97999968-------56--------------
Q ss_pred HHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEE
Q ss_conf 71882255033128999951116876760337999999999999848988980178999983857745799999727707
Q gi|254780264|r 555 SSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQ 634 (701)
Q Consensus 555 ~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~ 634 (701)
.+| +.+.. -.+.|||..++|.||++|+|.|+..+..|||.
T Consensus 392 ------~~P----------------d~~~i------------------~~i~EP~v~~~I~~P~ey~G~vm~Lc~~rRG~ 431 (601)
T PRK05433 392 ------KLP----------------DPGKI------------------EEIEEPIVKATIIVPQEYLGAVMELCQEKRGV 431 (601)
T ss_pred ------HCC----------------CCCCC------------------EEEECCEEEEEEECCHHHHHHHHHHHHHHHCE
T ss_conf ------568----------------86652------------------18985668999966389889999999985326
Q ss_pred EEEEECC-CCEEEEEEEEEHHHH-CCHHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 9745358-983999999604373-38478878630863798999629040
Q gi|254780264|r 635 IQGQENR-SVYVVIDAHVPLSCM-FKYVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 635 i~~~~~~-~~~~~i~a~iP~~e~-~gf~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
..+++.- ++...++..+|++|+ ++|-+.|+|.|+|.|++.++|.+|++
T Consensus 432 ~~~~~y~~~~rv~l~y~lPL~Eii~DFfDkLKS~s~GYAS~dYe~~~y~~ 481 (601)
T PRK05433 432 QIDMEYLGNTRVMLTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRE 481 (601)
T ss_pred EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 53141367875999995658999887878754116551576021034451
No 17
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=774.71 Aligned_cols=465 Identities=30% Similarity=0.474 Sum_probs=406.7
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEEC-CCCCCCEEEEEEE
Q ss_conf 025279998687889778999999980873214220179561378088987085376407999960-7778713899981
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWP-GRDGGQKKLTIID 86 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~-~~~~~~~~iNlID 86 (701)
.||||||||||+|||||||+||||-.||.++. -+....+||+|+.|||||||||+.++.|.|+ ..+|..|.+||||
T Consensus 1 ~~IRNFsIIAHIDHGKSTLADRlle~T~~~s~---R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLID 77 (598)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEKTGAVSE---REMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLID 77 (598)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCC---HHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEEC
T ss_conf 98752678846248932488999986174562---025430577510000058201156347533753388788996452
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 79875528999999986045699995588888347999999987399789998176765875555666411110268330
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLV 166 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~ 166 (701)
|||||||+.||+|||.+|+||||||||+.||++||-.-+..|+.++|.+|.||||||-|-||.+.+-++|.+-+|.+..-
T Consensus 78 TPGHVDFsYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~~ 157 (598)
T TIGR01393 78 TPGHVDFSYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASE 157 (598)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 88972127378888887164035614103235888999988756187584778253688888589999876541889643
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
T Consensus 158 -------------------------------------------------------------------------------- 157 (598)
T TIGR01393 158 -------------------------------------------------------------------------------- 157 (598)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCC-CCCCEECCCCCCCC
Q ss_conf 73000003101003234310001221024889898717862130001222245675210112345-65420103321165
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDS-SPLSMLAFKVMADS 325 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~v~K~~~d~ 325 (701)
...-||.+|.||+.||++|++..|+|. .+++ +||-|+||..++|+
T Consensus 158 ---------------ai~~SAKtG~Gi~e~LEaIv~~vPpP~-------------------Gd~~DapLkALIFDS~YD~ 203 (598)
T TIGR01393 158 ---------------AILASAKTGIGIEEILEAIVKRVPPPK-------------------GDPDDAPLKALIFDSHYDN 203 (598)
T ss_pred ---------------CEEEEECCCCCHHHHHHHHHHCCCCCC-------------------CCCCCCCCEEEEEEEEECC
T ss_conf ---------------038750367888999889710181001-------------------1388866322788435438
Q ss_pred CCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE-CC---CCCCCCCCCCCCCCCC-
Q ss_conf 467100001101334568368983265541110453210474454200356732641-38---7444321101277884-
Q gi|254780264|r 326 FVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL-AG---LKETTTGDTLCDPSRP- 400 (701)
Q Consensus 326 ~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I-~G---l~~~~~gdTl~~~~~~- 400 (701)
|+|-++|+|||.|++++||++...++|+++.|.++..+.=......+++.||+++.| +| +.++..||||++..+|
T Consensus 204 YrGVv~~vRv~~G~ik~gD~I~~Mstgk~y~V~evG~~~P~~~~~~~~L~aGeVGy~~AgIK~v~D~~VGDTiT~~~~Pa 283 (598)
T TIGR01393 204 YRGVVVLVRVFEGTIKKGDKIRFMSTGKEYEVDEVGVFTPKLEVKTQELSAGEVGYIIAGIKDVSDVKVGDTITSVKNPA 283 (598)
T ss_pred CCEEEEEEEEEECEECCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCEECCCEEEEEEEEEECCCEECCCEEECCCCCC
T ss_conf 65089999995268646988999534876667550034345201466200163059998653104112054452567873
Q ss_pred -CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEE-----CCHHHHHHHHHHHHHHC
Q ss_conf -101566366521357776156432202578888541027420144504575468760-----66478999999987411
Q gi|254780264|r 401 -IVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSG-----MGELHLEIIVDRMLREF 474 (701)
Q Consensus 401 -~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g-----~GElhLev~l~~L~~~f 474 (701)
.++++.+-.+|||+..+.|.+.+|++.|.+||.||+.+|.||.++ +||-+-+-.| +|-|||||+++||.|||
T Consensus 284 ~eplpGF~~~KP~VFaGlYPid~~~Ye~LrdALeKL~LNDAsL~yE--~E~S~ALGFGFRCGFLGLLHmEiiqERLeREF 361 (598)
T TIGR01393 284 KEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREF 361 (598)
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHC
T ss_conf 7678886125765860125888034689999975554402542102--23630037404332666336899987654430
Q ss_pred CCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHH
Q ss_conf 13320105410110144421035543211589875302789997028888647981200267002433325677899999
Q gi|254780264|r 475 KVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESML 554 (701)
Q Consensus 475 ~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~ 554 (701)
++++-++.|.|.||=.-+ +|.-+...| |.
T Consensus 362 nldlI~TAP~V~Y~V~~~------------------------------~G~~~~v~n-------P~-------------- 390 (598)
T TIGR01393 362 NLDLITTAPSVVYKVYLT------------------------------DGEVIEVDN-------PS-------------- 390 (598)
T ss_pred CCEEEEECCCEEEEEEEE------------------------------CCCEEEEEC-------CH--------------
T ss_conf 870687278159999970------------------------------781899718-------30--------------
Q ss_pred HHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEE
Q ss_conf 71882255033128999951116876760337999999999999848988980178999983857745799999727707
Q gi|254780264|r 555 SSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQ 634 (701)
Q Consensus 555 ~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~ 634 (701)
.+|=.+- . -.+.||+.++.|.+|+||+|.||++|+.|||.
T Consensus 391 ------~~P~~~~----------------I------------------~~v~EPyv~~~IitP~ey~G~iM~LC~~KRG~ 430 (598)
T TIGR01393 391 ------DLPDPNK----------------I------------------EHVEEPYVKATIITPSEYLGAIMELCQEKRGV 430 (598)
T ss_pred ------HCCCCCC----------------C------------------CEEECCEEEEEEECCCCHHHHHHHHHHHCCEE
T ss_conf ------0685015----------------7------------------77844749999435830124688876301514
Q ss_pred EEEEECCC-CEEEEEEEEEHHHH-CCHHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 97453589-83999999604373-38478878630863798999629040
Q gi|254780264|r 635 IQGQENRS-VYVVIDAHVPLSCM-FKYVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 635 i~~~~~~~-~~~~i~a~iP~~e~-~gf~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
..+++.-+ ..+.|...+|++|. ++|-+.|+|.|.|.|+|-++|-+|++
T Consensus 431 ~~~~~Y~d~~RV~L~YemPL~EI~~DFfDkLKS~skGYASfDYE~~~yr~ 480 (598)
T TIGR01393 431 QTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISKGYASFDYELIGYRE 480 (598)
T ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 63436318955999997575306330106320222353211232135743
No 18
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=0 Score=777.02 Aligned_cols=469 Identities=31% Similarity=0.519 Sum_probs=410.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCC-CCCC-CCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 52799986878897789999999808-7321-422017956137808898708537640799996077787138999817
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAG-KSHK-IGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g-~i~~-~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
|||||||||||||||||+|.||.+|| ..+. ...+.+ |.||+.++||||||||-|.++++.|++.+| .++||+|||
T Consensus 1 iRNIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~E--R~MDSNDLErERGITILaKNTav~y~g~dG-~~~INIvDT 77 (609)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAE--RVMDSNDLERERGITILAKNTAVRYNGKDG-VTKINIVDT 77 (609)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE--EEECCCCCCHHCCCCCCCEEEEEEECCCCC-EEEEEEEEC
T ss_conf 97189998806994368988888765886415883213--540676521001552013003662528897-189977816
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC---CCCC
Q ss_conf 9875528999999986045699995588888347999999987399789998176765875555666411110---2683
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL---GANP 164 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l---~~~~ 164 (701)
|||.||.|||+|.|..+|||||||||.||.+|||+.||+.|++.+||+|+|||||||+.+++.++++++-+.| +++.
T Consensus 78 PGHADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~d 157 (609)
T TIGR01394 78 PGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADD 157 (609)
T ss_pred CCCCCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89887886588733024058999857888988534789999956893699971347887883788757878888538880
Q ss_pred CEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 30002345556653024422344311452226985138740043178899999988630023457899986327789988
Q gi|254780264|r 165 LVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSD 244 (701)
Q Consensus 165 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~ 244 (701)
-++-.|+-..+...||..+.. +++ +..
T Consensus 158 eQLDFP~vYASa~~G~A~l~~--------------------~~d-----------------------------g~~---- 184 (609)
T TIGR01394 158 EQLDFPIVYASARAGWASLDK--------------------DKD-----------------------------GLD---- 184 (609)
T ss_pred CCCCHHHHHHHHCCCCCCCCC--------------------CCC-----------------------------CCC----
T ss_conf 010125676652367201446--------------------657-----------------------------788----
Q ss_pred HHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 98730000031010032343100012210248898987178621300012222456752101123456542010332116
Q gi|254780264|r 245 RIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMAD 324 (701)
Q Consensus 245 ~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d 324 (701)
-.+..+.||+|+|++|.|.| ..+.++||.|+|+.+.+|
T Consensus 185 -----------------------~~~~~m~PLFd~I~~hvPaP-------------------~~~~d~PlQmlvt~ldy~ 222 (609)
T TIGR01394 185 -----------------------DDSEDMAPLFDAILRHVPAP-------------------KGDLDEPLQMLVTNLDYD 222 (609)
T ss_pred -----------------------CCHHHHHHHHHHHHHCCCCC-------------------CCCCCCCHHHEEEECCCC
T ss_conf -----------------------72201789998986406888-------------------988876242100011014
Q ss_pred CCCCCEEHHHHHCCCCCCCCEEEEECCC-C---CCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 5467100001101334568368983265-5---41110453210474454200356732641387444321101277884
Q gi|254780264|r 325 SFVGSLTFCRIYSGKISKGDSLLNTVKG-K---KERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRP 400 (701)
Q Consensus 325 ~~~G~~a~~RV~SGtL~~gd~i~~~~~~-~---~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~ 400 (701)
+|.||++++||++|+||+||+|...... . +.||++|+.+.|-+|.++++|.|||||||+|++++.+|+|||+.+++
T Consensus 223 ~y~GRI~~GRv~~G~vk~Gq~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~~~~IGeTiad~~~~ 302 (609)
T TIGR01394 223 EYLGRIAIGRVHRGTVKKGQQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEAP 302 (609)
T ss_pred CCCCEEEEEEEEECEECCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCEECCCCCC
T ss_conf 67766999987505654686479872469689777764542015711000455798778999077988735211333346
Q ss_pred CCCCCCCCCCCEEEEEEEE----CCCCC-CHH-----HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 1015663665213577761----56432-202-----5788885410274201445045754687606647899999998
Q gi|254780264|r 401 IVLERMDFPEPVIQIAIEP----KSKGD-QER-----MSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRM 470 (701)
Q Consensus 401 ~~~~~~~~~~Pvv~vaIep----~~~~d-~~k-----L~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L 470 (701)
.+|+.++.-+|.+++.+.. ..-++ -++ +.+-|.+=...+-+|+|.--++-..+.++|.|||||=|+++.+
T Consensus 303 ~ALP~~~vDEPT~sMtF~vN~SPlAG~EVGk~VTSR~i~dRL~rEL~~NvALrVe~t~~~D~f~VsGRGELhLsILiEtM 382 (609)
T TIGR01394 303 EALPLITVDEPTLSMTFSVNDSPLAGKEVGKFVTSRQIRDRLERELETNVALRVEDTESADKFEVSGRGELHLSILIETM 382 (609)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCEEEHHHHHHHCC
T ss_conf 78871125888128998752887655325730324415789999863171456403898873487201113023454203
Q ss_pred HHHCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHH
Q ss_conf 74111332010541011014442103554321158987530278999702888864798120026700243332567789
Q gi|254780264|r 471 LREFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGI 550 (701)
Q Consensus 471 ~~~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~ 550 (701)
|+| |.|+.||+|.|.||| +-+
T Consensus 383 RRE-GfEl~Vg~P~Vi~k~-~dG--------------------------------------------------------- 403 (609)
T TIGR01394 383 RRE-GFELQVGRPQVIYKE-IDG--------------------------------------------------------- 403 (609)
T ss_pred CCC-CEEEEECCCEEEEEE-ECC---------------------------------------------------------
T ss_conf 444-414753597789984-588---------------------------------------------------------
Q ss_pred HHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99997188225503312899995111687676033799999999999984898898017899998385774579999972
Q gi|254780264|r 551 ESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSS 630 (701)
Q Consensus 551 ~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~ 630 (701)
..+|||-++.|.||+|++|.|+..|++
T Consensus 404 -----------------------------------------------------~k~EP~E~~~IDVPEe~~G~V~e~Lg~ 430 (609)
T TIGR01394 404 -----------------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGK 430 (609)
T ss_pred -----------------------------------------------------EEECCEEEEEEECCCCCCCHHHHHHCC
T ss_conf -----------------------------------------------------531875699980285335466653147
Q ss_pred CCEEEEEEECC-C-CEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC-HHHH
Q ss_conf 77079745358-9-839999996043733847887863086379899962904088-5599
Q gi|254780264|r 631 RRGQIQGQENR-S-VYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP-AHVS 688 (701)
Q Consensus 631 Rrg~i~~~~~~-~-~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp-~~~~ 688 (701)
|||...+|++. + +++++...+|.+-++||.++.-+.|+|.|++...|++|+|.- |++.
T Consensus 431 RKgEm~~M~~~g~EG~tRl~F~~PsRGLIGfr~~FlT~TrG~Gimn~~F~~Y~P~~pG~i~ 491 (609)
T TIGR01394 431 RKGEMKDMEPSGNEGRTRLEFVIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKPGEIE 491 (609)
T ss_pred CCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8347772567699646999998166400122024544102131120121025788876877
No 19
>KOG0462 consensus
Probab=100.00 E-value=0 Score=654.27 Aligned_cols=468 Identities=31% Similarity=0.487 Sum_probs=393.8
Q ss_pred CCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 56710252799986878897789999999808732142201795613780889870853764079999607778713899
Q gi|254780264|r 4 KCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLT 83 (701)
Q Consensus 4 ~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iN 83 (701)
..|.||||||+||||||||||||+|+||..+|.|... ....++||.++.|||||||||+...|+.|.+ +++|++|
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~---~~q~q~LDkl~vERERGITIkaQtasify~~--~~~ylLN 128 (650)
T KOG0462 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN---IGQEQVLDKLQVERERGITIKAQTASIFYKD--GQSYLLN 128 (650)
T ss_pred CCCHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEC--CCCEEEE
T ss_conf 3906631313799984277016899999982877888---7556642454456652847875123799975--8732887
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98179875528999999986045699995588888347999999987399789998176765875555666411110268
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
|||||||+||++||+|+|.+||||||||||.+|+|+||...+..|++.++.+|.||||||++.+|.+.+..++.+.|..+
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred EECCCCCCCCCCEEHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 50589855554100012653571599997676812889999999998597488865315789889899999999986689
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
+
T Consensus 209 ~------------------------------------------------------------------------------- 209 (650)
T KOG0462 209 P------------------------------------------------------------------------------- 209 (650)
T ss_pred C-------------------------------------------------------------------------------
T ss_conf 6-------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89873000003101003234310001221024889898717862130001222245675210112345654201033211
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA 323 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~ 323 (701)
-+++..||.++.++.+||++|++.+|+|. ...++||.|++|..+.
T Consensus 210 ----------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~-------------------~~~d~plr~Lifds~y 254 (650)
T KOG0462 210 ----------------AEVIYVSAKTGLNVEELLEAIIRRVPPPK-------------------GIRDAPLRMLIFDSEY 254 (650)
T ss_pred ----------------CCEEEEEECCCCCHHHHHHHHHHHCCCCC-------------------CCCCCCHHHHHHHHHH
T ss_conf ----------------12488870257568889999996379998-------------------8888516777666335
Q ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHH--HCCCEEEEEECCCCCEEEECC-CCCCCCCCCCCCCC--
Q ss_conf 6546710000110133456836898326554111045321--047445420035673264138-74443211012778--
Q gi|254780264|r 324 DSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQM--HSNSREDIDEAYCGDIIALAG-LKETTTGDTLCDPS-- 398 (701)
Q Consensus 324 d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~--~g~~~~~v~~a~aGdIv~I~G-l~~~~~gdTl~~~~-- 398 (701)
|.|+|.++++||.+|.+++||+|....++++..+..+-+| ......++....+|.||+-.+ ++++.+|||++...
T Consensus 255 D~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462 255 DEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred HHHCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCC
T ss_conf 44253589999863446218788886137606767757763576143232145425367504466545002300000357
Q ss_pred CC-CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCE----EEEEECCHHHHHHHHHHHHHH
Q ss_conf 84-1015663665213577761564322025788885410274201445045754----687606647899999998741
Q gi|254780264|r 399 RP-IVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQ----TNLSGMGELHLEIIVDRMLRE 473 (701)
Q Consensus 399 ~~-~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE----~il~g~GElhLev~l~~L~~~ 473 (701)
.+ ..++..+.+.|++++...|.+.+|...|..++.+|..+|+++.+..+ .+++ +.+++.|+|||++.++||+++
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~E 413 (650)
T KOG0462 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLERE 413 (650)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCEEEECCCEEEHHHHHHHHHHH
T ss_conf 64675788888762488536667620555577799987515501145524-77300364586031212389999878886
Q ss_pred CCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHH
Q ss_conf 11332010541011014442103554321158987530278999702888864798120026700243332567789999
Q gi|254780264|r 474 FKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESM 553 (701)
Q Consensus 474 f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a 553 (701)
||.++-+++|.|+||--.... +.....| |.
T Consensus 414 yg~elivt~PtV~Yr~~~~~~------------------------------~~~~i~n-------p~------------- 443 (650)
T KOG0462 414 YGAELIVTPPTVPYRVVYSNG------------------------------DEILISN-------PA------------- 443 (650)
T ss_pred CCCEEEECCCCCEEEEEECCC------------------------------CEEEECC-------HH-------------
T ss_conf 195366438963279984588------------------------------6255228-------53-------------
Q ss_pred HHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCE
Q ss_conf 97188225503312899995111687676033799999999999984898898017899998385774579999972770
Q gi|254780264|r 554 LSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRG 633 (701)
Q Consensus 554 ~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg 633 (701)
.+|= .+... ..+||+...+|.+|+||+|.|+..++.|||
T Consensus 444 -------~fp~---------------~~~v~-------------------~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRg 482 (650)
T KOG0462 444 -------LFPD---------------PSDVK-------------------EFLEPYVEATIITPDEYVGAVIELCSERRG 482 (650)
T ss_pred -------HCCC---------------CCCCH-------------------HHCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf -------3898---------------22330-------------------111755799997768988999999987221
Q ss_pred EEEEEECC-CCEEEEEEEEEHHHHCC-HHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 79745358-98399999960437338-478878630863798999629040
Q gi|254780264|r 634 QIQGQENR-SVYVVIDAHVPLSCMFK-YVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 634 ~i~~~~~~-~~~~~i~a~iP~~e~~g-f~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
...++..- ++.+.++.++|++|+.| |-+.|.+.|+|.|+|.++|++|++
T Consensus 483 eq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~ 533 (650)
T KOG0462 483 EQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQA 533 (650)
T ss_pred HEECCEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 000324415876999995676888999998874036550577621356654
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=630.60 Aligned_cols=462 Identities=31% Similarity=0.529 Sum_probs=398.7
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 10252799986878897789999999808732142201795613780889870853764079999607778713899981
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlID 86 (701)
.++|||||||||||||||||+|.||..+|..+..+++. .|.||+.++|+||||||-+.+.+..|+ +++||++|
T Consensus 2 ~~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~-----~~~INIvD 74 (603)
T COG1217 2 MEDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYN-----GTRINIVD 74 (603)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHH--HHHCCCCCHHHHCCCEEEECCCEEECC-----CEEEEEEC
T ss_conf 76653068999844881028999987316544565201--440376423443493898515246208-----83898765
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC---CCC
Q ss_conf 79875528999999986045699995588888347999999987399789998176765875555666411110---268
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL---GAN 163 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l---~~~ 163 (701)
||||.||.+||+|.|..+||++|+|||.||.+|||+.|++.|++.++++|+|||||||+.++...+++++.+.| +++
T Consensus 75 TPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 75 TPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred CCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 89867766254511432334899997555888731444899997499848999677899988789999999999981997
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
.-.+-.|+-..+...|+..+ + +++
T Consensus 155 deQLdFPivYAS~~~G~a~~-----------------~----~~~----------------------------------- 178 (603)
T COG1217 155 DEQLDFPIVYASARNGTASL-----------------D----PED----------------------------------- 178 (603)
T ss_pred HHHCCCEEEEEECCCCEECC-----------------C----CCC-----------------------------------
T ss_conf 45578707985414751015-----------------8----655-----------------------------------
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89873000003101003234310001221024889898717862130001222245675210112345654201033211
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA 323 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~ 323 (701)
....+++|+++|++|.|.|. .+.++||.+.|+.+.+
T Consensus 179 -------------------------~~~~m~pLfe~I~~hvp~P~-------------------~~~d~PlQ~qvt~Ldy 214 (603)
T COG1217 179 -------------------------EADDMAPLFETILDHVPAPK-------------------GDLDEPLQMQVTQLDY 214 (603)
T ss_pred -------------------------CCCCHHHHHHHHHHHCCCCC-------------------CCCCCCEEEEEEEECC
T ss_conf -------------------------55531689999997589998-------------------9998880789985224
Q ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCC---CCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 65467100001101334568368983265---541110453210474454200356732641387444321101277884
Q gi|254780264|r 324 DSFVGSLTFCRIYSGKISKGDSLLNTVKG---KKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRP 400 (701)
Q Consensus 324 d~~~G~~a~~RV~SGtL~~gd~i~~~~~~---~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~~~~ 400 (701)
++|.|++.++||++|++++||++.....+ +..||++++-+.|-++.++++|.|||||||+|++++..|||+|++.++
T Consensus 215 n~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kll~f~GL~R~ei~eA~AGDIvaiaG~~~~~igdTi~d~~~~ 294 (603)
T COG1217 215 NSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNP 294 (603)
T ss_pred CCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEECCCEEEEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 45452268999852725489768998479947755776665505423335001255678998276435543413587776
Q ss_pred CCCCCCCCCCCEEEEEEEECC----CCCCH-----HHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 101566366521357776156----43220-----257888854102742014450457546876066478999999987
Q gi|254780264|r 401 IVLERMDFPEPVIQIAIEPKS----KGDQE-----RMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471 (701)
Q Consensus 401 ~~~~~~~~~~Pvv~vaIep~~----~~d~~-----kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~ 471 (701)
.+++.++..+|.+.+.+-..+ ..+-+ ++.+.|.+-...+-+|+|+--++-..+.++|.|||||-++++.+|
T Consensus 295 ~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MR 374 (603)
T COG1217 295 EALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMR 374 (603)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEECCCEEEHHHHHHHHH
T ss_conf 67887336898468999956887777678565589999999987641635998736999737980564445788888764
Q ss_pred HHCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHH
Q ss_conf 41113320105410110144421035543211589875302789997028888647981200267002433325677899
Q gi|254780264|r 472 REFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIE 551 (701)
Q Consensus 472 ~~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~ 551 (701)
++ |.|+.||.|.|.||| +-+
T Consensus 375 RE-GfEl~VsrP~Vi~ke-idG---------------------------------------------------------- 394 (603)
T COG1217 375 RE-GFELQVSRPEVIIKE-IDG---------------------------------------------------------- 394 (603)
T ss_pred HC-CEEEEECCCEEEEEE-CCC----------------------------------------------------------
T ss_conf 23-417772586599992-388----------------------------------------------------------
Q ss_pred HHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 99971882255033128999951116876760337999999999999848988980178999983857745799999727
Q gi|254780264|r 552 SMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSR 631 (701)
Q Consensus 552 ~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 631 (701)
.++||+-.+.|.||+++.|.|+..|..|
T Consensus 395 ----------------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie~lg~R 422 (603)
T COG1217 395 ----------------------------------------------------VKCEPFEEVTIDVPEEHQGAVIEKLGER 422 (603)
T ss_pred ----------------------------------------------------CCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf ----------------------------------------------------4668501378637423201899987653
Q ss_pred CEEEEEEEC-CCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECCHHH
Q ss_conf 707974535-89839999996043733847887863086379899962904088559
Q gi|254780264|r 632 RGQIQGQEN-RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHV 687 (701)
Q Consensus 632 rg~i~~~~~-~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp~~~ 687 (701)
+|...++.+ +.+++.+...+|.+-++||.++..++|+|.|.+...|+||+|..|++
T Consensus 423 Kgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 423 KGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCEECCCHHEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 576751535899859999972476501021110221456434321101345555654
No 21
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=628.33 Aligned_cols=468 Identities=30% Similarity=0.483 Sum_probs=403.6
Q ss_pred CCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf 56710252799986878897789999999808732142201795613780889870853764079999607778713899
Q gi|254780264|r 4 KCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLT 83 (701)
Q Consensus 4 ~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iN 83 (701)
.++.++|||||||||+||||+||+|+||-.+|.++. -+....++|+|+.|||||||||+.++++.|+..++++|.+|
T Consensus 3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~---Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~ln 79 (603)
T COG0481 3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE---REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLN 79 (603)
T ss_pred CCCHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEE
T ss_conf 672544232279998427820488999998467676---78888752213467662845873278999994799779999
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98179875528999999986045699995588888347999999987399789998176765875555666411110268
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
||||||||||+.||+|+|.+|+||+|||||..||++||..-...|..+++.+|.||||||.+.+|.+.+.++|.+.+|.+
T Consensus 80 lIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid 159 (603)
T COG0481 80 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGID 159 (603)
T ss_pred ECCCCCCCCEEEEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 72799844367776133763777189998765537889999999987696799753225688789789999999870989
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
+.-
T Consensus 160 ~~d----------------------------------------------------------------------------- 162 (603)
T COG0481 160 ASD----------------------------------------------------------------------------- 162 (603)
T ss_pred CCC-----------------------------------------------------------------------------
T ss_conf 520-----------------------------------------------------------------------------
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89873000003101003234310001221024889898717862130001222245675210112345654201033211
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA 323 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~ 323 (701)
...-||.++.|++.+|++|++.+|.|. .++++||-|++|..+.
T Consensus 163 ------------------av~~SAKtG~gI~~iLe~Iv~~iP~P~-------------------g~~~~pLkALifDS~y 205 (603)
T COG0481 163 ------------------AVLVSAKTGIGIEDVLEAIVEKIPPPK-------------------GDPDAPLKALIFDSWY 205 (603)
T ss_pred ------------------CEEEECCCCCCHHHHHHHHHHHCCCCC-------------------CCCCCCCEEEEEECCC
T ss_conf ------------------046763468997999999996289898-------------------9998751588884123
Q ss_pred CCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE----CCCCCCCCCCCCCCCCC
Q ss_conf 65467100001101334568368983265541110453210474454200356732641----38744432110127788
Q gi|254780264|r 324 DSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL----AGLKETTTGDTLCDPSR 399 (701)
Q Consensus 324 d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I----~Gl~~~~~gdTl~~~~~ 399 (701)
|+|+|.++++||+.|++++||++...+.+++..|.++..+.- ...+++++.||+++.+ ..+.++..|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred CCCCEEEEEEEEEECEECCCCEEEEEECCCEEEEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEECCCC
T ss_conf 455428999998624344799899974697688888751167-6332464457734489985111156865556750678
Q ss_pred C--CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEE-----CCHHHHHHHHHHHHH
Q ss_conf 4--101566366521357776156432202578888541027420144504575468760-----664789999999874
Q gi|254780264|r 400 P--IVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSG-----MGELHLEIIVDRMLR 472 (701)
Q Consensus 400 ~--~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g-----~GElhLev~l~~L~~ 472 (701)
| .++++.+-..|++++.+.|.+.+|.+.|.++|.+|...|.+|.++ +||-+-+-.| +|-||||++.+||.+
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC--CCCCHHCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 776668887767855998411166667899999997443353015632--252133057563010227899999999987
Q ss_pred HCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHH
Q ss_conf 11133201054101101444210355432115898753027899970288886479812002670024333256778999
Q gi|254780264|r 473 EFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIES 552 (701)
Q Consensus 473 ~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~ 552 (701)
+|++++-...|.|.|+=..+. |..+...| |.
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~------------------------------g~~~~i~N-------Ps------------ 393 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTD------------------------------GEEIEVDN-------PS------------ 393 (603)
T ss_pred HHCCCEEECCCCEEEEEEECC------------------------------CCEEEECC-------HH------------
T ss_conf 608634843894689999738------------------------------96899528-------57------------
Q ss_pred HHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 99718822550331289999511168767603379999999999998489889801789999838577457999997277
Q gi|254780264|r 553 MLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRR 632 (701)
Q Consensus 553 a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rr 632 (701)
.+|=.+ .. -.+.||+.++.|.+|++|+|.|+..++.+|
T Consensus 394 --------~~P~~~----------------~I------------------~~i~EP~v~~~ii~P~eylG~vm~Lcq~kR 431 (603)
T COG0481 394 --------DLPDPN----------------KI------------------EEIEEPYVKATIITPQEYLGNVMELCQEKR 431 (603)
T ss_pred --------HCCCHH----------------HH------------------HEEECCEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf --------688831----------------32------------------105176569999570788789999998722
Q ss_pred EEEEEEECCC-CEEEEEEEEEHHHH-CCHHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 0797453589-83999999604373-38478878630863798999629040
Q gi|254780264|r 633 GQIQGQENRS-VYVVIDAHVPLSCM-FKYVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 633 g~i~~~~~~~-~~~~i~a~iP~~e~-~gf~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
|...+++.-+ +...+...+|+.|. ++|-+.|+|.|+|.|+|.++|.+|++
T Consensus 432 G~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 432 GIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred CCEECCEEECCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 7646336703764999994647888888767642224650643110024640
No 22
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=613.90 Aligned_cols=449 Identities=28% Similarity=0.471 Sum_probs=378.1
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 710252799986878897789999999808732142201795----6137808898708537640799996077787138
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGGQKK 81 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~ 81 (701)
.+++.|+++||+|.|+|||||+|.||.+.|+|+.+|.|.+.. +.+|||+.||+|||||.||++.|.|. ++.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-----~~~ 82 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-----DCL 82 (528)
T ss_pred HHHHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECC-----CEE
T ss_conf 986434036885688885118899997230343055012225776342277888875685587657876038-----848
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99981798755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
|||+|||||-|||.+++|.|.++|.|++||||+.||++||+.+++.|..+++|++.|||||||.+.|+-+.+++|.+.|+
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 86147998654323678999864104689860358668899999998505984699750236566886899999999857
Q ss_pred CCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCE--EE---EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6833000234555665302442234431145222698513--87---400431788999999886300234578999863
Q gi|254780264|r 162 ANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWD--VV---EIPEDMKDSANSYRDKMIESIVELDDSAMDSYL 236 (701)
Q Consensus 162 ~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l 236 (701)
..+.|++||||.+..|.|++++......+|.....+.... .. ..|+-........++.+.|-+ |...
T Consensus 163 i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~--------EL~~ 234 (528)
T COG4108 163 IQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL--------ELVQ 234 (528)
T ss_pred CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHH--------HHHH
T ss_conf 75035524456885643223503587998426777654434444578886777762447999999999--------9997
Q ss_pred C-CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-778998898730000031010032343100012210248898987178621300012222456752101123456542
Q gi|254780264|r 237 Q-GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315 (701)
Q Consensus 237 ~-~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 315 (701)
. +..++ +...+.+++.|||||||++|+||+.+||++++|.|+|...+.... .+.+. +..++
T Consensus 235 ~a~~~Fd--------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~---------~v~p~-e~kfs 296 (528)
T COG4108 235 GAGNEFD--------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR---------EVEPT-EDKFS 296 (528)
T ss_pred HHCCCCC--------HHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC---------CCCCC-CCCCC
T ss_conf 4133208--------898856960115703323115889999999963899865446667---------31688-77543
Q ss_pred EECCCCCCC---CCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 010332116---54671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r 316 MLAFKVMAD---SFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD 392 (701)
Q Consensus 316 ~~v~K~~~d---~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd 392 (701)
++|||+..+ .++.|+||+||.||.+.+|+++.+...|+..+++....+++++++.+++|+||||++|.+-..+.+||
T Consensus 297 GFVFKIQANMDp~HRDRIAFmRV~SGkferGMk~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhGt~~IGD 376 (528)
T COG4108 297 GFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGD 376 (528)
T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEECC
T ss_conf 48999974899433420367863056435886533024487256161076764216657542687767146787213266
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 01277884101566366521357776156432202578888541027420144504575468760664789999999874
Q gi|254780264|r 393 TLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLR 472 (701)
Q Consensus 393 Tl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~ 472 (701)
|++.. ....|.+++...|-++..|..++|.+.++|.+||.+|++|-. +++.....+.+.+|+..|-||+||+.+||++
T Consensus 377 T~t~G-e~~~f~giP~FaPElfrrvrlkd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~ 454 (528)
T COG4108 377 TFTEG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKN 454 (528)
T ss_pred EECCC-CEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCE-EEEECCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 63158-556536899879999998861786888999999999865575-6996037788865874100137999999876
Q ss_pred HCCCCCEECCCCCCC
Q ss_conf 111332010541011
Q gi|254780264|r 473 EFKVDANVGAPYVSY 487 (701)
Q Consensus 473 ~f~iei~vs~P~V~y 487 (701)
+|++|+.+..-.++.
T Consensus 455 EY~ve~~~e~~~~~~ 469 (528)
T COG4108 455 EYNVEAVFEPVNFST 469 (528)
T ss_pred HHCCEEEEEECCCEE
T ss_conf 518707874055148
No 23
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=581.44 Aligned_cols=447 Identities=27% Similarity=0.431 Sum_probs=375.6
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 710252799986878897789999999808732142201795----6137808898708537640799996077787138
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGGQKK 81 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~ 81 (701)
.+++.||+|||.|.|+|||||||.+|.+.++|..+|.|.+.. +.+|||+.|++|||||.||++.|.|. +.+
T Consensus 7 EV~~RR~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~-----~~l 81 (530)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYR-----DCL 81 (530)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCC-----CCE
T ss_conf 885025543661688874246788887425665224412200122122137887505881444127741457-----745
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99981798755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
+||+|||||-|||.+++|.|.++|.|++||||+.||+.||+++++.|+-+.+|++.|+||+||++.++-+.+++|.+.|+
T Consensus 82 ~NLLDTPGH~DFSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P~ELlDEvE~~L~ 161 (530)
T TIGR00503 82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDPLELLDEVENELK 161 (530)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 62036858887640467999985123001111256123424454201000474433523206543553788888887706
Q ss_pred CCCCEECCCCCCCCCCCEEEEEHHHHHHCCC-CCCCCCCCEE-----EEECHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6833000234555665302442234431145-2226985138-----740043----17889999998863002345789
Q gi|254780264|r 162 ANPLVIQLPVGSESNFQGVIDLVEMKALLWK-NEDLGSSWDV-----VEIPED----MKDSANSYRDKMIESIVELDDSA 231 (701)
Q Consensus 162 ~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~-~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~lle~i~~~dd~~ 231 (701)
.++.+++||||.+..|+|++.+.....++|. ....++.... .+.|+- ..+....++++| |-|
T Consensus 162 ~~~~~~~~PIG~G~~F~GVY~~~~~~~yLy~r~G~~~~~~~~~~~~~L~~P~L~~~~G~D~~~~l~dEL-ELv------- 233 (530)
T TIGR00503 162 INCAPITYPIGCGKLFKGVYHLLKDEIYLYQRSGTGGTIKAVRVVKGLNNPALDSAVGSDLAQQLRDEL-ELV------- 233 (530)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHH-------
T ss_conf 411343056578843113554301406676305888416677776326880156776578999998899-999-------
Q ss_pred HHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99863277899889873000003101003234310001221024889898717862130001222245675210112345
Q gi|254780264|r 232 MDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDS 311 (701)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 311 (701)
.+.-.+.-+.....|.+.|||||||+.|+||+.+||+++.|.|.|...+..+..-.. ..
T Consensus 234 -----------~~A~~EFd~~~~~~GE~TPVFFG~Al~NFGV~~~L~~l~~~A~~P~~~~~~~~TvE~----------~~ 292 (530)
T TIGR00503 234 -----------EGASNEFDLAAFLGGELTPVFFGTALGNFGVDHFLDGLLQYAPKPEARQSDTRTVEP----------TE 292 (530)
T ss_pred -----------HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----------CC
T ss_conf -----------863024568998538646311100010100899999999860788876567754023----------43
Q ss_pred CCCCEECCCCCCC--C-CCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCC
Q ss_conf 6542010332116--5-467100001101334568368983265541110453210474454200356732641387444
Q gi|254780264|r 312 SPLSMLAFKVMAD--S-FVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKET 388 (701)
Q Consensus 312 ~pl~~~v~K~~~d--~-~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~ 388 (701)
..+++||||+..+ | |+.|+||.||.||+..+|++|.+...++...++.-..+++.+|..+++|+||||+++.+-..+
T Consensus 293 e~FsGFVFK~QANMDPKHRDRvAFlRV~SGKyEK~M~~k~~R~gK~V~~S~~~~~~A~~R~~v~~AYaGD~iGL~N~G~~ 372 (530)
T TIGR00503 293 EKFSGFVFKLQANMDPKHRDRVAFLRVVSGKYEKGMKLKHVRTGKDVVLSDALTLMAGDREHVEEAYAGDIIGLHNHGTI 372 (530)
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEEECCEEECCCEECCCCCCCEEEECCHHHHHHCCHHHHHHCCCCCEEEECCCCCE
T ss_conf 35442288863379886335057777641346347566142135536863235654402122311277765310688426
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCHHHHHHH
Q ss_conf 32110127788410156636652135777615643220257888854102742014450457--5468760664789999
Q gi|254780264|r 389 TTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNS--GQTNLSGMGELHLEII 466 (701)
Q Consensus 389 ~~gdTl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~et--GE~il~g~GElhLev~ 466 (701)
.+|||+...+. ..+++|+-..|-++..|..++|.+.+.|.+||.+|++|-. ++|-..-.. -..||++.|.||.||+
T Consensus 373 ~IGDT~~~GE~-~~f~gIP~F~PELF~~~R~~DP~~~K~l~KG~~~L~EEGA-VQv~~~l~~~krD~I~~AVG~LQF~VV 450 (530)
T TIGR00503 373 QIGDTFTQGEK-LKFTGIPNFAPELFRRLRLKDPLKQKQLLKGLVQLSEEGA-VQVLRPLDNNKRDLIVGAVGVLQFDVV 450 (530)
T ss_pred EECCCCCCCCE-EEECCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHCCCCCH-HHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 74772024865-6638778866789998621383455665504100022643-232311321477605542011468899
Q ss_pred HHHHHHHCCCCCEECCCCCCCC
Q ss_conf 9998741113320105410110
Q gi|254780264|r 467 VDRMLREFKVDANVGAPYVSYR 488 (701)
Q Consensus 467 l~~L~~~f~iei~vs~P~V~yr 488 (701)
..||+.+|+||.....-.|+.-
T Consensus 451 ~~RL~~EY~VE~~~E~~~~~~A 472 (530)
T TIGR00503 451 VYRLKEEYNVEAVYEPVNVALA 472 (530)
T ss_pred HHHHHCCCCEEEEEECCCCCHH
T ss_conf 8873001340356513463010
No 24
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=0 Score=561.25 Aligned_cols=268 Identities=35% Similarity=0.686 Sum_probs=261.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||+|+||+|+|||||+|+|||++|.|+++|+|++|+|+|||+++||+|||||.|+.+++.|+ +++|||||||||+
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~-----~~~inliDTPG~~ 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK-----GHKINLIDTPGYA 75 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEEC-----CEEEEEEECCCCH
T ss_conf 98999089999899999999966996657654589735778788986796751355788889-----9799998698975
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
||++||.++|+++|+||+||||++||++||+++|++|.+.++|+++|||||||.++++..++++++++|+.+++|+|+|+
T Consensus 76 DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad~~~~l~~i~~~lg~~~vp~~~Pi 155 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPI 155 (268)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 79999999840478399994187547687999999999859998999978787899647799999998689849999665
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
+.+.+|.|++|++.++++.|.+. ......++|++.......+|+.++|.+++.||++|++|+++++++.++++..++
T Consensus 156 g~g~~f~GvvDl~~~~a~~~~~~---~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~L~ekyle~~~l~~~el~~~l~ 232 (268)
T cd04170 156 GEGDDFKGVVDLLTEKAYIYSPG---APSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR 232 (268)
T ss_pred CCCCCCEEEEECCCCEEEEECCC---CCCEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 26887148876666779992399---972270597788888999988889888743899999986789989999999999
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 003101003234310001221024889898717862
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
+++++++++|||||||++|.|+++|||+|++++|||
T Consensus 233 ~~~~~g~~~PV~~GSA~~n~GV~~LLD~i~~~~PsP 268 (268)
T cd04170 233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999859589999747888809999999999768899
No 25
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=0 Score=545.98 Aligned_cols=270 Identities=66% Similarity=1.108 Sum_probs=263.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||+|+||+|+|||||+|+|||.+|.|++.|+|++|+++||++++|++|||||.++.+++.|+ +++|||||||||.
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~-----~~~inliDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK-----DHRINIIDTPGHV 75 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEEC-----CEEEEEEECCCCH
T ss_conf 98999689999889999999866873558155389755668488987687073366899989-----9899998696967
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
||++|+.++|+++|+||+||||++||++||+++|++|.+.++|+++|||||||..+|+..+++++++.|+..++|+|+|+
T Consensus 76 DF~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~lg~~~vp~~~Pi 155 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPI 155 (270)
T ss_pred HHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 88999999987755599998467644263699998899849998999988787788716689999998589738898563
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
+.+.+|.|++|+++++++.|.... +..+...++|++..+....+|+.++|.+++.||++|++|+++++++.++++..++
T Consensus 156 g~g~~f~GvvDll~~ka~~y~~~~-~~~~~~~~iP~~~~~~~~~~r~~L~E~vae~DdeLmekyle~~~l~~~el~~~l~ 234 (270)
T cd01886 156 GEEDDFRGVVDLIEMKALYWDGEL-GEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIR 234 (270)
T ss_pred CCCCCEEEEEECCCCEEEEECCCC-CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 278974799977878799841789-9723781374566899999999889888614899999975789999999999999
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 003101003234310001221024889898717862
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
++++.++++|||||||++|.|++.|||+|++++|||
T Consensus 235 ~a~~~g~i~PV~~GSA~~~~Gv~~LLd~i~~~~PsP 270 (270)
T cd01886 235 KGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999769589999708888809899999999768899
No 26
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=0 Score=516.39 Aligned_cols=263 Identities=31% Similarity=0.495 Sum_probs=238.5
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE----CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 25279998687889778999999980873214220----17956137808898708537640799996077787138999
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEV----HDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v----~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
|+|||||+||+|+|||||+|+|||.+|.|++.|+| ++|+|.+|++++|++|||||.++.+++.|. +++|||
T Consensus 1 ~~Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~-----~~kinl 75 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR-----DCVINL 75 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEEC-----CEEEEE
T ss_conf 901799984799998999999998668633385463036888604688799986594486363788789-----989999
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 81798755289999999860456999955888883479999999873997899981767658755556664111102683
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANP 164 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~ 164 (701)
||||||+||.+|+.++|+++|+||+||||++||++||+++|+++.+.++|+++|||||||..+|+..++++|+++|+.++
T Consensus 76 iDTPG~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~adf~~~l~~i~~~lg~~~ 155 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred EECCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 97969778999999999886454799525666535589999999972999799985345678987899999999868775
Q ss_pred CEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 30002345556653024422344311452226985138740043178899999988630023457899986327789988
Q gi|254780264|r 165 LVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSD 244 (701)
Q Consensus 165 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~ 244 (701)
+|+++|++.+..|.|++|+++++++.|.+...+.........+.. .+.+.+.++++++.|+++..+..+
T Consensus 156 vpi~lPig~~~~f~GvVDl~~~~a~~~~~~~~~~~~~~~~~~~~~-----------~~~~~e~~~~l~e~~~e~~el~~e 224 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLD-----------DPKLDELGGDLAEQLREELELLEG 224 (267)
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 116877516994479998677989980078899545425788677-----------799999759999999733567753
Q ss_pred HHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 9873000003101003234310001221024889898717862
Q gi|254780264|r 245 RIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 245 ~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
.+.+..+..++.++++|||||||++|.|+++|||+|++++|||
T Consensus 225 ~~~~~~~e~i~~g~i~PV~~GSA~~~~GV~~LLd~I~~~lPsP 267 (267)
T cd04169 225 AGPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred CCCHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 6550519999829787899988898809999999999767899
No 27
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=0 Score=477.06 Aligned_cols=237 Identities=38% Similarity=0.646 Sum_probs=223.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||+|+||+|||||||+|+|||.+|.|++.|+|++|++++|++++||+|||||+++.+++.|+ +++|||||||||+
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~-----~~~~n~iDtPG~~ 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-----DTKVNLIDTPGHM 75 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEEC-----CEEEEEEECCCCH
T ss_conf 98999389989999999999965712226633068303785499898487031058999989-----9879998898846
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
||.+|+.++|+++|+||+||||++|+++||+++|+++.+.++|+++|||||||..+|+..++++|+++|+..+.+++.|.
T Consensus 76 dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~ 155 (237)
T cd04168 76 DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 56668988976348169999658882234499999999859985998624457899999999999999789747677775
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
.....+.. ...++.++|.+++.||++|++|++++.++.+++...++
T Consensus 156 ~~~~~~~~----------------------------------~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~ 201 (237)
T cd04168 156 LAPNICET----------------------------------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELS 201 (237)
T ss_pred CCCCCCCC----------------------------------CCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 55664445----------------------------------44108899987646999999885789867889999999
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 003101003234310001221024889898717862
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
++++.++++|||||||++|.|+++|||+|++++||.
T Consensus 202 ~~~~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~PSa 237 (237)
T cd04168 202 ARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 999749298899678998959999999999877899
No 28
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=0 Score=408.03 Aligned_cols=149 Identities=41% Similarity=0.585 Sum_probs=138.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECC-----CCCCCEEEEEE
Q ss_conf 2799986878897789999999808732142201795613780889870853764079999607-----77871389998
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG-----RDGGQKKLTII 85 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~-----~~~~~~~iNlI 85 (701)
|||||+||+|||||||+|+||+.+|.+++ +..++.+|||++++||||||||||+++||.|+. .++++|+||||
T Consensus 1 RNi~iigHvdhGKTTL~D~Ll~~~g~i~~--~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlI 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISE--KLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCH--HCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEE
T ss_conf 96999866887799999999998598412--1066346514243342054158622689998603443456886389997
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 1798755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
|||||+||++||.++|+++||||+||||+||+++||+++||+|.++++|+|+|||||||++.|++..+++++.++.
T Consensus 79 DTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day~~l~ 154 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHHHHHH
T ss_conf 2885698999999999856817996104578577899999999985999799998903650011799899999999
No 29
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=401.37 Aligned_cols=151 Identities=30% Similarity=0.431 Sum_probs=141.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCC-CEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 279998687889778999999980873214220179-5613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDG-SATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g-~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
|||||+||+|||||||+|+||+.+|.+...+...++ .+|||++++||||||||+++.+++.|++.++++|+||||||||
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
|+||++||.++|+++||||+||||+|||++||+++||+|.++++|+|+|||||||++.|++..+++++.++.
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~ 152 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHH
T ss_conf 241799999888637767999987888757799999999986999899998823431440699899999899
No 30
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=363.64 Aligned_cols=145 Identities=37% Similarity=0.559 Sum_probs=136.7
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
|||||||+||+|||||||+|+||+.+|.+.+.+.+.+ ++||++++||||||||+++.+++.|+ +++||+||||
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~--~~~D~~~~E~ergiTI~~~~~~~~~~-----~~~~n~IDtP 73 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEE--RVMDSNDLERERGITILAKNTAVTYK-----DTKINIVDTP 73 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCE--EEECCCHHHHHCCCCEEEEEEEEEEC-----CEEEEEEECC
T ss_conf 9878999906898799999999997487630465216--86147588887287633458999989-----9889999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
||.||.+|+.++++++|+|||||||.+|+++||+.+|++|.+.++|+|+|||||||..++++++.+++.+.|
T Consensus 74 GH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~ 145 (194)
T cd01891 74 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 847777789877643446789865378975899999999987299749988564589888999999999999
No 31
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=100.00 E-value=0 Score=355.72 Aligned_cols=179 Identities=39% Similarity=0.574 Sum_probs=162.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|||||+||+|||||||+|+||+.+|.+.+.+ ...+++|++++|+||||||+++.+++.|++.+++.|.|||||||||
T Consensus 1 RNiaiiGHvd~GKTTL~~~ll~~tg~i~~~~---~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE---MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCC
T ss_conf 9599994899898999999999859954145---7324416517678638668743368884136787148999989986
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 55289999999860456999955888883479999999873997899981767658755556664111102683300023
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLP 170 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p 170 (701)
.||.+|+.++++++|+|||||||.+|+++||+.+|++|...++|+|+||||||+..+|++..++++++.++..+
T Consensus 78 ~dF~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g~~~------ 151 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDP------ 151 (179)
T ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC------
T ss_conf 45177898899754427899864778737489999999876998899986555677899999999999868897------
Q ss_pred CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 45556653024422344311452226985138740043178899999988630023457899986327789988987300
Q gi|254780264|r 171 VGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 (701)
Q Consensus 171 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l 250 (701)
T Consensus 152 -------------------------------------------------------------------------------- 151 (179)
T cd01890 152 -------------------------------------------------------------------------------- 151 (179)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 0003101003234310001221024889898717862
Q gi|254780264|r 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 251 ~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
.+++..||.++.|+..|||+|++++|+|
T Consensus 152 ---------~~~v~vSA~~g~gv~~Ll~~i~~~ip~p 179 (179)
T cd01890 152 ---------SEAILVSAKTGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred ---------CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf ---------6748843788979899999999648898
No 32
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=333.97 Aligned_cols=188 Identities=41% Similarity=0.687 Sum_probs=162.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||||+||+|||||||+|+|++.++.+.+.|.+. .+++|++++||+|||||+++.+++.|+ ++.|||||||||.
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~--~~~~d~~~~E~~rgiTi~~~~~~~~~~-----~~~i~~iDTPGh~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWP-----DRRVNFIDTPGHE 73 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEE--EEEECCCHHHHHCCCEEEEEEEEEEEC-----CEEEEEEECCCCH
T ss_conf 989991799899999999997647235686258--885057778886384132227999989-----9899999699818
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 5289999999860456999955888883479999999873997899981767658-755556664111102683300023
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG-ADFYRSVEMISSRLGANPLVIQLP 170 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~-~d~~~~l~~i~~~l~~~~~~~~~p 170 (701)
||..++.++++++|+||+||||.+|+++||+.+|+.+...++|+++|||||||.. .++++.++++.+.++.....
T Consensus 74 ~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~---- 149 (189)
T cd00881 74 DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI---- 149 (189)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH----
T ss_conf 8999999998646856999987989987899999999976998799998971877562999999999998753210----
Q ss_pred CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 45556653024422344311452226985138740043178899999988630023457899986327789988987300
Q gi|254780264|r 171 VGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 (701)
Q Consensus 171 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l 250 (701)
...
T Consensus 150 -----------------------------------------------------------------------------~~~ 152 (189)
T cd00881 150 -----------------------------------------------------------------------------STK 152 (189)
T ss_pred -----------------------------------------------------------------------------HHH
T ss_conf -----------------------------------------------------------------------------232
Q ss_pred CCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 0003101003234310001221024889898717862
Q gi|254780264|r 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 251 ~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
.......+.+|++++||++|.|++.|||++++++|+|
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 1101258877599988867869799999999768799
No 33
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5e-44 Score=301.41 Aligned_cols=129 Identities=30% Similarity=0.420 Sum_probs=113.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
.||+|+||||||||||+++|++..+.... ........+|+.++||||||||+++.+.+.|+ .+.+|+||||||
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~--~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~-----~~~~~~IDtPGH 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGG--AKFKKYDEIDKAPEEKARGITINTAHVEYETA-----NRHYAHVDCPGH 75 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCC--CCCCCCHHCCCCHHHHCCCCCCCCEEEEEECC-----CEEEEECCCCCH
T ss_conf 79999960588698999999998866344--44112001005466650588614418999608-----816996268960
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCC
Q ss_conf 55289999999860456999955888883479999999873997899-981767658
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVI-FCNKMDKMG 146 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~il-vINKiDr~~ 146 (701)
.||..+|.++++.+|+|||||||.+|+++||+..|..|.+.++|.++ +||||||..
T Consensus 76 ~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~ 132 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 778889986351136268998527787478999999999809996279996877898
No 34
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=4e-43 Score=295.66 Aligned_cols=184 Identities=40% Similarity=0.643 Sum_probs=153.7
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
++||||+|+||++||||||+++||..++.+.+.|....+. .+|++++|++|||||.++.+++.|. ++.||||||
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~-~~d~~~~E~~rgiTi~~~~~~~~~~-----~~~i~~iDt 74 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEG-ELDRLKEERERGITIKIAAVSFETK-----KRHINIIDT 74 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHCCEEEEEEEEEEEEC-----CCEEEEEEC
T ss_conf 9967899993899449999999971548765464310033-3365588885782698769999608-----936899989
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHCCCCCCCCCE
Q ss_conf 98755289999999860456999955888883479999999873997899981767658-75555666411110268330
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG-ADFYRSVEMISSRLGANPLV 166 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~-~d~~~~l~~i~~~l~~~~~~ 166 (701)
|||.||..++.++++.+|+|++||||.+|+++||+.+|+.+...++|+|+++||||+.. .++...+++
T Consensus 75 PGh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e----------- 143 (185)
T pfam00009 75 PGHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEE----------- 143 (185)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH-----------
T ss_conf 987143999999986465642999867685323099999999828987999977327776769999999-----------
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
+.+.+++.+..
T Consensus 144 ------------------------------------------------------------~~~~ll~~~~~--------- 154 (185)
T pfam00009 144 ------------------------------------------------------------ISRELLEKYGF--------- 154 (185)
T ss_pred ------------------------------------------------------------HHHHHHHHHHC---------
T ss_conf ------------------------------------------------------------99998887324---------
Q ss_pred HHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 7300000310100323431000122102488989871786
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
.....|+++.||+++.|+..|+|++..++|+
T Consensus 155 ---------~~~~~pivpiSA~~G~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 155 ---------GGETIPVIPGSALTGEGIDTLLEALDLYLPS 185 (185)
T ss_pred ---------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf ---------8998869996789997989999999977859
No 35
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-42 Score=292.22 Aligned_cols=270 Identities=27% Similarity=0.404 Sum_probs=193.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-=||+++||||||||||+.+|....+...+ ++ ......+|.+++||+|||||..+...|..+ +..|++||+||
T Consensus 12 ~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~-~~-~~~~~~~D~~~eEr~rGiTid~~~~~~~t~-----~~~~~~iD~PG 84 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGL-AQ-AKDYASIDAAPEEKARGITINTAHVEYETE-----KRHYAHVDCPG 84 (394)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHHCCC-CH-HHHHHHHCCCHHHHCCCCEEEEEEEEEECC-----CEEEEEEECCC
T ss_conf 749999951288489899897504545065-10-222233116655624782178418999728-----83699988897
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCC-CHHHHHH-HHCCCCCCCCCE
Q ss_conf 7552899999998604569999558888834799999998739978999-817676587-5555666-411110268330
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGA-DFYRSVE-MISSRLGANPLV 166 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~-d~~~~l~-~i~~~l~~~~~~ 166 (701)
|-||...|.++...+|+|+|||||.+|+++||+..+..+...++|.++| |||||.... ++.+.++ ++...+...
T Consensus 85 H~~fi~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~~--- 161 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSEY--- 161 (394)
T ss_pred CHHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC---
T ss_conf 25431104443534665899998587746779999999998299915999988789983999999999999999876---
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
.+
T Consensus 162 -------------------------------------------------------------------------g~----- 163 (394)
T PRK12736 162 -------------------------------------------------------------------------DF----- 163 (394)
T ss_pred -------------------------------------------------------------------------CC-----
T ss_conf -------------------------------------------------------------------------99-----
Q ss_pred HHHHCCEEECCEEEECCCCCEECC--------CCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 730000031010032343100012--------210248898987178621300012222456752101123456542010
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFKN--------KGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLA 318 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~~--------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v 318 (701)
..+-+|++.+|++.+ .++..||+++-.++|.|. ...++|+.+.|
T Consensus 164 ---------~~~~ip~i~~s~~~~~~~~~~~~~~i~~Ll~~ld~~~~~p~-------------------r~~~~p~r~~I 215 (394)
T PRK12736 164 ---------PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE-------------------RDTDKPFLMPV 215 (394)
T ss_pred ---------CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCCEEEEE
T ss_conf ---------91206099845436136887357789999999985277888-------------------87777628871
Q ss_pred CCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCC--CCCCCCC
Q ss_conf 33211654671000011013345683689832--65541110453210474454200356732641--387--4443211
Q gi|254780264|r 319 FKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGL--KETTTGD 392 (701)
Q Consensus 319 ~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl--~~~~~gd 392 (701)
..++..++.|.+..+||.||+++.||++.... ...+.+|.++- ....++++|.||+-|++ .|+ +++..|+
T Consensus 216 d~vf~v~G~GtVvtG~V~sG~i~~Gd~v~i~~~~~~~~~~VrsI~----~~~~~v~~a~aG~~v~l~L~gid~~~i~rG~ 291 (394)
T PRK12736 216 EDVFSITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGVDRDEVERGQ 291 (394)
T ss_pred EEEEEECCCEEEEEEEEEECEEECCCEEEEEECCCCCEEEEEEEE----ECCCCCCCCCCCCEEEEEECCCCHHHCCCEE
T ss_conf 117860897589999980146865998999707998079999873----6783724804767899997689989967166
Q ss_pred CCCCCCC
Q ss_conf 0127788
Q gi|254780264|r 393 TLCDPSR 399 (701)
Q Consensus 393 Tl~~~~~ 399 (701)
.||++..
T Consensus 292 vL~~~~~ 298 (394)
T PRK12736 292 VLAKPGS 298 (394)
T ss_pred EEECCCC
T ss_conf 9966998
No 36
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.2e-41 Score=286.04 Aligned_cols=280 Identities=28% Similarity=0.412 Sum_probs=200.7
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEECCC-CEECCCHHHHHHHCCCEEEEE
Q ss_conf 986567102527999868788977899999998087321------------4220179-561378088987085376407
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEVHDG-SATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v~~g-~~~~D~~~~E~eRgITi~ss~ 67 (701)
|+++=+ .=||+++||||||||||+.+||+.+|.++. .|+-.-. .-.||.+++||+|||||..+.
T Consensus 1 ~~~~K~---~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~ 77 (426)
T PRK12317 1 MAKEKP---HLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAH 77 (426)
T ss_pred CCCCCC---EEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEE
T ss_conf 999897---84999995228768888768987729944899999998998648775214321257866875582788316
Q ss_pred EEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCC--CCCHHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf 999960777871389998179875528999999986045699995588--8883479999999873997-8999817676
Q gi|254780264|r 68 TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNA--GVEPQTETVWRQADKYSVP-RVIFCNKMDK 144 (701)
Q Consensus 68 ~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~e--Gv~~qT~~vlr~~~~~~lp-~ilvINKiDr 144 (701)
..|.++ ...|+|||+|||-||...+.++...+|.|+|||||.+ |+++||+..+..+...++| +|++|||||.
T Consensus 78 ~~f~~~-----~~~~~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~ 152 (426)
T PRK12317 78 KKFETD-----KYYFTIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 152 (426)
T ss_pred EEEECC-----CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 999549-----816999878963667877874534677279999636566764778999999998099839999953335
Q ss_pred CCCC---HHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH
Q ss_conf 5875---5556664111102683300023455566530244223443114522269851387400431788999999886
Q gi|254780264|r 145 MGAD---FYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMI 221 (701)
Q Consensus 145 ~~~d---~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 221 (701)
...+ +..+.+++...+...
T Consensus 153 v~~~~~~~~~i~~~~~~~l~~~---------------------------------------------------------- 174 (426)
T PRK12317 153 VNYDEKRYNEVKEEVSKLLKMV---------------------------------------------------------- 174 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_conf 6778899999999999999970----------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCH------------HHHHHHHHHHCCCHHH
Q ss_conf 3002345789998632778998898730000031010032343100012210------------2488989871786213
Q gi|254780264|r 222 ESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGV------------QPLLDAVVDYLPSPLD 289 (701)
Q Consensus 222 e~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv------------~~LLd~i~~~lPsP~~ 289 (701)
.+. ...-.++|+ |++++.++ ..|++++-. +|.|.
T Consensus 175 ------------------g~~-----------~~~i~~iPi---Sa~~Gdni~~~s~~~~Wy~G~tLl~~L~~-~~~~~- 220 (426)
T PRK12317 175 ------------------GYK-----------PDDIPFIPV---SAFEGDNVVKKSDNTPWYNGPTLLEALDA-LKPPE- 220 (426)
T ss_pred ------------------CCC-----------CCCCEEEEE---ECCCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCC-
T ss_conf ------------------988-----------034708875---32346564116766863220789999863-77776-
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEE
Q ss_conf 00012222456752101123456542010332116546710000110133456836898326554111045321047445
Q gi|254780264|r 290 VRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSRE 369 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~ 369 (701)
...+.|+.+.|..++.-+..|++..|||.||+++.||+|.....+...+|.++... ..
T Consensus 221 ------------------~~~~~p~r~~I~~v~~~~g~Gtvv~G~v~sG~i~~Gd~v~i~Ps~~~~~VksI~~~----~~ 278 (426)
T PRK12317 221 ------------------KPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKVGDKVVFMPAGKVGEVKSIEMH----HE 278 (426)
T ss_pred ------------------CCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEC----CC
T ss_conf ------------------65578535578778840687079986844385437999999679986589768866----94
Q ss_pred EEEECCCCCEEEE--CCCC--CCCCCCCCCCCCCCCC
Q ss_conf 4200356732641--3874--4432110127788410
Q gi|254780264|r 370 DIDEAYCGDIIAL--AGLK--ETTTGDTLCDPSRPIV 402 (701)
Q Consensus 370 ~v~~a~aGdIv~I--~Gl~--~~~~gdTl~~~~~~~~ 402 (701)
++++|.||+-|++ .|++ ++..|+.||++.+++.
T Consensus 279 ~v~~a~aG~~v~l~L~~i~~~dI~rG~Vl~~~~~~~~ 315 (426)
T PRK12317 279 ELPQAEPGDNIGFNVRGVGKNDIKRGDVAGHTDNPPT 315 (426)
T ss_pred EEEEEECCCEEEEEEECCCHHCCCCCCEEECCCCCCC
T ss_conf 7889958986999983674422778648947999984
No 37
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.3e-41 Score=285.96 Aligned_cols=269 Identities=28% Similarity=0.396 Sum_probs=192.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 27999868788977899999998087321422017-95613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
=||+++||||||||||+.+|+..... ..|+-.. ....+|..++||+|||||..+...|..+ .+.|++||+||
T Consensus 13 ~ni~~~GHVD~GKSTL~g~Lt~~l~~--~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~-----~~~~~~iD~PG 85 (397)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAK--KYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETE-----KRHYAHVDCPG 85 (397)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH--HCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECC-----CCEEEEECCCC
T ss_conf 29999912588899999999866665--438531001333025766762581699879999728-----81499951786
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCC-CCHHHHHH-HHCCCCCCCCCE
Q ss_conf 7552899999998604569999558888834799999998739978999-81767658-75555666-411110268330
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMG-ADFYRSVE-MISSRLGANPLV 166 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~-~d~~~~l~-~i~~~l~~~~~~ 166 (701)
|-||.-.|.++...+|.|+|||||.+|+++||+..+..+...++|.++| |||||... .++.+.++ ++...+...-
T Consensus 86 H~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~~~~-- 163 (397)
T PRK00049 86 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD-- 163 (397)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC--
T ss_conf 388899987301215679999974888665289999999980998279999866888859999999999999998469--
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
+
T Consensus 164 --------------------------------------------------------------------------f----- 164 (397)
T PRK00049 164 --------------------------------------------------------------------------F----- 164 (397)
T ss_pred --------------------------------------------------------------------------C-----
T ss_conf --------------------------------------------------------------------------9-----
Q ss_pred HHHHCCEEECCEEEECCCCCEEC----------CCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 73000003101003234310001----------22102488989871786213000122224567521011234565420
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFK----------NKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSM 316 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~----------~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 316 (701)
.++-+|++..|+++ ..++..|++++-.++|.|. .+.++|+.+
T Consensus 165 ---------~~~~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~~~~p~-------------------r~~~~p~r~ 216 (397)
T PRK00049 165 ---------PGDDTPIIRGSALKALEEIGDPEWEAKILELMEAVDSYIPEPE-------------------RAIDKPFLM 216 (397)
T ss_pred ---------CCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC-------------------CCCCCCEEE
T ss_conf ---------8444768985500311477865317899999999986477888-------------------888886077
Q ss_pred ECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCC--CCCCC
Q ss_conf 1033211654671000011013345683689832--65541110453210474454200356732641--387--44432
Q gi|254780264|r 317 LAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGL--KETTT 390 (701)
Q Consensus 317 ~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl--~~~~~ 390 (701)
.|..++.-++.|.+..+||.||+++.||+|.... ...+.+|.++.. ...++++|.||+-|++ .|+ +++..
T Consensus 217 ~Id~vf~i~G~GtVVtGtv~sG~i~~Gd~v~i~~~~~~~~~~VksIq~----~~~~v~~a~aG~~v~i~L~gi~~~~I~r 292 (397)
T PRK00049 217 PIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEM----FRKLLDEGQAGDNVGLLLRGIKREDVER 292 (397)
T ss_pred EECCEEEECCCCEEEEEEEEEEEECCCCEEEEEECCCCCEEEEEEEEE----CCEEEEEECCCCEEEEEECCCCHHHCCC
T ss_conf 723388767972799989800056079989996069884799999996----2707026358877999977998898576
Q ss_pred CCCCCCCCC
Q ss_conf 110127788
Q gi|254780264|r 391 GDTLCDPSR 399 (701)
Q Consensus 391 gdTl~~~~~ 399 (701)
|+.||++..
T Consensus 293 G~vL~~p~~ 301 (397)
T PRK00049 293 GQVLAKPGS 301 (397)
T ss_pred CCEEECCCC
T ss_conf 019956998
No 38
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.1e-41 Score=284.58 Aligned_cols=278 Identities=28% Similarity=0.400 Sum_probs=195.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CEECCC------CEECCCHHHHHHHCCCEEEEEEEEEECCCCC
Q ss_conf 279998687889778999999980873214-------220179------5613780889870853764079999607778
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKI-------GEVHDG------SATMDWMEQEQERGITITSASTTVFWPGRDG 77 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~-------g~v~~g------~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~ 77 (701)
=||+++||||||||||+.+||+.+|.+... ...+.| .-.||.+++||+|||||..+...|..+
T Consensus 8 lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~---- 83 (449)
T PTZ00336 8 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESP---- 83 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECC----
T ss_conf 3999992778968888999998748847899999999998718751432545127722322875898679999749----
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCCEEEE-ECCCCCCCCCH
Q ss_conf 713899981798755289999999860456999955888883-------4799999998739978999-81767658755
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEP-------QTETVWRQADKYSVPRVIF-CNKMDKMGADF 149 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~-------qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~ 149 (701)
...|++||+|||-||.-.+.++...+|.|||||||.+|... ||+..+..+...+++.++| |||||....++
T Consensus 84 -~~~~~iiD~PGH~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~~ 162 (449)
T PTZ00336 84 -KSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTY 162 (449)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf -8489998689468889999976500676799998787741035566775399999998669977999986201566211
Q ss_pred -HHHHHHHCC----CCCC---CCC-EECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf -556664111----1026---833-0002345556653024422344311452226985138740043178899999988
Q gi|254780264|r 150 -YRSVEMISS----RLGA---NPL-VIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKM 220 (701)
Q Consensus 150 -~~~l~~i~~----~l~~---~~~-~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (701)
+...++|.. .+.. ++- .-.+|+. .+
T Consensus 163 ~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiS---a~------------------------------------------- 196 (449)
T PTZ00336 163 AQSRYDEISKEVGAYLKRVGYNPEKVRFIPIS---GW------------------------------------------- 196 (449)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CC-------------------------------------------
T ss_conf 37899999999999998749990005435420---10-------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCC
Q ss_conf 63002345789998632778998898730000031010032343100012210248898987178621300012222456
Q gi|254780264|r 221 IESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300 (701)
Q Consensus 221 le~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~ 300 (701)
.|+.+.. ...-.|.+.| ..||+++- .+|.|.
T Consensus 197 ----------------~Gdni~~------------~s~~~~Wy~G--------ptLl~~Ld-~~~~~~------------ 227 (449)
T PTZ00336 197 ----------------QGDNMIE------------KSDNMPWYKG--------PTLLDALD-MLEPPV------------ 227 (449)
T ss_pred ----------------CCCCCCC------------CCCCCCEECC--------CHHHHHHH-CCCCCC------------
T ss_conf ----------------4777532------------6555754105--------24899975-448987------------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEE
Q ss_conf 75210112345654201033211654671000011013345683689832655411104532104744542003567326
Q gi|254780264|r 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDII 380 (701)
Q Consensus 301 ~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv 380 (701)
...++||.+.|..++..+..|++..|||.||+++.||+|.....+...+|.++.... .++++|.||+-|
T Consensus 228 -------r~~~~p~r~pV~~vf~~~g~gtvv~G~V~sG~v~~Gd~V~i~Ps~~~~~VksI~~~~----~~v~~A~aG~~V 296 (449)
T PTZ00336 228 -------RPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHH----EQLAEAQPGDNV 296 (449)
T ss_pred -------CCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCEEEEEEEEECC----CEECEECCCCEE
T ss_conf -------756676423401077327883188899943630589999991799879998999899----385967799847
Q ss_pred EE--CCCC--CCCCCCCCCCCCC
Q ss_conf 41--3874--4432110127788
Q gi|254780264|r 381 AL--AGLK--ETTTGDTLCDPSR 399 (701)
Q Consensus 381 ~I--~Gl~--~~~~gdTl~~~~~ 399 (701)
++ .+++ ++..|+.++.+.+
T Consensus 297 ~i~L~~i~~~dI~rGdVl~~~~~ 319 (449)
T PTZ00336 297 GFNVKNVSVKDIRRGNVCGNSKN 319 (449)
T ss_pred EEECCCCCHHCCCCCCEEECCCC
T ss_conf 89248873530788639962899
No 39
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=100.00 E-value=6.2e-42 Score=287.99 Aligned_cols=124 Identities=24% Similarity=0.413 Sum_probs=110.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCC---------CCCCEEE
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996077---------7871389
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGR---------DGGQKKL 82 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~---------~~~~~~i 82 (701)
||||+||||||||||+++|.+..+ +..+|.+++||||||||+.+..+|..... +.++++|
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~-----------~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS-----------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCC-----------CHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 899997617899999999983335-----------012213588997797167100137851442211232346774589
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9981798755289999999860456999955888883479999999873997899981767658
Q gi|254780264|r 83 TIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 83 NlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
||||||||.||..++.++++++|+|+|||||.+|+++||+..|+.+...++|+|+++||||+..
T Consensus 71 ~~IDtPGH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9987798388998888887432652799987888878999999999985899799997412788
No 40
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-41 Score=285.50 Aligned_cols=270 Identities=26% Similarity=0.373 Sum_probs=193.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-=||+++||||||||||+.+|+...+...+ |+ ...-..+|..++||+|||||..+...|..+ .+.+++||+||
T Consensus 12 ~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~-~~-~~~~~~~D~~~eEr~rGiTid~~~~~fet~-----~~~~~~iD~PG 84 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGG-GE-AKAYDQIDNAPEEKARGITINTSHVEYETA-----NRHYAHVDCPG 84 (396)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CC-CCCHHHHCCCHHHHCCCEEEEEEEEEEECC-----CEEEEEEECCC
T ss_conf 349999942688589899998614545246-43-122122116656743773798569999739-----80599983686
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCC-CCHHHHHH-HHCCCCCCCCCE
Q ss_conf 7552899999998604569999558888834799999998739978999-81767658-75555666-411110268330
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMG-ADFYRSVE-MISSRLGANPLV 166 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~-~d~~~~l~-~i~~~l~~~~~~ 166 (701)
|-||.-.|.++...+|.|+|||||.+|+++||+..+..+...++|.++| |||||... .++.+.++ ++...|...-++
T Consensus 85 He~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~~~f~ 164 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68877666410042567999998687875316999999998399858999987588881999999999999999855999
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
T Consensus 165 -------------------------------------------------------------------------------- 164 (396)
T PRK12735 165 -------------------------------------------------------------------------------- 164 (396)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCEEECCEEEECCCCCEE----------CCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7300000310100323431000----------122102488989871786213000122224567521011234565420
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSF----------KNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSM 316 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~----------~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 316 (701)
.+-.|++.+|++ ...++..|++++-.++|.|. ...++|+.+
T Consensus 165 ----------~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~~~p~-------------------r~~~~pfrl 215 (396)
T PRK12735 165 ----------GDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYIPTPE-------------------RAIDKPFLM 215 (396)
T ss_pred ----------CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC-------------------CCCCCCEEE
T ss_conf ----------664779996733722588743444779999999885267877-------------------777886599
Q ss_pred ECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEE--CCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCC--CCCCC
Q ss_conf 103321165467100001101334568368983--265541110453210474454200356732641--387--44432
Q gi|254780264|r 317 LAFKVMADSFVGSLTFCRIYSGKISKGDSLLNT--VKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGL--KETTT 390 (701)
Q Consensus 317 ~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~--~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl--~~~~~ 390 (701)
.|-.++.-++.|.+..|||.||+++.||++... ..+.+.+|.++-. ...++++|.||+-|++ .|+ +++..
T Consensus 216 ~Id~vf~v~G~GtVVtGtV~sG~i~~Gd~v~i~~~~~~~~~~V~sIq~----~~~~v~~a~aG~~v~l~L~gi~~~~i~r 291 (396)
T PRK12735 216 PIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKDTQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVER 291 (396)
T ss_pred EEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEECCCCCEEEEEEEEE----CCCCCCEECCCCEEEEEECCCCHHHCCC
T ss_conf 976477767971599989812156279989997269984699999998----6708027148878999947998898562
Q ss_pred CCCCCCCCC
Q ss_conf 110127788
Q gi|254780264|r 391 GDTLCDPSR 399 (701)
Q Consensus 391 gdTl~~~~~ 399 (701)
|+.||.+..
T Consensus 292 G~VL~~p~~ 300 (396)
T PRK12735 292 GQVLAKPGS 300 (396)
T ss_pred EEEEECCCC
T ss_conf 679966998
No 41
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=6.4e-41 Score=281.47 Aligned_cols=287 Identities=24% Similarity=0.365 Sum_probs=194.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-=||+++||||||||||+.+|++..+...+. ... .-.-+|..++||+|||||..+...+... .+.+++||+||
T Consensus 12 ~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~-~~~-~~~~~D~~~eEr~rGiTid~~~~~~et~-----~~~~~~iD~PG 84 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAANGGA-KGK-KYDEIDSAPEEKARGITINTAHVEYETE-----NRHYAHVDCPG 84 (409)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCH-HHH-HHHHCCCCHHHHHCCCEEEECEEEEECC-----CEEEEEEECCC
T ss_conf 6999999545883999999986453004513-343-1553237976873694488024899628-----75999986796
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCC-CCHHHHHH-HHCCCCCCCCCE
Q ss_conf 7552899999998604569999558888834799999998739978999-81767658-75555666-411110268330
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMG-ADFYRSVE-MISSRLGANPLV 166 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~-~d~~~~l~-~i~~~l~~~~~~ 166 (701)
|-||...+.++...+|.|+|||||.+|+++||+..+..|...++|.++| |||||... .++.+.++ ++...|...-.+
T Consensus 85 H~~fv~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~~g~~ 164 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDKYDFP 164 (409)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999998752301581289998687885004999999997399936555556798548999999999999999973998
Q ss_pred -ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -0023455566530244223443114522269851387400431788999999886300234578999863277899889
Q gi|254780264|r 167 -IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDR 245 (701)
Q Consensus 167 -~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~ 245 (701)
-++|+-..+.+.|+ + .+....
T Consensus 165 ~~~i~~vp~sa~~~~---------------------------------~-------------------~~~~~~------ 186 (409)
T CHL00071 165 GDEIPIVAGSALLAL---------------------------------E-------------------ALIENP------ 186 (409)
T ss_pred CCCCEEEECCHHHHH---------------------------------H-------------------HHCCCC------
T ss_conf 455608965213323---------------------------------4-------------------312587------
Q ss_pred HHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 87300000310100323431000122102488989871786213000122224567521011234565420103321165
Q gi|254780264|r 246 IRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADS 325 (701)
Q Consensus 246 l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~ 325 (701)
......+.| -.+...|++++-.++|.|. .+.++|+.+.|..++.-+
T Consensus 187 -----~~~~~~~~w----------~~~~~~Ll~~l~~~~p~~~-------------------r~~~~p~r~~Id~vf~v~ 232 (409)
T CHL00071 187 -----KIKRGENKW----------VDKIYNLMDAVDSYIPTPE-------------------RDTDKPFLMAIEDVFSIT 232 (409)
T ss_pred -----CCCCCCCCH----------HHHHHHHHHHHHHCCCCCC-------------------CCCCCCEEEEECCEEECC
T ss_conf -----545565612----------4479999998872377888-------------------876776064422147538
Q ss_pred CCCCEEHHHHHCCCCCCCCEEEEE--CCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEEC--CCC--CCCCCCCCCCCCC
Q ss_conf 467100001101334568368983--2655411104532104744542003567326413--874--4432110127788
Q gi|254780264|r 326 FVGSLTFCRIYSGKISKGDSLLNT--VKGKKERVGRMLQMHSNSREDIDEAYCGDIIALA--GLK--ETTTGDTLCDPSR 399 (701)
Q Consensus 326 ~~G~~a~~RV~SGtL~~gd~i~~~--~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~--Gl~--~~~~gdTl~~~~~ 399 (701)
..|.++.|||.||+++.||++... ..++..+|.++.. ...++++|.||+.|++. |++ ++..|+.|+++..
T Consensus 233 G~GtVv~G~v~sG~v~~Gd~v~i~~~~~~~~~~VksI~~----~~~~~~~a~aG~~v~l~L~gi~~~~I~rG~VL~~p~~ 308 (409)
T CHL00071 233 GRGTVATGRIERGTVKVGDTVEIVGLRETRTTTVTGLEM----FQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGT 308 (409)
T ss_pred CCEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEE----CCCCCCEECCCCEEEEEECCCCHHHCCCEEEEECCCC
T ss_conf 978899999914563499989999769986079999998----8959888879988999975998788774689968999
No 42
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=100.00 E-value=1.6e-40 Score=278.85 Aligned_cols=282 Identities=24% Similarity=0.315 Sum_probs=193.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEE-CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 527999868788977899999998087321------------4220-179561378088987085376407999960777
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEV-HDGSATMDWMEQEQERGITITSASTTVFWPGRD 76 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v-~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~ 76 (701)
.=||+++||||||||||+.+||+..|.+.. .|+- .+-.-.||.+++||+|||||..+...|..+
T Consensus 7 ~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~--- 83 (443)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (443)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECC---
T ss_conf 65999994779828888999998738846889999988888717872000445307766763671073479999439---
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCCEEEE-ECCCCCCCCC
Q ss_conf 8713899981798755289999999860456999955888883-------4799999998739978999-8176765875
Q gi|254780264|r 77 GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEP-------QTETVWRQADKYSVPRVIF-CNKMDKMGAD 148 (701)
Q Consensus 77 ~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~-------qT~~vlr~~~~~~lp~ilv-INKiDr~~~d 148 (701)
.+.+++||+|||-||.-.+.++...+|.|||||||.+|+.. ||+..+..+...+++.++| |||||....+
T Consensus 84 --~~~~~iiD~PGH~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~~~ 161 (443)
T PTZ00141 84 --KYYYTVIDAPGHRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCDYK 161 (443)
T ss_pred --CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCH
T ss_conf --889999989972888999996341077589999867785213466678639999999973997599999962156660
Q ss_pred ---HHHHHHHHCCCCCCCC-CEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf ---5556664111102683-300023455566530244223443114522269851387400431788999999886300
Q gi|254780264|r 149 ---FYRSVEMISSRLGANP-LVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESI 224 (701)
Q Consensus 149 ---~~~~l~~i~~~l~~~~-~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i 224 (701)
+..+..++...+...- ..-++|+-.-+.+
T Consensus 162 e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~----------------------------------------------- 194 (443)
T PTZ00141 162 EDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGF----------------------------------------------- 194 (443)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-----------------------------------------------
T ss_conf 999999999999999973999566618963412-----------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCC
Q ss_conf 23457899986327789988987300000310100323431000122102488989871786213000122224567521
Q gi|254780264|r 225 VELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEI 304 (701)
Q Consensus 225 ~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 304 (701)
.|+.+.. + ..-.|.+-| ..|++++-. ++.|.
T Consensus 195 ------------~Gdni~~--------~----s~~~~Wy~G--------~tLle~Ld~-~~~~~---------------- 225 (443)
T PTZ00141 195 ------------EGDNMIE--------K----SDKMPWYKG--------KTLVEALDT-MEPPK---------------- 225 (443)
T ss_pred ------------CCCCCCC--------C----CCCCCEEHH--------HHHHHHHHC-CCCCC----------------
T ss_conf ------------4665324--------6----655644235--------689999856-89875----------------
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--
Q ss_conf 011234565420103321165467100001101334568368983265541110453210474454200356732641--
Q gi|254780264|r 305 DVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL-- 382 (701)
Q Consensus 305 ~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I-- 382 (701)
...++||.+.|..++..+..|++..|||.||+++.||+|.....+...+|.++.... .++++|.||+.|++
T Consensus 226 ---~~~~~p~r~pI~~v~~~~g~gtvv~G~V~sG~i~~Gd~v~i~Ps~~~~~VksI~~~~----~~v~~A~aG~~V~i~L 298 (443)
T PTZ00141 226 ---RPVDKPLRLPLQGVYKIGGIGTVPVGRVETGILKAGMVLTFAPSAVTTECKSVEMHH----EVVEEARPGDNVGFNV 298 (443)
T ss_pred ---CCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEEECCCEEEECCCCCEEEEEEEEECC----CEECEECCCCEEEEEC
T ss_conf ---655566534050388616873278767615699569789987799889998999899----6908786998379945
Q ss_pred CCC--CCCCCCCCCCCCCC
Q ss_conf 387--44432110127788
Q gi|254780264|r 383 AGL--KETTTGDTLCDPSR 399 (701)
Q Consensus 383 ~Gl--~~~~~gdTl~~~~~ 399 (701)
.|+ .++..|+.+|++.+
T Consensus 299 ~~i~~~dI~rG~Vl~~~~~ 317 (443)
T PTZ00141 299 KNVSTKDIKRGHVASDSKN 317 (443)
T ss_pred CCCCHHHCCCCEEEECCCC
T ss_conf 8986530278619766999
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=2.7e-40 Score=277.46 Aligned_cols=277 Identities=25% Similarity=0.323 Sum_probs=192.1
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEE---CCCCEECCCHHHHHHHCCCEEEEEEEEEE
Q ss_conf 02527999868788977899999998087321------------4220---17956137808898708537640799996
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEV---HDGSATMDWMEQEQERGITITSASTTVFW 72 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v---~~g~~~~D~~~~E~eRgITi~ss~~sl~~ 72 (701)
...=|+.++|||||||+||+.+|||.+|.+.. .|+- .+-.-.||.+++||||||||..+...|..
T Consensus 25 k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f~t 104 (475)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (475)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEEEC
T ss_conf 98579999905579778888999998199788999999999998288777222444205998898669716956789953
Q ss_pred CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHH
Q ss_conf 077787138999817987552899999998604569999558888834799999998739978999-8176765875555
Q gi|254780264|r 73 PGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGADFYR 151 (701)
Q Consensus 73 ~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~~~ 151 (701)
+ .+.|+++|+|||.||.-.|.++...+|.|||||||.+|+++||+..+..+...|++.++| |||||....+ +.
T Consensus 105 ~-----~r~~~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~-~~ 178 (475)
T PRK05124 105 E-----KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EE 178 (475)
T ss_pred C-----CEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCC-HH
T ss_conf 8-----76899973796387788898888767889999989889478889999999865998599998504313543-99
Q ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66641111026833000234555665302442234431145222698513874004317889999998863002345789
Q gi|254780264|r 152 SVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSA 231 (701)
Q Consensus 152 ~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~ 231 (701)
..++|...+.. +
T Consensus 179 ~f~~I~~e~~~--------------------------------------------------------------------~ 190 (475)
T PRK05124 179 VFERIREDYLT--------------------------------------------------------------------F 190 (475)
T ss_pred HHHHHHHHHHH--------------------------------------------------------------------H
T ss_conf 99999999999--------------------------------------------------------------------9
Q ss_pred HHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCH------------HHHHHHHHHHCCCHHHEECCCCCCCC
Q ss_conf 998632778998898730000031010032343100012210------------24889898717862130001222245
Q gi|254780264|r 232 MDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGV------------QPLLDAVVDYLPSPLDVRAIKGVDVK 299 (701)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv------------~~LLd~i~~~lPsP~~~~~~~~~~~~ 299 (701)
+.. ..+ .....++|+ ||+.|.++ ..||+.+-. +|.|.
T Consensus 191 l~~----~g~------------~~~v~~IPI---Sal~GdNIv~~S~~m~WY~GptLle~Le~-~~~~~----------- 239 (475)
T PRK05124 191 AEQ----LPG------------NLDIRFVPL---SALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQR----------- 239 (475)
T ss_pred HHH----CCC------------CCCCCEEEC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCCCC-----------
T ss_conf 997----499------------888507754---13457676215667874567539999855-88887-----------
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCE
Q ss_conf 67521011234565420103321165467100001101334568368983265541110453210474454200356732
Q gi|254780264|r 300 SNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDI 379 (701)
Q Consensus 300 ~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdI 379 (701)
...+.||.+-|-.+......++.-.|||.||++++||+|.+...++..+|.++..+.+ ++++|.||+-
T Consensus 240 --------~~~~~pfRlPVq~V~r~~~~~rg~~G~I~sG~i~~GD~V~vlPsg~~a~Vk~I~~~~~----~~~~A~aG~s 307 (475)
T PRK05124 240 --------EVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDG----DLEEAFAGEA 307 (475)
T ss_pred --------CCCCCCCCCCCEEEECCCCCCEEEEEEEEECEECCCCEEEECCCCCEEEEEEEEECCC----CCCCCCCCCE
T ss_conf --------6555665566579862687731688997133271799899938997589899996586----5254389987
Q ss_pred EEECCCC---CCCCCCCCCCCCCCCC
Q ss_conf 6413874---4432110127788410
Q gi|254780264|r 380 IALAGLK---ETTTGDTLCDPSRPIV 402 (701)
Q Consensus 380 v~I~Gl~---~~~~gdTl~~~~~~~~ 402 (701)
|+|. |+ ++..||.||++.+++.
T Consensus 308 V~l~-L~deiDIsRGdVl~~~~~~p~ 332 (475)
T PRK05124 308 ITLV-LEDEIDISRGDLLVAADEAPP 332 (475)
T ss_pred EEEE-EECCCCCCCCCEEECCCCCCC
T ss_conf 9999-603446899838973899867
No 44
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.7e-40 Score=275.40 Aligned_cols=260 Identities=21% Similarity=0.358 Sum_probs=182.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECC-C--------------
Q ss_conf 2799986878897789999999808732142201795613780889870853764079999607-7--------------
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG-R-------------- 75 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~-~-------------- 75 (701)
=||+++||||||||||+.+| +| .++|..++|++|||||+..-+.+.+-. .
T Consensus 9 vNIgtiGHVDHGKTTLv~aL---Tg------------~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~ 73 (410)
T PRK04000 9 VNIGMVGHVDHGKTTLVQAL---TG------------VWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTC 73 (410)
T ss_pred CEEEEEEEECCCHHHHHHHH---HC------------CCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCC
T ss_conf 26999965178699999887---39------------7542388788648812105101001205455544413530233
Q ss_pred -C-----CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEECCCCCCCC
Q ss_conf -7-----87138999817987552899999998604569999558888-83479999999873997-8999817676587
Q gi|254780264|r 76 -D-----GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADKYSVP-RVIFCNKMDKMGA 147 (701)
Q Consensus 76 -~-----~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~~~lp-~ilvINKiDr~~~ 147 (701)
. .....|++||||||.||...|.++...+|+|||||||.||+ ||||+..+..+...+++ .|+++||||....
T Consensus 74 ~~~~~~~~~~r~is~VD~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~ 153 (410)
T PRK04000 74 PKCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 153 (410)
T ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 44455544331699997988799999998402126679999865778767714999999998099837999962567898
Q ss_pred CHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55556664111102683300023455566530244223443114522269851387400431788999999886300234
Q gi|254780264|r 148 DFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVEL 227 (701)
Q Consensus 148 d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~ 227 (701)
+. .. .. .+++
T Consensus 154 e~--~~---------------------------------------------------------~~----~~ei------- 163 (410)
T PRK04000 154 EK--AL---------------------------------------------------------EN----YEQI------- 163 (410)
T ss_pred HH--HH---------------------------------------------------------HH----HHHH-------
T ss_conf 99--99---------------------------------------------------------99----9999-------
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCC
Q ss_conf 57899986327789988987300000310100323431000122102488989871786213000122224567521011
Q gi|254780264|r 228 DDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVS 307 (701)
Q Consensus 228 dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 307 (701)
..|+.+-.+ .-.|++..||.++.|++.|++++..++|.|.
T Consensus 164 -----~~~l~g~~~----------------~~~piipvSa~~g~~i~~L~~~l~~~~~~p~------------------- 203 (410)
T PRK04000 164 -----KEFVKGTVA----------------ENAPIIPVSALHGVNIDALIEAIEEEIPTPE------------------- 203 (410)
T ss_pred -----HHHHCCCCC----------------CCCCEEEEECCCCCCCCHHHHHHHHHCCCCC-------------------
T ss_conf -----998706765----------------6899999647778894089998986277877-------------------
Q ss_pred CCCCCCCCEECCCCC--------CCCCCCCEEHHHHHCCCCCCCCEEEEECCCC------------CCEEHHHHHHHCCC
Q ss_conf 234565420103321--------1654671000011013345683689832655------------41110453210474
Q gi|254780264|r 308 AVDSSPLSMLAFKVM--------ADSFVGSLTFCRIYSGKISKGDSLLNTVKGK------------KERVGRMLQMHSNS 367 (701)
Q Consensus 308 ~~~~~pl~~~v~K~~--------~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~------------~~kV~~l~~~~g~~ 367 (701)
.+.++|+.+.|-..+ .+.+.|.++-+||.+|+++.||+|......+ ..+|.++. ..
T Consensus 204 r~~~~~f~m~Vdr~F~i~g~Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~Pg~~~~~~~~~~~~pi~t~V~si~----~~ 279 (410)
T PRK04000 204 RDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEKGGKTKWEPITTKITSLR----AG 279 (410)
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEE----EC
T ss_conf 78889944899888850579865535644178889976278429989994474334566531122126998997----47
Q ss_pred EEEEEECCCCCEEEEC-CCC------CCCCCCCCCCCCC
Q ss_conf 4542003567326413-874------4432110127788
Q gi|254780264|r 368 REDIDEAYCGDIIALA-GLK------ETTTGDTLCDPSR 399 (701)
Q Consensus 368 ~~~v~~a~aGdIv~I~-Gl~------~~~~gdTl~~~~~ 399 (701)
..++++|.||+.+||. .|+ +...|+.++.+..
T Consensus 280 ~~~~~~a~aG~~vai~~~ld~~i~r~D~~rG~Vl~~pg~ 318 (410)
T PRK04000 280 GEKVEEARPGGLVGVGTKLDPALTKADALAGSVAGKPGT 318 (410)
T ss_pred CEEHHEECCCCEEEECCCCCCCCCHHHHHCCCEEECCCC
T ss_conf 839110136765852233455533557415655435997
No 45
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-37 Score=260.46 Aligned_cols=283 Identities=29% Similarity=0.419 Sum_probs=200.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEE-CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCC
Q ss_conf 27999868788977899999998087321------------4220-1795613780889870853764079999607778
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEV-HDGSATMDWMEQEQERGITITSASTTVFWPGRDG 77 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v-~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~ 77 (701)
=|++++|||||||+||+.+|||..|.+++ .|+- ..-.-.||..++|||||+||..+.++|+-.
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~---- 83 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD---- 83 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECC----
T ss_conf 2899983787870344556577737979899999999998619771689998538866786666899777886437----
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCC-
Q ss_conf 713899981798755289999999860456999955888-------8834799999998739978999-8176765875-
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPRVIF-CNKMDKMGAD- 148 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d- 148 (701)
-+.+++||||||-||.-++..+...+|.|||||||..| ++.||+..+-.+...|+.-++| |||||....|
T Consensus 84 -k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 -KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred -CCEEEEEECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf -7058996078467789876313313367999998889831014365875167899998569756999997156666279
Q ss_pred --HHHHHHHHCC---CCCCCCC-EECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
Q ss_conf --5556664111---1026833-000234555665302442234431145222698513874004317889999998863
Q gi|254780264|r 149 --FYRSVEMISS---RLGANPL-VIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIE 222 (701)
Q Consensus 149 --~~~~l~~i~~---~l~~~~~-~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle 222 (701)
|.++..++.. .++-++. +-.+|+. .|.|
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiS---g~~G------------------------------------------- 196 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPIS---GFKG------------------------------------------- 196 (428)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECC---CCCC-------------------------------------------
T ss_conf 999999999999999719986677079622---4467-------------------------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCC
Q ss_conf 00234578999863277899889873000003101003234310001221024889898717862130001222245675
Q gi|254780264|r 223 SIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNS 302 (701)
Q Consensus 223 ~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~ 302 (701)
..+.+.. +..|.|-| ..||+++- .+..|.
T Consensus 197 ----------------~Nl~~~s------------~~~pWY~G--------pTLleaLd-~~~~p~-------------- 225 (428)
T COG5256 197 ----------------DNLTKKS------------ENMPWYKG--------PTLLEALD-QLEPPE-------------- 225 (428)
T ss_pred ----------------CCCCCCC------------CCCCCCCC--------CHHHHHHH-CCCCCC--------------
T ss_conf ----------------7633267------------67867248--------71898974-557898--------------
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEE-
Q ss_conf 2101123456542010332116546710000110133456836898326554111045321047445420035673264-
Q gi|254780264|r 303 EIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIA- 381 (701)
Q Consensus 303 ~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~- 381 (701)
..-+.||.+-+..+..-...|.+..+||-||.|++||+|+....+..-.|+++..- .++++.+.|||.|+
T Consensus 226 -----~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~~a~~GD~i~~ 296 (428)
T COG5256 226 -----RPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEISQAEPGDNVGF 296 (428)
T ss_pred -----CCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEEC----CCCCCCCCCCCEEEE
T ss_conf -----77788817680017871688547887886134516987999648612787645612----665444789876889
Q ss_pred -ECCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf -13874--443211012778841015
Q gi|254780264|r 382 -LAGLK--ETTTGDTLCDPSRPIVLE 404 (701)
Q Consensus 382 -I~Gl~--~~~~gdTl~~~~~~~~~~ 404 (701)
+.|++ ++..||.++++.++....
T Consensus 297 ~vrgv~~~dI~~Gdv~~~~~n~~t~~ 322 (428)
T COG5256 297 NVRGVEKNDIRRGDVIGHSDNPPTVS 322 (428)
T ss_pred EECCCCHHCCCCCCEECCCCCCCCCC
T ss_conf 83577543167765740478886435
No 46
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.8e-37 Score=259.26 Aligned_cols=252 Identities=21% Similarity=0.266 Sum_probs=195.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+..||||||||||+-+| ||. -+|.+++||+|||||...-+.|..++ +..+.+||.|||-.
T Consensus 3 igTAGHVDHGKTsLvkAL---TG~------------dtDRL~EEk~RGiTIdLGFA~~~l~~----g~~~g~VDVPGHEr 63 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAI---TGV------------NADRLPEEKKRGMTIDLGYAYWPQPD----GRVLGFIDVPGHEK 63 (615)
T ss_pred EEEECCCCCCHHHHHHHH---HCC------------CCCCCHHHHHHCCEEEECEEEEECCC----CCEEEEEECCCHHH
T ss_conf 996365477899999998---688------------86569778971872771307555799----97899987998389
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCHH-HHHHHHCCCCCCCCCEECCC
Q ss_conf 2899999998604569999558888834799999998739978-999817676587555-56664111102683300023
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPR-VIFCNKMDKMGADFY-RSVEMISSRLGANPLVIQLP 170 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~-ilvINKiDr~~~d~~-~~l~~i~~~l~~~~~~~~~p 170 (701)
|.-.|.++..-.|.+++||+|.|||||||+..++.+...+++. +++|||+|+...+.- ...+++.+
T Consensus 64 FIknMlAG~~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~------------ 131 (615)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLE------------ 131 (615)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHH------------
T ss_conf 99999744643788999998899877237999999998199828999977656897999999999999------------
Q ss_pred CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 45556653024422344311452226985138740043178899999988630023457899986327789988987300
Q gi|254780264|r 171 VGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 (701)
Q Consensus 171 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l 250 (701)
.+...+++
T Consensus 132 -----------------------------------------------------------~l~~t~l~------------- 139 (615)
T PRK10512 132 -----------------------------------------------------------VLREYGFA------------- 139 (615)
T ss_pred -----------------------------------------------------------HHHCCCCC-------------
T ss_conf -----------------------------------------------------------98447876-------------
Q ss_pred CCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCE
Q ss_conf 00031010032343100012210248898987178621300012222456752101123456542010332116546710
Q gi|254780264|r 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSL 330 (701)
Q Consensus 251 ~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~ 330 (701)
-.|++..||.++.|+..|.+++....+.+ ...++++.+.|=.++.-.+.|.+
T Consensus 140 --------~~pi~~vSa~tg~Gi~~L~~~L~~l~~~~--------------------~~~~~~fRL~IDRvFsvkG~GTV 191 (615)
T PRK10512 140 --------EAKLFVTAATEGRGIDALREHLLQLPERE--------------------HASQHRFRLAIDRAFTVKGAGLV 191 (615)
T ss_pred --------CCCEEECCCCCCCCHHHHHHHHHHHCCCC--------------------CCCCCCEEEEEEEEEECCCCCEE
T ss_conf --------79752014566679999999998625566--------------------67677617883118962688569
Q ss_pred EHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CC-C--CCCCCCCCCCCCCC
Q ss_conf 0001101334568368983265541110453210474454200356732641--38-7--44432110127788
Q gi|254780264|r 331 TFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AG-L--KETTTGDTLCDPSR 399 (701)
Q Consensus 331 a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~G-l--~~~~~gdTl~~~~~ 399 (701)
+.|-++||+++.||+|+....+...+|.++- .+| .+++++.||+=||| .| + +++.-||.|+++..
T Consensus 192 VTGTl~sG~v~~GD~l~i~P~~~~~rVR~iQ-~h~---~~v~~a~aG~R~AlNL~G~v~~~~i~RGd~L~~~~~ 261 (615)
T PRK10512 192 VTGTALSGEVKVGDTLWLTGVNKPMRVRALH-AQN---QPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAP 261 (615)
T ss_pred EEEEEECCEECCCCEEEECCCCCEEEEEEHH-HCC---CCCCEECCCCEEEEEECCCCCHHHCCCCCEEECCCC
T ss_conf 9999814714269989986999679873477-679---815573277459996125446723178668923888
No 47
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=257.04 Aligned_cols=278 Identities=26% Similarity=0.352 Sum_probs=191.1
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEE---CCCCEECCCHHHHHHHCCCEEEEEEEEE
Q ss_conf 102527999868788977899999998087321------------4220---1795613780889870853764079999
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEV---HDGSATMDWMEQEQERGITITSASTTVF 71 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v---~~g~~~~D~~~~E~eRgITi~ss~~sl~ 71 (701)
-..+=|+.++|||||||+||+.+|||.+|.+.. .|.- -+-.-.||.+++|||+||||..+-..|.
T Consensus 4 ~k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~ 83 (613)
T PRK05506 4 RKTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFS 83 (613)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEE
T ss_conf 77625899993667978889889999819967899999999999818988860354421488889855971685677884
Q ss_pred ECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHH
Q ss_conf 6077787138999817987552899999998604569999558888834799999998739978999-817676587555
Q gi|254780264|r 72 WPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGADFY 150 (701)
Q Consensus 72 ~~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~~ 150 (701)
.+ ...|.++|||||.+|.-.|.++...+|.||+||||.+|+..||++....+...|++.++| |||||....+ +
T Consensus 84 t~-----~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~-~ 157 (613)
T PRK05506 84 TP-----KRKFIVADTPGHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYD-Q 157 (613)
T ss_pred CC-----CEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH-H
T ss_conf 38-----70599942896798998999878653879999988879515518999999872987599998520124781-9
Q ss_pred HHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56664111102683300023455566530244223443114522269851387400431788999999886300234578
Q gi|254780264|r 151 RSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDS 230 (701)
Q Consensus 151 ~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~ 230 (701)
...++|.+.+.
T Consensus 158 ~~f~~I~~~~~--------------------------------------------------------------------- 168 (613)
T PRK05506 158 EVFDRIVADYL--------------------------------------------------------------------- 168 (613)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
T ss_conf 99999999999---------------------------------------------------------------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCH------------HHHHHHHHHHCCCHHHEECCCCCCC
Q ss_conf 9998632778998898730000031010032343100012210------------2488989871786213000122224
Q gi|254780264|r 231 AMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGV------------QPLLDAVVDYLPSPLDVRAIKGVDV 298 (701)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv------------~~LLd~i~~~lPsP~~~~~~~~~~~ 298 (701)
.|+.. .......++|+ ||++|..+ ..||+.+-.. +.+
T Consensus 169 ---~~~~~-------------l~~~~~~~IPI---SAl~GDNVv~~S~~m~WY~GptLle~Le~~-~~~----------- 217 (613)
T PRK05506 169 ---AFAAK-------------LGLTDVTFIPI---SALKGDNVVTRSARTPWYEGPSLLEHLETV-EIA----------- 217 (613)
T ss_pred ---HHHHH-------------CCCCCCEEEEC---CCCCCCEEEECCCCCCCCCCCCHHHHHHCC-CCC-----------
T ss_conf ---99965-------------79988759967---357487476788788666786589997377-878-----------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCC
Q ss_conf 56752101123456542010332116546710000110133456836898326554111045321047445420035673
Q gi|254780264|r 299 KSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGD 378 (701)
Q Consensus 299 ~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGd 378 (701)
....+.|+.+-|--+.......|.-.|||.||++++||+|.+...|++.+|++++.+.+ ++++|.+|+
T Consensus 218 --------~~~~~~~fR~PVQ~V~Rp~~dfRgyaGrI~sG~ikvGD~V~vlPSg~~s~Vk~I~~~~~----~~~~A~agq 285 (613)
T PRK05506 218 --------GDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTYDG----ELDEAFAGQ 285 (613)
T ss_pred --------CCCCCCCCEEEEEEEECCCCCEEEEEEEECCEEECCCCEEEECCCCCEEEEEEEECCCC----CHHHCCCCC
T ss_conf --------66445671211178744787505799998413672699899878998799999986899----764133898
Q ss_pred EEEECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 26413874--4432110127788410
Q gi|254780264|r 379 IIALAGLK--ETTTGDTLCDPSRPIV 402 (701)
Q Consensus 379 Iv~I~Gl~--~~~~gdTl~~~~~~~~ 402 (701)
=+.|.=-+ ++.-||.|+.+.+++.
T Consensus 286 SVtltL~dEIDISRGDvI~~~~~~p~ 311 (613)
T PRK05506 286 AVTLTLADEIDISRGDMLARADNPPE 311 (613)
T ss_pred EEEEEECCCEECCCCCEEECCCCCCC
T ss_conf 08999746264379868964899887
No 48
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=100.00 E-value=6.3e-38 Score=262.28 Aligned_cols=260 Identities=24% Similarity=0.369 Sum_probs=196.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHH-HHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 7999868788977899999998087321422017956137808898-708537640799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ-ERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~-eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
+|+..||||||||||+-.| ||.-+ |-+|.+|+|+ .|||||...-+++.+++ .++.+.|||-|||
T Consensus 2 ~~at~GHvDHGKT~L~k~L---Tgi~s---------tsa~~lPeEkqKRG~tIDLGfAy~~l~~---~n~~l~~iDvPGH 66 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL---TGIDS---------TSADRLPEEKQKRGMTIDLGFAYLPLPD---INKRLGFIDVPGH 66 (627)
T ss_pred EEEEECCCCHHHHHHHHHH---CCCCC---------HHHHCCCCCCCCCCCEEECCCEECCCCC---CCCCCEEEECCCH
T ss_conf 6873124450479999985---06430---------1231277410257662460420036777---7713347855973
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECC
Q ss_conf 55289999999860456999955888883479999999873997-89998176765875555666411110268330002
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQL 169 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~ 169 (701)
--|...+.+++..+|+|+|||||.|||++||...|+-+...++| .|+|||||||..-+.-.
T Consensus 67 e~fl~n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~------------------ 128 (627)
T TIGR00475 67 EKFLSNALAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVK------------------ 128 (627)
T ss_pred HHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH------------------
T ss_conf 89999986675654010035415778853238999999970896199997346745658999------------------
Q ss_pred CCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 34555665302442234431145222698513874004317889999998863002345789998632778998898730
Q gi|254780264|r 170 PVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSL 249 (701)
Q Consensus 170 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~ 249 (701)
.. |..+..+++...+
T Consensus 129 ------------------------------------------~~---------------E~~~~~~l~~~~~-------- 143 (627)
T TIGR00475 129 ------------------------------------------RV---------------EEELKEILEEYEF-------- 143 (627)
T ss_pred ------------------------------------------HH---------------HHHHHHHHHHHHH--------
T ss_conf ------------------------------------------99---------------9999999876432--------
Q ss_pred HCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 00003101003234310001221024889898717862130001222245675210112345654201033211654671
Q gi|254780264|r 250 IRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGS 329 (701)
Q Consensus 250 l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~ 329 (701)
..+.+ ++..||.+|.|+..|=+.+...+-+- + ...+-..||.+.|=..+.=.+.|.
T Consensus 144 ----~~n~~---~~~~SA~tG~Gi~~Lk~~L~~L~e~~-~----------------~~r~~~~~lr~~iD~aF~vKG~Gt 199 (627)
T TIGR00475 144 ----LKNAK---IFKTSAKTGQGIEELKKELKNLLESL-D----------------IKRDKQKPLRLAIDRAFKVKGAGT 199 (627)
T ss_pred ----HCCCC---EEEEECCCCCCHHHHHHHHHHHHHHH-H----------------HHHCCCCCCCCCCCEEEEECCCEE
T ss_conf ----11574---79991346877789999998657776-5----------------542015666510321558703024
Q ss_pred EEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEEC---CCC--CCCCCCCCCCC
Q ss_conf 000011013345683689832655411104532104744542003567326413---874--44321101277
Q gi|254780264|r 330 LTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALA---GLK--ETTTGDTLCDP 397 (701)
Q Consensus 330 ~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~---Gl~--~~~~gdTl~~~ 397 (701)
+.-|-+|||+++.||.|+....|.+.||..+.- ...+++.|.||+=+|+. +++ ++.-||.+|-.
T Consensus 200 VvtGt~f~G~VkvGD~~~~~pig~~~rvk~~~~----~~~~~~~A~AG~RiALnL~~~vd~~~~~RGDWll~~ 268 (627)
T TIGR00475 200 VVTGTAFSGEVKVGDKLVLEPIGKEVRVKAIQA----QNQDVEKAVAGQRIALNLAADVDKEKLKRGDWLLIL 268 (627)
T ss_pred EEEEEEEEEEEEECCEEEEEECCCEEEEEEEEC----CCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEECC
T ss_conf 687557841689888899810583678864020----588522100201365412345761225665122027
No 49
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=3.5e-37 Score=257.49 Aligned_cols=132 Identities=33% Similarity=0.493 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC--C-------CEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 7999868788977899999998087321--4-------2201795----6137808898708537640799996077787
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHK--I-------GEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGG 78 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~--~-------g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~ 78 (701)
||+++||||||||||+++||+.+|.+.. . ++..++. -+||++++||||||||.++...|.|+
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEEC-----
T ss_conf 989996689989999999999859976889999999998549987505566138987985892588589999849-----
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCE-EEEECCCCCCCCC
Q ss_conf 13899981798755289999999860456999955888-------8834799999998739978-9998176765875
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPR-VIFCNKMDKMGAD 148 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~-ilvINKiDr~~~d 148 (701)
++.+||||||||.||..++.++++.+|.|||||||.+| +++||+..++.+...+++. |++|||||....+
T Consensus 76 ~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~ 153 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 936999878972667889998775316689999857675103667776599999999984997489999875368865
No 50
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=100.00 E-value=3.5e-36 Score=251.03 Aligned_cols=248 Identities=29% Similarity=0.394 Sum_probs=186.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|+|.||||||||||+|+|-..+-.-..+| |||=+-.+....+.+ ..|+|||||||.
T Consensus 119 vVtimGHVDHGKTsLLD~iR~t~V~~~EaG------------------GITQhIGA~~v~~~~-----~~itFiDTPGHe 175 (610)
T PRK12312 119 IVTIMGHVDHGKTTLLDTIRKTNVVASEAG------------------GITQHIGAYQVEYQG-----KKITFIDTPGHE 175 (610)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC------------------CCCCEECEEEEEECC-----CEEEEECCCCHH
T ss_conf 899967725772258899854864134677------------------664400449998679-----768997289679
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
=|+.==.|+..++|-|||||+|.+||+|||...+.++.+.++|+|+.|||||++.++.+.+..++.+. +.
T Consensus 176 AFt~mR~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~-g~--------- 245 (610)
T PRK12312 176 AFTEMRARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKY-DL--------- 245 (610)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH-CC---------
T ss_conf 89999970776545799999757897742699999999759988998504467889878999999870-76---------
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
+ .++ +|..
T Consensus 246 ---------~-----------~E~-----------------------------------------~GGd----------- 253 (610)
T PRK12312 246 ---------V-----------PEE-----------------------------------------WGGD----------- 253 (610)
T ss_pred ---------C-----------HHH-----------------------------------------HCCC-----------
T ss_conf ---------6-----------788-----------------------------------------5794-----------
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEE
Q ss_conf 00310100323431000122102488989871786213000122224567521011234565420103321165467100
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a 331 (701)
..++|+ ||.++.|+..||++|.-.. ...++++++++|..+.|.-...+..+|.++
T Consensus 254 -----v~~V~i---SAktg~GId~LLe~IlL~A-----------------E~leLka~~~~~a~G~VIEsk~dkg~G~va 308 (610)
T PRK12312 254 -----TPFVYG---SALKNEGIDELLDSILLLA-----------------EILNLKANPNRLAIGTVIEAKLDKGKGPVA 308 (610)
T ss_pred -----CEEEEE---ECCCCCCHHHHHHHHHHHH-----------------HHHHHHCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf -----459990---3687989999999999999-----------------987652278986069999978616876368
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCC-CCCCCC
Q ss_conf 001101334568368983265541110453210474454200356732641387444-321101
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKET-TTGDTL 394 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~-~~gdTl 394 (701)
-+=|++|||+.||.+......- ||..++-..| .++.+|.|+.-|-|.|++.+ ..||.+
T Consensus 309 tviVq~GtLk~GD~iV~G~~~G--kVRam~d~~g---~~lk~A~PS~pV~I~Gl~~vP~aGd~~ 367 (610)
T PRK12312 309 TLIVQNGTLKVGDFIVAGSTYG--KIRSMEDENG---KKLKKALPSTPVKVSGLNEVPQAGDKF 367 (610)
T ss_pred EEEEECCEEECCCEEEECCCCC--CCCEEECCCC---CCCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 9998358781599899898668--6215773678---614341799857984675675679769
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=8.6e-36 Score=248.54 Aligned_cols=252 Identities=24% Similarity=0.329 Sum_probs=190.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|.|.||||||||||+|+|=.. +|.+|.. -|||=+-.+....++.. .....|+|||||||.
T Consensus 274 VVTIMGHVDHGKTsLLD~iR~t--------~Va~~Ea----------GGITQhIGAy~V~~~~~-~~~~~ITFlDTPGHe 334 (770)
T CHL00189 274 IVTILGHVDHGKTTLLDAIRKT--------NIAQKEA----------GGITQKIGAYEVEVPYK-DQNQKIVFLDTPGHE 334 (770)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--------CCCCCCC----------CCCCCEECEEEEEECCC-CCCCEEEEECCCCHH
T ss_conf 8998577257720378888528--------8513456----------76555035299975157-889758995599468
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
=|+.==.|+..++|-+||||.|.+||+|||...+.+|...++|+|+.|||||++.++++.+..++.++ +. .+
T Consensus 335 AFt~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~-gl--i~----- 406 (770)
T CHL00189 335 AFSSMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKY-NL--IS----- 406 (770)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CC--CH-----
T ss_conf 89999862786666799999657885672799999998769988999877458998857899999986-95--52-----
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
+.| |..
T Consensus 407 ----------------------Eew-----------------------------------------GGd----------- 412 (770)
T CHL00189 407 ----------------------EKW-----------------------------------------GGQ----------- 412 (770)
T ss_pred ----------------------HHC-----------------------------------------CCC-----------
T ss_conf ----------------------223-----------------------------------------795-----------
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEE
Q ss_conf 00310100323431000122102488989871786213000122224567521011234565420103321165467100
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a 331 (701)
+|+...||+++.|++.||++|.-.. +..++++++++|..+.|.-...|..+|.+|
T Consensus 413 --------~~~V~ISAktg~gId~LLE~IlL~A-----------------EvlELkAnp~~~A~GvVIES~ldkgrG~VA 467 (770)
T CHL00189 413 --------TPMIPISALQGTNIDKLLEMILLLA-----------------EIENLQADPTQLAQGTILEAHLDKTKGPVA 467 (770)
T ss_pred --------EEEEEEEECCCCCHHHHHHHHHHHH-----------------HHHHCCCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf --------5999966167988799999999998-----------------787523688986149999976516867768
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCC-CCCCCC
Q ss_conf 001101334568368983265541110453210474454200356732641387444-321101
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKET-TTGDTL 394 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~-~~gdTl 394 (701)
.+=|-+|||+.||.+.....- -||..+ .-..-..+.+|.|+..|-|.|++.+ ..||.+
T Consensus 468 TvLVQ~GTLkvGD~iVaG~~~--GKVRaM---~Dd~Gk~vkeA~PS~PVeIlGl~~vP~AGD~f 526 (770)
T CHL00189 468 TLLVQNGTLRIGDIIVAGTSL--GKIRGM---INSAGNKINEAGPSSPVEIWGLSSVPATGEYF 526 (770)
T ss_pred EEEEECCEECCCCEEEECCCE--EEEEEE---ECCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 999954844039999983634--478898---89999844554899868987787898779889
No 52
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=4.2e-36 Score=250.57 Aligned_cols=368 Identities=27% Similarity=0.407 Sum_probs=236.2
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CE-----ECCC-C-----EECCCHHHHHHHCCCEEEEE
Q ss_conf 9865671025279998687889778999999980873214--22-----0179-5-----61378088987085376407
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKI--GE-----VHDG-S-----ATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~--g~-----v~~g-~-----~~~D~~~~E~eRgITi~ss~ 67 (701)
|+|+- ..=||++||||||||+|++.+|||.+|.|.+. -+ -+.| . =+||.+++||||||||..+.
T Consensus 1 MaKeK---~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~ 77 (445)
T TIGR00483 1 MAKEK---EHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH 77 (445)
T ss_pred CCCCC---CEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 97654---324489982540885026677775428965899999987575518730367654311000001562243344
Q ss_pred EEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCEEEE-E
Q ss_conf 9999607778713899981798755289999999860456999955888-------8834799999998739978999-8
Q gi|254780264|r 68 TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPRVIF-C 139 (701)
Q Consensus 68 ~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~ilv-I 139 (701)
.-|.. .-|.+++||||||-||.-.+.++.+.+|.||||||+.+| +++||+..+-.++..|+.-++| |
T Consensus 78 ~KFeT-----~KY~~TivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAi 152 (445)
T TIGR00483 78 KKFET-----DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAI 152 (445)
T ss_pred HHCCC-----CCEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEE
T ss_conf 54178-----8516999846987013431126675124279999525441024012178605778887750320453331
Q ss_pred CCCCCCCCC---HHHHHHHHCC----CCCCCCCEE-CCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHH
Q ss_conf 176765875---5556664111----102683300-02345556653024422344311452226985138740043178
Q gi|254780264|r 140 NKMDKMGAD---FYRSVEMISS----RLGANPLVI-QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKD 211 (701)
Q Consensus 140 NKiDr~~~d---~~~~l~~i~~----~l~~~~~~~-~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (701)
||||+...| +....+++.. .+|-++..+ .+|+.+ |.| |-.-.+ .....|
T Consensus 153 NKMD~V~yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~---~~G--DN~~~~-------s~~~PW----------- 209 (445)
T TIGR00483 153 NKMDSVNYDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISA---FEG--DNVIKK-------SENTPW----------- 209 (445)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC---CCC--CCHHHH-------HCCCCC-----------
T ss_conf 024610027789999999999989987488756123254035---467--613433-------038885-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEE
Q ss_conf 89999998863002345789998632778998898730000031010032343100012210248898987178621300
Q gi|254780264|r 212 SANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVR 291 (701)
Q Consensus 212 ~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~ 291 (701)
++ .+ +.+. +.+... | ..||+|+-..- .|.
T Consensus 210 -------------Yk----gw----------e~e~----~agvv~---------------G-~TL~EA~D~~~-~P~--- 238 (445)
T TIGR00483 210 -------------YK----GW----------EKET----KAGVVK---------------G-KTLLEALDALE-PPE--- 238 (445)
T ss_pred -------------CC----CC----------CCCC----CCEEEC---------------C-CHHHHHHHHHC-CCC---
T ss_conf -------------25----52----------2000----230221---------------8-45898873104-786---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEE
Q ss_conf 01222245675210112345654201033211654671000011013345683689832655411104532104744542
Q gi|254780264|r 292 AIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDI 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v 371 (701)
..-+.||..-+-.++.-...|++-.+||-+|.||+|+.|.-...|-.-.|+++ .|+ ++.+
T Consensus 239 ----------------kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGVsgEVKSi-EMH---HE~i 298 (445)
T TIGR00483 239 ----------------KPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSI-EMH---HEQI 298 (445)
T ss_pred ----------------CCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCCCCCCEEEE-EEC---CCCC
T ss_conf ----------------43467730553003575336622346020242644887896378843121367-611---3436
Q ss_pred EECCCCCEEE--ECC--CCCCCCCCCCCCCCC-CCCCCCCCCC--------CCEEEEEEEECCCCCCHHHHHH-HHHHHC
Q ss_conf 0035673264--138--744432110127788-4101566366--------5213577761564322025788-885410
Q gi|254780264|r 372 DEAYCGDIIA--LAG--LKETTTGDTLCDPSR-PIVLERMDFP--------EPVIQIAIEPKSKGDQERMSLA-LSRLVA 437 (701)
Q Consensus 372 ~~a~aGdIv~--I~G--l~~~~~gdTl~~~~~-~~~~~~~~~~--------~Pvv~vaIep~~~~d~~kL~~~-L~~L~~ 437 (701)
+++.+||-++ +.| -++++-||.-++.+| |+. -.-+|. +-.+.+.-.|.-.....++... ++++.+
T Consensus 299 ~~a~PGDNiGFNVrgVs~kdIrRGdV~G~~~NdPP~-v~~~F~A~~vVL~HP~~ItvGYtPV~~~HTA~~AC~F~EL~~K 377 (445)
T TIGR00483 299 EQAEPGDNIGFNVRGVSKKDIRRGDVAGHPDNDPPK-VAKEFTAQIVVLQHPGAITVGYTPVLHAHTAQIACRFVELLKK 377 (445)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 677778741220015560220014303788875872-1014412799972897677356563014311333316888855
Q ss_pred CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCC
Q ss_conf 2742014450457546876066478999999987411133201054101
Q gi|254780264|r 438 EDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVS 486 (701)
Q Consensus 438 ~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V~ 486 (701)
.||.--- +.||+-+.+=+|-- -=+.++=+.|+|.
T Consensus 378 ~d~rtG~-~~Ee~P~FLKtGdA--------------A~VK~~PtkP~vi 411 (445)
T TIGR00483 378 LDPRTGQ-VLEENPQFLKTGDA--------------AIVKLKPTKPMVI 411 (445)
T ss_pred CCCCCCC-CCCCCCCCCCCCCE--------------EEEEEECCCCEEE
T ss_conf 0733585-01478751246763--------------6899618997487
No 53
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.2e-35 Score=244.86 Aligned_cols=290 Identities=24% Similarity=0.302 Sum_probs=172.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCC----------CE-
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996077787----------13-
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGG----------QK- 80 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~----------~~- 80 (701)
=|||+||||||||||+|+|-..+=.-..+| |||=+-.+..+.+...... ..
T Consensus 7 IvtimGHVDhGKTsLLD~iR~t~V~~~EaG------------------GITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ 68 (592)
T PRK04004 7 IVVVLGHVDHGKTTLLDKIRGTAVAAKEAG------------------GITQHIGATEVPIDVIEKIAGPLVKRLPLKLK 68 (592)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC------------------CCCCEECEEEECCCCHHHHCCCCCCCCCCCCC
T ss_conf 899978737776368999862877355577------------------62323065984123101103443344332345
Q ss_pred --EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHC
Q ss_conf --89998179875528999999986045699995588888347999999987399789998176765-875555666411
Q gi|254780264|r 81 --KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM-GADFYRSVEMIS 157 (701)
Q Consensus 81 --~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~-~~d~~~~l~~i~ 157 (701)
-+.|||||||.-|+.==.|+..++|-|||||||.+|++|||...++++...++|+|+.+|||||+ +++..
T Consensus 69 ipgllfiDTPGHeaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~------- 141 (592)
T PRK04004 69 IPGLLFIDTPGHEAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSV------- 141 (592)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-------
T ss_conf 6775576599659999999736745788999997788867627999999997599889998622356667767-------
Q ss_pred CCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11026833000234555665302442234431145222698513874004317889999998863002345789998632
Q gi|254780264|r 158 SRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQ 237 (701)
Q Consensus 158 ~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~ 237 (701)
. +..+ .+..+......++.+-+.+++.-.++.+.-+
T Consensus 142 -------------------------------------~-~~~~-----~~~~~~q~~~v~~~l~~~~~~vi~~l~e~G~- 177 (592)
T PRK04004 142 -------------------------------------E-GAPF-----LESFKKQSERVQAELEEKLYELIGELYELGF- 177 (592)
T ss_pred -------------------------------------C-CCCH-----HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf -------------------------------------6-7411-----2322317388999998888888899987287-
Q ss_pred CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77899889873000003101003234310001221024889898717862130001222245675210112345654201
Q gi|254780264|r 238 GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSML 317 (701)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 317 (701)
.++.. ...+. .+.-+++.-.||.++.|+..||++++...-- +- ...++..+++|..+.
T Consensus 178 ----~~e~~-~~~~d---~g~~v~~VpvSA~tGeGi~dLL~~i~~Laq~------~l--------~~~Lka~~~~~a~Gt 235 (592)
T PRK04004 178 ----SADRF-DRVSD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR------YL--------EEELKIEVEGPGKGT 235 (592)
T ss_pred ----CHHHC-CCCCC---CCCCEEEEECCCCCCCCHHHHHHHHHHHHHH------HH--------HHHHCCCCCCCCCEE
T ss_conf ----63221-45434---5881489978205689989999999999999------99--------985367999986189
Q ss_pred CCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCC--CCEEHHHHHHHC--------CCEEEEEECCC--CCEEEECCC
Q ss_conf 033211654671000011013345683689832655--411104532104--------74454200356--732641387
Q gi|254780264|r 318 AFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGK--KERVGRMLQMHS--------NSREDIDEAYC--GDIIALAGL 385 (701)
Q Consensus 318 v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~--~~kV~~l~~~~g--------~~~~~v~~a~a--GdIv~I~Gl 385 (701)
|.-.-.+..+|..+-+=|+.|||+.||.+...+... ..||..|+...+ .....++++.| |--+...|+
T Consensus 236 ViEsk~dkG~G~vatVIv~~GtLk~GD~IV~g~~~Gpi~tkVRALl~p~pl~E~r~~~~~~~~v~ev~aa~gvki~a~~l 315 (592)
T PRK04004 236 VLEVKEERGLGTTLDVILYDGTLRKGDTIVVGGLDGPIVTKVRALLKPKPLDEMRDPEDKFKPVDEVVAAAGVKISAPGL 315 (592)
T ss_pred EEEEEECCCCCCEEEEEEECCEECCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99998607988617999976847169999995157862000476607876431357788871677225898857963786
Q ss_pred CCCCCCC
Q ss_conf 4443211
Q gi|254780264|r 386 KETTTGD 392 (701)
Q Consensus 386 ~~~~~gd 392 (701)
+++..|+
T Consensus 316 e~~~aG~ 322 (592)
T PRK04004 316 EDVLAGS 322 (592)
T ss_pred CCCCCCC
T ss_conf 6678897
No 54
>KOG0460 consensus
Probab=100.00 E-value=4.7e-36 Score=250.22 Aligned_cols=267 Identities=29% Similarity=0.406 Sum_probs=192.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH---HHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 279998687889778999999---98087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL---YYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL---~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
=||+.|||||||||||+-++- +..|.-. ...--.-|.-|+|+.|||||.++ ++.|+.. ..++--+||
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~-----~~kydeID~APEEkaRGITIn~a--HveYeTa---~RhYaH~DC 124 (449)
T KOG0460 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAK-----FKKYDEIDKAPEEKARGITINAA--HVEYETA---KRHYAHTDC 124 (449)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----CCCHHHHHCCHHHHHCCCEEEEE--EEEEECC---CCCCCCCCC
T ss_conf 5203300335772008999999997516501-----05476653382665356167643--5664224---430014789
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCC-CCCHHHHHHHHCCCCCCCCC
Q ss_conf 98755289999999860456999955888883479999999873997-89998176765-87555566641111026833
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKM-GADFYRSVEMISSRLGANPL 165 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~-~~d~~~~l~~i~~~l~~~~~ 165 (701)
|||.||.-.+..+....|||||||.|.+|.+|||+..+-.|.+-+++ +++||||.|.. ..|.-+.++
T Consensus 125 PGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE----------- 193 (449)
T KOG0460 125 PGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE----------- 193 (449)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH-----------
T ss_conf 963889987532732367349999747898840688888898728764999971202468889999999-----------
Q ss_pred EECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 00023455566530244223443114522269851387400431788999999886300234578999863277899889
Q gi|254780264|r 166 VIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDR 245 (701)
Q Consensus 166 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~ 245 (701)
-+
T Consensus 194 ------------------------------------------------------------------------------mE 195 (449)
T KOG0460 194 ------------------------------------------------------------------------------ME 195 (449)
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------99
Q ss_pred HHHHHCCEEECCEEEECCCCCEECC----------CCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8730000031010032343100012----------210248898987178621300012222456752101123456542
Q gi|254780264|r 246 IRSLIRLGTISVKFFPVLCGSSFKN----------KGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315 (701)
Q Consensus 246 l~~~l~~~~~~~~~~pv~~gsa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 315 (701)
+++++..--..+.-.||.+|||+-- ..+..|||++-.|+|.|. .+-+.||.
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~-------------------R~~~~pFl 256 (449)
T KOG0460 196 IRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE-------------------RDLDKPFL 256 (449)
T ss_pred HHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC-------------------CCCCCCCE
T ss_conf 99999972999887876632012222278842057999999998751589852-------------------13577740
Q ss_pred EECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCC--CCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CCC
Q ss_conf 01033211654671000011013345683689832655--41110453210474454200356732641--3874--443
Q gi|254780264|r 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGK--KERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ETT 389 (701)
Q Consensus 316 ~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~--~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~~ 389 (701)
+-|-.++.-+.+|.++.+|+-.|+|++|+++-..+.++ +..|+.+-.|. ..+++|.|||-|++ .|++ ++.
T Consensus 257 ~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvk 332 (449)
T KOG0460 257 LPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVK 332 (449)
T ss_pred EEHHHEEEECCCCEEEEEEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHH----HHHHHCCCCCCEEHHHHCCCHHHHH
T ss_conf 430024661588349987785022146887898506764046862699998----7777501556201645147787874
Q ss_pred CCCCCCCCCC
Q ss_conf 2110127788
Q gi|254780264|r 390 TGDTLCDPSR 399 (701)
Q Consensus 390 ~gdTl~~~~~ 399 (701)
-|=.++.+..
T Consensus 333 RGmvl~~pGs 342 (449)
T KOG0460 333 RGMVLAKPGS 342 (449)
T ss_pred CCCEEECCCC
T ss_conf 4528736886
No 55
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=241.28 Aligned_cols=264 Identities=21% Similarity=0.327 Sum_probs=178.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEE-C--------------C
Q ss_conf 527999868788977899999998087321422017956137808898708537640799996-0--------------7
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFW-P--------------G 74 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~-~--------------~ 74 (701)
.=||+.+||||||||||+-+|- |. .+|..++|++|||||+..-+.+.. + .
T Consensus 37 ~vNIGtiGHVDHGKTTLvkALT---gv------------~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s 101 (460)
T PTZ00327 37 TINIGTIGHVAHGKSTVVKALS---GV------------KTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPS 101 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHH---CC------------CHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCC
T ss_conf 2189887462898999999986---77------------50106567875872120543301113656776310101466
Q ss_pred CCC-------------CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 778-------------7138999817987552899999998604569999558888-83479999999873997-89998
Q gi|254780264|r 75 RDG-------------GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADKYSVP-RVIFC 139 (701)
Q Consensus 75 ~~~-------------~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~~~lp-~ilvI 139 (701)
... -..++.+||||||-||...+.++....|+|||||+|.||+ |+||+..+..+...+++ +|+|+
T Consensus 102 ~~~~~~~c~~c~~~~t~~Rh~s~VDcPGH~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~ 181 (460)
T PTZ00327 102 SKPDNPQCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 181 (460)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 66555445555654312204899868987999999874763376799999868888764689999999972897199995
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
Q ss_conf 17676587555566641111026833000234555665302442234431145222698513874004317889999998
Q gi|254780264|r 140 NKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDK 219 (701)
Q Consensus 140 NKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (701)
||+|...-+ .
T Consensus 182 nK~DlV~~e-----------------------------------------------------------~----------- 191 (460)
T PTZ00327 182 NKIDLIKEV-----------------------------------------------------------Q----------- 191 (460)
T ss_pred CCCCCCCHH-----------------------------------------------------------H-----------
T ss_conf 354455889-----------------------------------------------------------9-----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCC
Q ss_conf 86300234578999863277899889873000003101003234310001221024889898717862130001222245
Q gi|254780264|r 220 MIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVK 299 (701)
Q Consensus 220 lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~ 299 (701)
+++ .++ ++++.++... ..-.|+.-+||..+.++..|++++.+++|.|..
T Consensus 192 ~~~----~~~---------------ei~~~l~~t~--~~~~PIIpvSA~~~~nid~L~~~i~~~ip~P~R---------- 240 (460)
T PTZ00327 192 ALD----QYE---------------EIRNFIDGTI--AENAPIIPISAQLKYNIDVLLEYICTQIPIPKR---------- 240 (460)
T ss_pred HHH----HHH---------------HHHHHHCCCC--CCCCCEEECCHHHCCCHHHHHHHHHHHCCCCCC----------
T ss_conf 999----999---------------9999852576--779998756544505879999999975899988----------
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCC--------CCCCCEEHHHHHCCCCCCCCEEEEEC----C--CCCCE----EHHHH
Q ss_conf 6752101123456542010332116--------54671000011013345683689832----6--55411----10453
Q gi|254780264|r 300 SNSEIDVSAVDSSPLSMLAFKVMAD--------SFVGSLTFCRIYSGKISKGDSLLNTV----K--GKKER----VGRML 361 (701)
Q Consensus 300 ~~~~~~~~~~~~~pl~~~v~K~~~d--------~~~G~~a~~RV~SGtL~~gd~i~~~~----~--~~~~k----V~~l~ 361 (701)
+-++|+.|.|-..+.= ..+|.++-+||.+|.++.||+|-+.. . +.+.+ .+.+.
T Consensus 241 ---------~~~~~~~m~I~rsFdIngpg~~~~~lrGtVvtGti~~G~lkvGDeIEI~PG~~~~~~~~k~~~~pi~t~I~ 311 (460)
T PTZ00327 241 ---------DLTSPPRMIVIRSFDVNKPGEDIENLRGGVAGGSILQGVLKVGDEVEIRPGIVSKDSGGKFTCSPIRTRIV 311 (460)
T ss_pred ---------CCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCEEEEECCCEEEEEEEEEEEE
T ss_conf ---------88999537487467157898665676545998899881793699899826753241586599999999999
Q ss_pred HHHCCCEEEEEECCCCCEEEECC-CC------CCCCCCCCCCCCC
Q ss_conf 21047445420035673264138-74------4432110127788
Q gi|254780264|r 362 QMHSNSREDIDEAYCGDIIALAG-LK------ETTTGDTLCDPSR 399 (701)
Q Consensus 362 ~~~g~~~~~v~~a~aGdIv~I~G-l~------~~~~gdTl~~~~~ 399 (701)
.++. ....++++.||..+++.- |+ +...|..++.+..
T Consensus 312 sl~~-~~~~l~~a~pGGligiGT~Ldp~ltr~D~l~GqVlgkPGs 355 (460)
T PTZ00327 312 SLKA-EQNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGEPGQ 355 (460)
T ss_pred EEEE-CCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 8872-5852421256753653220146621131014677866997
No 56
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=3.2e-35 Score=244.88 Aligned_cols=132 Identities=30% Similarity=0.419 Sum_probs=113.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC--CCEEC-----CC------CEECCCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 7999868788977899999998087321--42201-----79------56137808898708537640799996077787
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHK--IGEVH-----DG------SATMDWMEQEQERGITITSASTTVFWPGRDGG 78 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~--~g~v~-----~g------~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~ 78 (701)
.++++||||||||||+++||+.+|.+.. ..++. .+ .-.||.+++||||||||..+...|.++
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEEC-----
T ss_conf 969997488988899999999829967899999998875416763000343468687882697941058999819-----
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCC
Q ss_conf 138999817987552899999998604569999558888834799999998739978999-8176765875
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGAD 148 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d 148 (701)
.+.+++||||||.||..++.++++.+|+|||||||.+|+++||+..+..+...+++.++| |||||....+
T Consensus 76 ~~~~~iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~ 146 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 92699987896288999999998637747999975888727899999999974998399999885768999
No 57
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-35 Score=245.93 Aligned_cols=270 Identities=27% Similarity=0.381 Sum_probs=190.0
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-EECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 0252799986878897789999999808732142-201795613780889870853764079999607778713899981
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIG-EVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g-~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlID 86 (701)
.--=||+.|||||||||||+-+|-. ...+.| .....-..-|..|+|++|||||.++-+-.... +.++-.+|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~---~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~-----~rhyahVD 81 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITT---VLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA-----NRHYAHVD 81 (394)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH---HHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECC-----CCEEEECC
T ss_conf 8714787861424763528999999---998632401033344304826764572540100588638-----81488616
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-CCHHHHHH-HHCCCCCCC
Q ss_conf 798755289999999860456999955888883479999999873997-899981767658-75555666-411110268
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKMG-ADFYRSVE-MISSRLGAN 163 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~~-~d~~~~l~-~i~~~l~~~ 163 (701)
||||.|+.-.+..+....|||||||.|.+|.||||+..+-.+.+-++| +++|+||.|... .|+-+.++ ++++.
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL---- 157 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL---- 157 (394)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH----
T ss_conf 8974899998764077537628999847899986056420123428857999974223668689999999999999----
Q ss_pred CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33000234555665302442234431145222698513874004317889999998863002345789998632778998
Q gi|254780264|r 164 PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSS 243 (701)
Q Consensus 164 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~ 243 (701)
T Consensus 158 -------------------------------------------------------------------------------- 157 (394)
T COG0050 158 -------------------------------------------------------------------------------- 157 (394)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCEEECCEEEECCCCCEECC--------CCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 898730000031010032343100012--------210248898987178621300012222456752101123456542
Q gi|254780264|r 244 DRIRSLIRLGTISVKFFPVLCGSSFKN--------KGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315 (701)
Q Consensus 244 ~~l~~~l~~~~~~~~~~pv~~gsa~~~--------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 315 (701)
+..--..+.-.|+..|||++- .-+.+|||++-+|+|.|. .+.+.||.
T Consensus 158 ------Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe-------------------r~~dkPfl 212 (394)
T COG0050 158 ------LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE-------------------RDIDKPFL 212 (394)
T ss_pred ------HHHCCCCCCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC-------------------CCCCCCCC
T ss_conf ------99739998776334112333103772167899999999985489998-------------------65566520
Q ss_pred EECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCC--CCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCC--CCCC
Q ss_conf 0103321165467100001101334568368983265--541110453210474454200356732641--387--4443
Q gi|254780264|r 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKG--KKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGL--KETT 389 (701)
Q Consensus 316 ~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl--~~~~ 389 (701)
|-|-.++.-+.+|..+++||-.|+|+.|+.+...+.. ++..++.+-.+ +...++..|||-|++ .|. +++.
T Consensus 213 mpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~aGdnvg~llRg~~r~~ve 288 (394)
T COG0050 213 MPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVE 288 (394)
T ss_pred CCCEEEEEECCCEEEEEEEEEEEEECCCCEEEEECCCCCCEEEEEHHHHH----HHHHHCCCCCCCCCEEEEECCCCCEE
T ss_conf 10100689757516898788401241587799725645530488769999----98874046689852689721113353
Q ss_pred CCCCCCCCC
Q ss_conf 211012778
Q gi|254780264|r 390 TGDTLCDPS 398 (701)
Q Consensus 390 ~gdTl~~~~ 398 (701)
-|..|+.+.
T Consensus 289 RGqvLakpg 297 (394)
T COG0050 289 RGQVLAKPG 297 (394)
T ss_pred CCEEECCCC
T ss_conf 120760688
No 58
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.4e-34 Score=237.60 Aligned_cols=249 Identities=27% Similarity=0.351 Sum_probs=187.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|.|.||||||||||+|.|-.. +|.+|. .-|||=.-.+....+++ +..|+|||||||.
T Consensus 343 vvt~mghvdhgkt~lld~~r~~--------~v~~~e----------~ggitq~iga~~v~~~~----~~~itf~dtpgh~ 400 (839)
T PRK05306 343 VVTIMGHVDHGKTSLLDAIRKT--------KVAAGE----------AGGITQHIGAYQVETEN----GKKITFLDTPGHE 400 (839)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--------CCCCCC----------CCCCCCEEEEEEEEECC----CCEEEEECCCCHH
T ss_conf 8988577467731489998628--------753556----------78755222349999569----9879985588558
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
-|+.==.|+..+.|-+||||.|.+||+|||...+.++...++|+|+.|||||++.++.+.+.+++..+ ...+
T Consensus 401 af~~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~---~~~~----- 472 (839)
T PRK05306 401 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEY---GLVP----- 472 (839)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC---CCCH-----
T ss_conf 89999863576543699999777775677899999999749988999740467889889999999984---9864-----
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
+.||-.
T Consensus 473 ----------------------e~~gg~---------------------------------------------------- 478 (839)
T PRK05306 473 ----------------------EEWGGD---------------------------------------------------- 478 (839)
T ss_pred ----------------------HHCCCC----------------------------------------------------
T ss_conf ----------------------542894----------------------------------------------------
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEE
Q ss_conf 00310100323431000122102488989871786213000122224567521011234565420103321165467100
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a 331 (701)
+++...||+++.|++.||++|.-.. ...++++.+++|..+.|.-...|..+|.++
T Consensus 479 --------~~~v~~sa~~~~~~~~l~e~i~l~a-----------------e~~~l~a~~~~~a~g~vie~~~~~~~g~v~ 533 (839)
T PRK05306 479 --------TIFVPVSAKTGEGIDELLEAILLQA-----------------EVLELKANPDRPARGVVIEAKLDKGRGPVA 533 (839)
T ss_pred --------EEEEEEEECCCCCHHHHHHHHHHHH-----------------HHHCCCCCCCCCEEEEEEEEEECCCCCCEE
T ss_conf --------4899815157887899999999876-----------------652044799986179999877527875058
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCC-CCCCCC
Q ss_conf 001101334568368983265541110453210474454200356732641387444-321101
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKET-TTGDTL 394 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~-~~gdTl 394 (701)
.+=|-.|||+.||.+.-.... -||..++ -..-..+.+|.++.-|-|.|++.+ ..||.+
T Consensus 534 t~lv~~gtl~~gd~~v~g~~~--g~vr~m~---~~~g~~~~~a~Ps~pv~i~G~~~~P~aGd~~ 592 (839)
T PRK05306 534 TVLVQNGTLKVGDIVVAGTTY--GRVRAMV---DDNGKRVKEAGPSTPVEILGLSGVPQAGDEF 592 (839)
T ss_pred EEEEECCEECCCCEEEEECCC--CCCEEEE---CCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 999842713259989981020--5510158---8999898714898777960567899888877
No 59
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=4.5e-35 Score=243.96 Aligned_cols=119 Identities=25% Similarity=0.375 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEE--------------CCCC-
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996--------------0777-
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFW--------------PGRD- 76 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~--------------~~~~- 76 (701)
||||+||||||||||+++|. | .++|..+.|++||||++.+.....+ ....
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~---g------------~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKED 66 (203)
T ss_pred EEEEEEEECCCHHHHHHHHH---C------------CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCC
T ss_conf 69999885787999999970---8------------51244078886776031114566665111212231011110124
Q ss_pred -------------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEECC
Q ss_conf -------------87138999817987552899999998604569999558888-83479999999873997-8999817
Q gi|254780264|r 77 -------------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADKYSVP-RVIFCNK 141 (701)
Q Consensus 77 -------------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~~~lp-~ilvINK 141 (701)
.-.+.|||||||||.||..+|.++...+|+|||||||.+|+ ++||+..+..+...+++ +|++|||
T Consensus 67 ~~~~~~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNK 146 (203)
T cd01888 67 SPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNK 146 (203)
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 42145314565431124799986898799999999766434766898643667750779999999998499863677507
Q ss_pred CCCC
Q ss_conf 6765
Q gi|254780264|r 142 MDKM 145 (701)
Q Consensus 142 iDr~ 145 (701)
||..
T Consensus 147 mDlv 150 (203)
T cd01888 147 IDLV 150 (203)
T ss_pred CCCC
T ss_conf 7778
No 60
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.7e-31 Score=218.11 Aligned_cols=246 Identities=29% Similarity=0.356 Sum_probs=177.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|+|.||||||||||+|.+=. ++|..|.. =|||=+-.++...+..- +.-.|.|||||||.
T Consensus 7 vVtimGHVDHGKTtLLD~IR~--------t~Va~~Ea----------GGITQhIGA~~v~~~~~--~~~~itFiDTPGHe 66 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRK--------TNVAAGEA----------GGITQHIGAYQVPLDVI--KIPGITFIDTPGHE 66 (509)
T ss_pred EEEEECCCCCCCCCHHHHHHC--------CCCCCCCC----------CCEEEEEEEEEEEECCC--CCCEEEEECCCCHH
T ss_conf 899967435884201666741--------76435667----------85001743499986468--86528997489578
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
-|+.==.|+-.++|-||||||+.+|++|||...+.++...++|+++.+|||||+.+++.....++++.
T Consensus 67 AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~------------ 134 (509)
T COG0532 67 AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY------------ 134 (509)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC------------
T ss_conf 88878755775445799999756785661799999998779998999854327998878999988777------------
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
|+ .+|..
T Consensus 135 -------gl-------------------------------------------------------------~~E~~----- 141 (509)
T COG0532 135 -------GL-------------------------------------------------------------VPEEW----- 141 (509)
T ss_pred -------CC-------------------------------------------------------------CHHHC-----
T ss_conf -------98-------------------------------------------------------------87661-----
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEE
Q ss_conf 00310100323431000122102488989871786213000122224567521011234565420103321165467100
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a 331 (701)
...-.++|+ ||.++.|+..||+++.-.. +. .+.+..+++|..+.|.-...+..+|.++
T Consensus 142 --gg~v~~Vpv---SA~tg~Gi~eLL~~ill~a------ev-----------~elka~~~~~a~gtviE~~~dkG~G~va 199 (509)
T COG0532 142 --GGDVIFVPV---SAKTGEGIDELLELILLLA------EV-----------LELKANPEGPARGTVIEVKLDKGLGPVA 199 (509)
T ss_pred --CCCEEEEEE---ECCCCCCHHHHHHHHHHHH------HH-----------HHHHCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf --881499974---3247879799999999888------99-----------8644288987249999998626887528
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCC
Q ss_conf 0011013345683689832655411104532104744542003567326413874443
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETT 389 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~ 389 (701)
-+=|+.|||+.||.+....... +|. .|.-....+++++.++-=+-+.|++...
T Consensus 200 tviv~~GtL~~GD~iv~g~~~g--~I~---t~v~~~~~~i~~a~ps~~v~i~g~~evp 252 (509)
T COG0532 200 TVIVQDGTLKKGDIIVAGGEYG--RVR---TMVDDLGKPIKEAGPSKPVEILGLSEVP 252 (509)
T ss_pred EEEEECCEEECCCEEEECCCCC--CEE---EEEHHCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 9999648474499999837877--369---8554209895214798776985003666
No 61
>KOG0458 consensus
Probab=99.97 E-value=4.2e-30 Score=212.05 Aligned_cols=273 Identities=26% Similarity=0.337 Sum_probs=190.9
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 2527999868788977899999998087321------------42201-7956137808898708537640799996077
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHK------------IGEVH-DGSATMDWMEQEQERGITITSASTTVFWPGR 75 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~------------~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~ 75 (701)
.-=|..++||||+||+||..+|||.-|.|+. .|+-. .-.-.+|..++|||||+||......|+-
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes--- 252 (603)
T KOG0458 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES--- 252 (603)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEEC---
T ss_conf 61589997023454111023788873686578899999998752875302567743631245436367754689846---
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEECCCCCCCC
Q ss_conf 787138999817987552899999998604569999558888-------83479999999873997-8999817676587
Q gi|254780264|r 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-------EPQTETVWRQADKYSVP-RVIFCNKMDKMGA 147 (701)
Q Consensus 76 ~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-------~~qT~~vlr~~~~~~lp-~ilvINKiDr~~~ 147 (701)
+.+.+.|||+|||-||..++.++...+|.|||||||.-|. --||+.....+...|+. .|+.|||||-...
T Consensus 253 --~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458 253 --KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred --CCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf --861699860787423552343362215668999987754333134879865899999987495258888630101275
Q ss_pred CHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55556664111102683300023455566530244223443114522269851387400431788999999886300234
Q gi|254780264|r 148 DFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVEL 227 (701)
Q Consensus 148 d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~ 227 (701)
+ +.-.++|.+.++.- +... .|| .+
T Consensus 331 s-q~RF~eIk~~l~~f--L~~~--------~gf-----------~e---------------------------------- 354 (603)
T KOG0458 331 S-QDRFEEIKNKLSSF--LKES--------CGF-----------KE---------------------------------- 354 (603)
T ss_pred C-HHHHHHHHHHHHHH--HHHH--------CCC-----------CC----------------------------------
T ss_conf 3-88999999989999--9985--------285-----------04----------------------------------
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCH---------------HHHHHHHHHHCCCHHHEEC
Q ss_conf 5789998632778998898730000031010032343100012210---------------2488989871786213000
Q gi|254780264|r 228 DDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGV---------------QPLLDAVVDYLPSPLDVRA 292 (701)
Q Consensus 228 dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv---------------~~LLd~i~~~lPsP~~~~~ 292 (701)
.+.+|+|+ |++.|.+. ..||+.|-. +-.|.
T Consensus 355 ---------------------------s~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~---- 399 (603)
T KOG0458 355 ---------------------------SSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPE---- 399 (603)
T ss_pred ---------------------------CCCCEEEC---CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCC----
T ss_conf ---------------------------77656955---46567762123341355665338808888861-36888----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEE
Q ss_conf 12222456752101123456542010332116546710000110133456836898326554111045321047445420
Q gi|254780264|r 293 IKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDID 372 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~ 372 (701)
+. -+.||.+-|..+...+..|....|||.||.|.+||+||+........|..+-. .-.+..
T Consensus 400 --------------~~-~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~----~~~~~~ 460 (603)
T KOG0458 400 --------------RP-IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTS----NDEPKT 460 (603)
T ss_pred --------------CC-CCCCEEEEHHHEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEC----CCCCCE
T ss_conf --------------76-66774878300543588706899997214213599899835753079985543----898621
Q ss_pred ECCCCCEEEE--CCCC--CCCCCCCCCC
Q ss_conf 0356732641--3874--4432110127
Q gi|254780264|r 373 EAYCGDIIAL--AGLK--ETTTGDTLCD 396 (701)
Q Consensus 373 ~a~aGdIv~I--~Gl~--~~~~gdTl~~ 396 (701)
.+.|||-|.+ .|++ .+..|+++++
T Consensus 461 ~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458 461 WAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred EEEECCEEEEECCCCCHHHCCCCEEEEC
T ss_conf 5761778998537657645355204522
No 62
>KOG1145 consensus
Probab=99.97 E-value=2.4e-30 Score=213.54 Aligned_cols=248 Identities=30% Similarity=0.427 Sum_probs=188.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|.|.||||||||||+|+|=.. +|..+.. -|||=.-.+.+...+ ++..|+|+|||||.
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks--------~VAA~E~----------GGITQhIGAF~V~~p----~G~~iTFLDTPGHa 212 (683)
T KOG1145 155 VVTIMGHVDHGKTTLLDALRKS--------SVAAGEA----------GGITQHIGAFTVTLP----SGKSITFLDTPGHA 212 (683)
T ss_pred EEEEEECCCCCHHHHHHHHHHC--------CEEHHHC----------CCCCCEECEEEEECC----CCCEEEEECCCCHH
T ss_conf 6998601357700199887407--------2201323----------771000022999638----99778875687478
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 52899999998604569999558888834799999998739978999817676587555566641111026833000234
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPV 171 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~ 171 (701)
-|+.==.|+.+++|-++|||.|..||++||...+.+|...++|+|+.|||||+++++...+..++.+.
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~------------ 280 (683)
T KOG1145 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ------------ 280 (683)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC------------
T ss_conf 89999862686444799999726775676899999887659978999843678998989999999876------------
Q ss_pred CCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 55566530244223443114522269851387400431788999999886300234578999863277899889873000
Q gi|254780264|r 172 GSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIR 251 (701)
Q Consensus 172 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~ 251 (701)
|+. -+++| |
T Consensus 281 -------gi~-----------~E~~G----------------------------------------G------------- 289 (683)
T KOG1145 281 -------GIV-----------VEDLG----------------------------------------G------------- 289 (683)
T ss_pred -------CCC-----------HHHCC----------------------------------------C-------------
T ss_conf -------932-----------77707----------------------------------------8-------------
Q ss_pred CEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEE
Q ss_conf 00310100323431000122102488989871786213000122224567521011234565420103321165467100
Q gi|254780264|r 252 LGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 (701)
Q Consensus 252 ~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a 331 (701)
..+.+|+ ||+++.++..|.+++.-.. ...++++++.+|.-+.|.-...|..+|.++
T Consensus 290 ----dVQvipi---SAl~g~nl~~L~eaill~A-----------------e~mdLkA~p~g~~eg~VIES~vdkg~G~~a 345 (683)
T KOG1145 290 ----DVQVIPI---SALTGENLDLLEEAILLLA-----------------EVMDLKADPKGPAEGWVIESSVDKGRGPVA 345 (683)
T ss_pred ----CEEEEEE---ECCCCCCHHHHHHHHHHHH-----------------HHHHCCCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf ----2369986---5114798689999999999-----------------986411688997128999864137756426
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCC-CCCCC
Q ss_conf 001101334568368983265541110453210474454200356732641387444-32110
Q gi|254780264|r 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKET-TTGDT 393 (701)
Q Consensus 332 ~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~-~~gdT 393 (701)
.+=|-.|||++|+.|.-... --||..++=..| .++++|+++.-+-|.|.++. ..||-
T Consensus 346 T~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~ 403 (683)
T KOG1145 346 TVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDE 403 (683)
T ss_pred EEEEECCCCCCCCEEEEECH--HHHHHHHHHCCC---CCCCCCCCCCCEEEECCCCCCCCCCE
T ss_conf 99995362315658997021--443344552379---79221489983476424679988754
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.97 E-value=2.1e-30 Score=214.00 Aligned_cols=115 Identities=28% Similarity=0.424 Sum_probs=104.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|||+||+|||||||.++|. |. .+|..+.|++||||+..+..++.+++ +..++|||||||-+
T Consensus 3 VaivG~~n~GKSTL~n~L~---g~------------~~d~~~~e~~~giTi~~~~~~~~~~~----~~~i~~iDtPGh~~ 63 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALT---GI------------ETDRLPEEKKRGITIDLGFAYLDLPS----GKRLGFIDVPGHEK 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHH---CC------------CCCCCHHHHCCCEEEEEEEEEEECCC----CCEEEEEECCCHHH
T ss_conf 9999268872999999984---96------------46633333348637985468786489----98999994878799
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC
Q ss_conf 289999999860456999955888883479999999873997-899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~~ 146 (701)
|..++.+++..+|.|++||||.+|+++||+..|+.+...++| +|+++||||+..
T Consensus 64 ~~~~~~~~~~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9999999874267258998617788888999999998738872787346342579
No 64
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.4e-30 Score=213.53 Aligned_cols=251 Identities=24% Similarity=0.355 Sum_probs=189.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|+..||+|||||||+..+- | ..+|.+++|++|||||...-..+.. +++.+.|||.|||.
T Consensus 2 ii~t~GhidHgkT~L~~alt---g------------~~~d~l~EekKRG~TiDlg~~y~~~-----~d~~~~fIDvpgh~ 61 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G------------GVTDRLPEEKKRGITIDLGFYYRKL-----EDGVMGFIDVPGHP 61 (447)
T ss_pred EEEEEEEEECCCHHHHHHHC---C------------CCCCCCHHHHHCCCEEEEEEEECCC-----CCCCEEEEECCCCH
T ss_conf 69974002014302233302---5------------5332054566158468420573257-----77736886189847
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 52899999998604569999558888834799999998739978-99981767658755556664111102683300023
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPR-VIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLP 170 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~-ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p 170 (701)
||...+.+++...|.|++|||+.||+++||...+..+...+++. ++++||+||....
T Consensus 62 ~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~---------------------- 119 (447)
T COG3276 62 DFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA---------------------- 119 (447)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----------------------
T ss_conf 8899998540577458999847557664368899999861987328999622344678----------------------
Q ss_pred CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 45556653024422344311452226985138740043178899999988630023457899986327789988987300
Q gi|254780264|r 171 VGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 (701)
Q Consensus 171 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l 250 (701)
......+.++....
T Consensus 120 -----------------------------------------r~e~~i~~Il~~l~------------------------- 133 (447)
T COG3276 120 -----------------------------------------RIEQKIKQILADLS------------------------- 133 (447)
T ss_pred -----------------------------------------HHHHHHHHHHHHCC-------------------------
T ss_conf -----------------------------------------89999999986502-------------------------
Q ss_pred CCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCE
Q ss_conf 00031010032343100012210248898987178621300012222456752101123456542010332116546710
Q gi|254780264|r 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSL 330 (701)
Q Consensus 251 ~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~ 330 (701)
.. -.|++-.|+.++.|+..|=+.+.+.+- + ...+.++|+.++|=..+.-...|.+
T Consensus 134 ---l~---~~~i~~~s~~~g~Gi~~Lk~~l~~L~~-~------------------~e~d~~~~fri~IDraFtVKGvGTV 188 (447)
T COG3276 134 ---LA---NAKIFKTSAKTGRGIEELKNELIDLLE-E------------------IERDEQKPFRIAIDRAFTVKGVGTV 188 (447)
T ss_pred ---CC---CCCCCCCCCCCCCCHHHHHHHHHHHHH-H------------------HHHCCCCCEEEEEEEEEEECCCCEE
T ss_conf ---00---032301101257877999999987520-0------------------5540478659997557995133179
Q ss_pred EHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEEC--CC--CCCCCCCCCCCCCC
Q ss_conf 00011013345683689832655411104532104744542003567326413--87--44432110127788
Q gi|254780264|r 331 TFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALA--GL--KETTTGDTLCDPSR 399 (701)
Q Consensus 331 a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~--Gl--~~~~~gdTl~~~~~ 399 (701)
..|-++||+++.||+++.+..++..+|.++... -.++++|+||+-||+. |. +++.-|+.|.+++.
T Consensus 189 VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~----d~d~~~a~AG~RVglaL~~v~~eei~RG~~L~~~~~ 257 (447)
T COG3276 189 VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAH----DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP 257 (447)
T ss_pred EEEEEEEEEEEECCEEEEECCCCEEEEEEEEEC----CCCHHHCCCCCEEEEECCCCCHHHHHCCCEECCCCC
T ss_conf 986786435887888999058976899863206----864555012251454237887788511227515777
No 65
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=99.97 E-value=5.2e-30 Score=211.45 Aligned_cols=273 Identities=27% Similarity=0.407 Sum_probs=195.2
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 252799986878897789999999808732142201-7956137808898708537640799996077787138999817
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH-DGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
.-=||+.|||+|||||||+-++-..- .+.+.-. ..-...|..|+|++|||||.++.+- |.. ...++.-+||
T Consensus 11 ~h~n~GtiGhvdhGkttl~aa~~~~l---~~~~~~~~~~y~~id~aPee~~rGiti~~~~ve--y~~---~~rhyahvdC 82 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVL---AKEGKAAAKKYDEIDKAPEEKARGITINTAHVE--YET---EKRHYAHVDC 82 (394)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEE--ECC---CCCCEEEECC
T ss_conf 70333012100155057899999998---751003567677652372113345156533554--214---6751576318
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 98755289999999860456999955888883479999999873997-89998176765875555666411110268330
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKMGADFYRSVEMISSRLGANPLV 166 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~ 166 (701)
|||.||.-.+..+....|||||||.+.+|.+|||+..+-.+.+-++| +++|+||.|....+ +
T Consensus 83 PGhadyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~--e--------------- 145 (394)
T TIGR00485 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDE--E--------------- 145 (394)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHH--H---------------
T ss_conf 86267888764101111760799952788887411210010026876578764023322427--8---------------
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
+++.+ ..++
T Consensus 146 -----------------------------------------------------l~~lv------------------~~e~ 154 (394)
T TIGR00485 146 -----------------------------------------------------LLELV------------------ELEV 154 (394)
T ss_pred -----------------------------------------------------HHHHH------------------HHHH
T ss_conf -----------------------------------------------------99999------------------9999
Q ss_pred HHHHCCEEECCEEEECCCCCEECCC--------CHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 7300000310100323431000122--------10248898987178621300012222456752101123456542010
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFKNK--------GVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLA 318 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~~~--------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v 318 (701)
++++......++-.|+..|||++.. -+..|++.+-+|+|.|.. .-+.|+.+-+
T Consensus 155 ~~ll~~~~f~G~~~Pi~~Gsal~al~~~~~~~~~~~~l~~~vd~~i~~P~r-------------------~~~~~fl~~~ 215 (394)
T TIGR00485 155 RELLSEYDFPGDDVPIVRGSALKALEGDAEWEEKILELMEAVDEYIPTPER-------------------EVDKPFLLPI 215 (394)
T ss_pred HHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------------------HHCCCEEEEE
T ss_conf 999874078986522561145654200367999999999999865067511-------------------3144114553
Q ss_pred CCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCC--CCCEEHHHHHHHCCCEEEEEECCCCCEEE--ECCCC--CCCCCC
Q ss_conf 3321165467100001101334568368983265--54111045321047445420035673264--13874--443211
Q gi|254780264|r 319 FKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKG--KKERVGRMLQMHSNSREDIDEAYCGDIIA--LAGLK--ETTTGD 392 (701)
Q Consensus 319 ~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~--I~Gl~--~~~~gd 392 (701)
-.++.-..+|.++.+||-.|.++.|+.+...+-. ++..++.+-.+. ..++++.||+-++ +.|++ ++..|.
T Consensus 216 ed~~~i~GrGtv~tGr~e~G~~~v~~~v~~~G~~~~~~~~vtGvemf~----k~l~~~~aG~n~G~llrG~~~~~~~rG~ 291 (394)
T TIGR00485 216 EDVFSITGRGTVVTGRVERGVVKVGEEVEIVGLKDTKKTTVTGVEMFR----KELDEGEAGDNVGLLLRGIKKEEIERGM 291 (394)
T ss_pred EEEEEEECCCEEEEEEEEECEEEECCEEEEEEEECCCCEEEHHHHHHH----HHHHCCCCCCCEEEEEECCCHHHCCCCE
T ss_conf 104675046347850243044764464799874024540221478888----8741133554201011045312101563
Q ss_pred CCCCCCCC
Q ss_conf 01277884
Q gi|254780264|r 393 TLCDPSRP 400 (701)
Q Consensus 393 Tl~~~~~~ 400 (701)
.++.|...
T Consensus 292 v~~~P~~~ 299 (394)
T TIGR00485 292 VLAKPGSI 299 (394)
T ss_pred EEECCCCC
T ss_conf 78437632
No 66
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.96 E-value=1.1e-28 Score=202.88 Aligned_cols=116 Identities=59% Similarity=0.991 Sum_probs=114.4
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 10144421035543211589875302789997028888647981200267002433325677899999718822550331
Q gi|254780264|r 487 YRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLG 566 (701)
Q Consensus 487 yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~g 566 (701)
|||||+.++..+++|+||+||.+||++|.+.+||+++|.++.|++++.++.+|++|+++|++||+.++.+|||+|+|+.|
T Consensus 1 YRETI~~~~~~~~~~~kq~GG~gqfa~V~l~ieP~~~g~g~~F~~~i~gg~iP~e~i~avekGv~ea~~~G~l~G~pv~d 80 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVD 80 (116)
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 96566664689899976159997325999999988899974898632699699999999999999998268744752789
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 289999511168767603379999999999998489
Q gi|254780264|r 567 MKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 (701)
Q Consensus 567 v~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 602 (701)
|+|+|.|+.+|.+||++++|++|++.|+|+|+.+|.
T Consensus 81 vkv~L~dG~~H~vdSse~AF~~Aa~~AfreA~~~A~ 116 (116)
T cd01434 81 VKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999997155123878888999999999999999767
No 67
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.2e-28 Score=198.56 Aligned_cols=345 Identities=25% Similarity=0.340 Sum_probs=209.8
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCC-----C----------CEECCCCEECCCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 2527999868788977899999998087321-----4----------220179561378088987085376407999960
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHK-----I----------GEVHDGSATMDWMEQEQERGITITSASTTVFWP 73 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~-----~----------g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~ 73 (701)
..-+++.+||||+||+||+.+|||-+..+.. . |+.-+-.-.+|-++.|||.||||..+---|..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC-
T ss_conf 4136897535368602324465531011057799987521312367787545256332568888649659987641036-
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHHH
Q ss_conf 77787138999817987552899999998604569999558888834799999998739978999-81767658755556
Q gi|254780264|r 74 GRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGADFYRS 152 (701)
Q Consensus 74 ~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~~~~ 152 (701)
...+|-+.|||||..|.-.|..+.+-||.||++|||-+|+..||++.--.+...+++.+++ +||||-...+ +..
T Consensus 84 ----~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~ 158 (431)
T COG2895 84 ----EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEV 158 (431)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC-HHH
T ss_conf ----663089845996798764222362300379999964221677767789999972876799997410123567-899
Q ss_pred HHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66411110268330002345556653024422344311452226985138740043178899999988630023457899
Q gi|254780264|r 153 VEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAM 232 (701)
Q Consensus 153 l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~ 232 (701)
.++|...+. .+.
T Consensus 159 F~~I~~dy~--------------------------------------------------------------------~fa 170 (431)
T COG2895 159 FEAIVADYL--------------------------------------------------------------------AFA 170 (431)
T ss_pred HHHHHHHHH--------------------------------------------------------------------HHH
T ss_conf 999999999--------------------------------------------------------------------999
Q ss_pred HHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCH------------HHHHHHHHHHCCCHHHEECCCCCCCCC
Q ss_conf 98632778998898730000031010032343100012210------------248898987178621300012222456
Q gi|254780264|r 233 DSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGV------------QPLLDAVVDYLPSPLDVRAIKGVDVKS 300 (701)
Q Consensus 233 ~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv------------~~LLd~i~~~lPsP~~~~~~~~~~~~~ 300 (701)
+ +.+.....++|+ ||+.+..+ .+||+.+-. +. .
T Consensus 171 ~-----------------~L~~~~~~~IPi---SAl~GDNV~~~s~~mpWY~GptLLe~LE~-v~------------i-- 215 (431)
T COG2895 171 A-----------------QLGLKDVRFIPI---SALLGDNVVSKSENMPWYKGPTLLEILET-VE------------I-- 215 (431)
T ss_pred H-----------------HCCCCCCEEEEC---HHHCCCCCCCCCCCCCCCCCCCHHHHHHH-CC------------C--
T ss_conf 9-----------------769985247743---23048753346567886468509999741-22------------3--
Q ss_pred CCCCCCCCCCCCCCCEECCCC--CCCCCCCCEEH-HHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCC
Q ss_conf 752101123456542010332--11654671000-011013345683689832655411104532104744542003567
Q gi|254780264|r 301 NSEIDVSAVDSSPLSMLAFKV--MADSFVGSLTF-CRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCG 377 (701)
Q Consensus 301 ~~~~~~~~~~~~pl~~~v~K~--~~d~~~G~~a~-~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aG 377 (701)
.......|+..-|--+ ....|+| | ++|-||++++||++.....|+..+|.++..+.| +.++|.||
T Consensus 216 -----~~~~~~~~~RfPVQ~V~Rp~~dfRG---yaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG 283 (431)
T COG2895 216 -----ADDRSAKAFRFPVQYVNRPNLDFRG---YAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAG 283 (431)
T ss_pred -----CCCCCCCCEEECEEEECCCCCCCCC---CCEEEECCCEECCCEEEECCCCCEEEEEEEECCCC----CHHHCCCC
T ss_conf -----4554366501022886178976210---03044035140597489945897035799964687----16541688
Q ss_pred CEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf 326413874--443211012778841015663665213577761564322025788885410274201445045754687
Q gi|254780264|r 378 DIIALAGLK--ETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNL 455 (701)
Q Consensus 378 dIv~I~Gl~--~~~~gdTl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il 455 (701)
+-|.+.=-+ ++.-||.|+....++. ..-+|..-++-+.=+|..|...=.|.-+=++..-.=..++-..|-.|.+..
T Consensus 284 ~aVtl~L~deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~- 361 (431)
T COG2895 284 EAVTLVLADEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE- 361 (431)
T ss_pred CEEEEEECCEEECCCCCEEECCCCCCC-HHHHCCEEEEEECCCCCCCCCEEEEEECCEEEEEEEEEEEEEEECCCCCCC-
T ss_conf 428999800020025737870689855-223216069984377778884688884124778986112789843500100-
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCEECCCC
Q ss_conf 60664789999999874111332010541
Q gi|254780264|r 456 SGMGELHLEIIVDRMLREFKVDANVGAPY 484 (701)
Q Consensus 456 ~g~GElhLev~l~~L~~~f~iei~vs~P~ 484 (701)
+.-.|. |.+--.+.+.+.+|.
T Consensus 362 -~a~~l~-------lN~Ig~v~i~~~~pi 382 (431)
T COG2895 362 -GAESLP-------LNEIGRVRISFDKPI 382 (431)
T ss_pred -CCCCCC-------CCCCEEEEEECCCCE
T ss_conf -000147-------776359999637855
No 68
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=99.96 E-value=1.8e-28 Score=201.58 Aligned_cols=350 Identities=26% Similarity=0.359 Sum_probs=228.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC------------C---CEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCC
Q ss_conf 999868788977899999998087321------------4---2201795613780889870853764079999607778
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHK------------I---GEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDG 77 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~------------~---g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~ 77 (701)
++.+|.||-||+||+.|||+-|+.|.. - |+-=+-.-.+|-++-|||.||||..+ |.+...
T Consensus 3 flTCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVA-----YRYFsT 77 (411)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVA-----YRYFST 77 (411)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-----ECCCCC
T ss_conf 352054458731022222555521689999998852255347887652341330677443248612133-----132577
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHHHHHHH
Q ss_conf 7138999817987552899999998604569999558888834799999998739978999-817676587555566641
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGADFYRSVEMI 156 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~~~~l~~i 156 (701)
.-.+|=+=|||||.-+.=.|..+.+-||-|||+|||-.||..||++.--.+--.|++.+++ |||||--..+ +.+.+.|
T Consensus 78 ~KRkFIvADTPGHEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd-~~vF~~I 156 (411)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENI 156 (411)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-HHHHHHH
T ss_conf 876178840855941544300001311246655421021345677999998860453899999701114765-7889999
Q ss_pred CCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11102683300023455566530244223443114522269851387400431788999999886300234578999863
Q gi|254780264|r 157 SSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYL 236 (701)
Q Consensus 157 ~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l 236 (701)
.+. |. .+
T Consensus 157 ~~~--------------------------------------------------------y~------------~f----- 163 (411)
T TIGR02034 157 KKD--------------------------------------------------------YL------------AF----- 163 (411)
T ss_pred HHH--------------------------------------------------------HH------------HH-----
T ss_conf 999--------------------------------------------------------99------------99-----
Q ss_pred CCCCCCHHHHHHHHCC-EEECCEEEECCCCCEECCCCHH-HHHHHHHHHCCCHHHEEC-CCCCCCCCCCCC-CCC--CCC
Q ss_conf 2778998898730000-0310100323431000122102-488989871786213000-122224567521-011--234
Q gi|254780264|r 237 QGESFSSDRIRSLIRL-GTISVKFFPVLCGSSFKNKGVQ-PLLDAVVDYLPSPLDVRA-IKGVDVKSNSEI-DVS--AVD 310 (701)
Q Consensus 237 ~~~~~~~~~l~~~l~~-~~~~~~~~pv~~gsa~~~~Gv~-~LLd~i~~~lPsP~~~~~-~~~~~~~~~~~~-~~~--~~~ 310 (701)
.. .. ....-.++|+ ||++|..+- . +.+..+ |.++.+.+-.++ ... ...
T Consensus 164 ----------a~--~L~g~~~~~~iP~---SAL~GdNv~y~-----------~S~~MpWY~GPtLle~LEtv~~~~G~~~ 217 (411)
T TIGR02034 164 ----------AE--QLAGVRDVTFIPL---SALKGDNVVYS-----------RSESMPWYSGPTLLEHLETVEVERGDAQ 217 (411)
T ss_pred ----------HH--HCCCCCEEEEEEE---ECCCCCCEEEC-----------CCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf ----------98--6389834799873---31368740225-----------6678887578806530040000367422
Q ss_pred CCCCCEECCCC--CCC-CCCCCEEH-HHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCC
Q ss_conf 56542010332--116-54671000-011013345683689832655411104532104744542003567326413874
Q gi|254780264|r 311 SSPLSMLAFKV--MAD-SFVGSLTF-CRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLK 386 (701)
Q Consensus 311 ~~pl~~~v~K~--~~d-~~~G~~a~-~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~ 386 (701)
..||..-|-=+ -+- .||| | |=|-||++++||+|++...|..-+|+++..+-| .+++|.||+=|-++ |+
T Consensus 218 ~~~lRfPVQyVnRPn~tdFRG---yaGt~asG~v~~Gd~v~vlPSG~~srV~rIVt~dg----~l~~A~aG~AvTL~-L~ 289 (411)
T TIGR02034 218 DLPLRFPVQYVNRPNLTDFRG---YAGTIASGSVKVGDEVVVLPSGRSSRVARIVTFDG----DLEQAVAGQAVTLV-LD 289 (411)
T ss_pred CCCCEEEEEEEECCCCCCCCC---HHHHEECCEECCCCEEEEEECCCEEEEEEEEECCC----CHHHCCCCCEEEEE-EE
T ss_conf 478720045652688866652---22310225534598899962796443558870465----33006687538998-60
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHH-
Q ss_conf ---4432110127788410156636652135777615643220257888854102742014450457546876066478-
Q gi|254780264|r 387 ---ETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELH- 462 (701)
Q Consensus 387 ---~~~~gdTl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElh- 462 (701)
++.-||-|...+.++. ..-+|..-+|-++=+|..|...=.|.-|=++..-.=..++.++|=++.|+ ...-+|.
T Consensus 290 ~eiDisRGDll~~~D~~p~-~~~~F~a~lVWm~~~~l~PG~~Y~lk~g~~~v~a~v~~I~~~vdvn~~~~--~~A~~L~G 366 (411)
T TIGR02034 290 DEIDISRGDLLAAADSAPE-VADQFAATLVWMADEPLLPGRSYLLKLGTRKVRASVTAIKHKVDVNTLEK--NAAKELEG 366 (411)
T ss_pred CEEEEECCHHHHCCCCCCC-CCHHHEEEEEEECCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCH--HHHHHHHC
T ss_conf 0043320022122467787-01200125662011345889537887324277589987779972464310--22123106
Q ss_pred HHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 99999998741113320105410
Q gi|254780264|r 463 LEIIVDRMLREFKVDANVGAPYV 485 (701)
Q Consensus 463 Lev~l~~L~~~f~iei~vs~P~V 485 (701)
| .+--.|++.+.+|.+
T Consensus 367 L-------N~iG~v~l~~~~~~~ 382 (411)
T TIGR02034 367 L-------NEIGLVNLSLDEPIA 382 (411)
T ss_pred C-------CCEEEEEEEECCCCC
T ss_conf 8-------705799983066101
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=1.1e-27 Score=196.52 Aligned_cols=123 Identities=33% Similarity=0.342 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|||+||+|||||||.++|.... . . .+..+|+|.......+.+.. .+...|+|||||||.
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~----~----~----------~~~~~g~T~~i~~~~~~~~~--~~~~~i~~iDTPGh~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN----V----A----------AGEAGGITQHIGAFEVPAEV--LKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC----C----C----------EEECCCCEEEECEEEEEEEE--CCCCEEEEEECCCCH
T ss_conf 89999489985989999985867----5----0----------45169816871539999882--588718999899816
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 528999999986045699995588888347999999987399789998176765875555666
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE 154 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~ 154 (701)
+|+....+++.++|.+++||||.+|+++||+.+|.++...++|.++++||||+...+.+....
T Consensus 62 ~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~ 124 (168)
T cd01887 62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 779999999862688999986466754589999999987699789999893089879899999
No 70
>pfam03764 EFG_IV Elongation factor G, domain IV. This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.
Probab=99.96 E-value=3.6e-28 Score=199.60 Aligned_cols=119 Identities=52% Similarity=0.814 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCEEE-EEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 410110144421035-5432115898753027899970288886479812002670024333256778999997188225
Q gi|254780264|r 483 PYVSYRESVTKSCVH-DYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAG 561 (701)
Q Consensus 483 P~V~yrEti~~~~~~-~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~ 561 (701)
|.|+|||||+.++.. ++++++|+|+.++|+++.+.++|++ |.++.|.+++.++++|++|+++|++||++++.+|||+|
T Consensus 1 PqV~yrEti~~~~~~~~~~~~kq~gg~~~~a~v~l~ieP~~-~~g~~f~~~~~~~~ip~e~~~av~~G~~ea~~~G~l~G 79 (120)
T pfam03764 1 PQVAYRETIGKDVKERAYKLKKQSGGDGQYAKVILRIEPLP-GGGNEFVDETKGGQIPKEFIPAVEKGFQEAMKEGPLAG 79 (120)
T ss_pred CCCCCEEECCCCCCCCCCEEEECCCCCCCEEEEEEEEEECC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99876740276412036389552169981689999999889-99739998046772788999998999999984086678
Q ss_pred CEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 50331289999511168767603379999999999998489
Q gi|254780264|r 562 FPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 (701)
Q Consensus 562 epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 602 (701)
+||+||+|+|+|+.+|++||++++|++|++.||++|+++|+
T Consensus 80 ~pv~dvkv~L~dg~~h~~dSs~~aF~~Aa~~A~r~A~~~Ag 120 (120)
T pfam03764 80 EPVRDVKVTLTDGSYHEVDSSEAAFIPAARRAFKEALLKAG 120 (120)
T ss_pred CCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 70799999998500545888877999999999999999758
No 71
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.5e-26 Score=185.60 Aligned_cols=343 Identities=22% Similarity=0.379 Sum_probs=205.8
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEE-EC--C---
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999-60--7---
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVF-WP--G--- 74 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~-~~--~--- 74 (701)
|+..+.++--=||+.+||||||||||+-+| +| -++|...+|.+||||||..-+-.. |+ .
T Consensus 1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~Al---sG------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~ 65 (415)
T COG5257 1 MADPKHIQPEVNIGMVGHVDHGKTTLTKAL---SG------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYR 65 (415)
T ss_pred CCCCCCCCCCEEEEEEEECCCCHHHHEEHH---HC------------EEEECHHHHHHCCCEEEECCCCCCEEECCCCCC
T ss_conf 986555786147623420146624110033---13------------343020688756847984025574575777788
Q ss_pred -C------C--------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEE
Q ss_conf -7------7--------8713899981798755289999999860456999955888-883479999999873997-899
Q gi|254780264|r 75 -R------D--------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-VEPQTETVWRQADKYSVP-RVI 137 (701)
Q Consensus 75 -~------~--------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-v~~qT~~vlr~~~~~~lp-~il 137 (701)
. . .--..+.|+|+|||--..+-+.++..+.|||+|||+|.|- .||||+..|-.+.-.+++ +|+
T Consensus 66 ~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiI 145 (415)
T COG5257 66 PECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIII 145 (415)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 76623478777789973079999974079669999988602344215389995389898973187788776626533999
Q ss_pred EECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 98176765875555666411110268330002345556653024422344311452226985138740043178899999
Q gi|254780264|r 138 FCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYR 217 (701)
Q Consensus 138 vINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (701)
+=||||-.-.+
T Consensus 146 vQNKIDlV~~E--------------------------------------------------------------------- 156 (415)
T COG5257 146 VQNKIDLVSRE--------------------------------------------------------------------- 156 (415)
T ss_pred EECCCCEECHH---------------------------------------------------------------------
T ss_conf 95230111599---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECC-EEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCC
Q ss_conf 9886300234578999863277899889873000003101-003234310001221024889898717862130001222
Q gi|254780264|r 218 DKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISV-KFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGV 296 (701)
Q Consensus 218 ~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~-~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~ 296 (701)
+.+|.| ++++++++-...++ .++|+ ||..+..++.|++++.+++|.|.
T Consensus 157 ------------~AlE~y--------~qIk~FvkGt~Ae~aPIIPi---SA~~~~NIDal~e~i~~~IptP~-------- 205 (415)
T COG5257 157 ------------RALENY--------EQIKEFVKGTVAENAPIIPI---SAQHKANIDALIEAIEKYIPTPE-------- 205 (415)
T ss_pred ------------HHHHHH--------HHHHHHHCCCCCCCCCEEEE---HHHHCCCHHHHHHHHHHHCCCCC--------
T ss_conf ------------988879--------99999862633479954432---56430587999999998689986--------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCC--------CCCCCCEEHHHHHCCCCCCCCEEEEEC-----CCCCCE----EHH
Q ss_conf 245675210112345654201033211--------654671000011013345683689832-----655411----104
Q gi|254780264|r 297 DVKSNSEIDVSAVDSSPLSMLAFKVMA--------DSFVGSLTFCRIYSGKISKGDSLLNTV-----KGKKER----VGR 359 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~pl~~~v~K~~~--------d~~~G~~a~~RV~SGtL~~gd~i~~~~-----~~~~~k----V~~ 359 (701)
.+.+.|-.|+|...+. +.-.|-+.=+-+..|.|+.||.+-... ++.+.. .++
T Consensus 206 -----------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~ 274 (415)
T COG5257 206 -----------RDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTE 274 (415)
T ss_pred -----------CCCCCCCEEEEEEECCCCCCCCCHHHCCCCEECCEEEEEEEECCCEEEECCCEEEECCCCEEEEEEEEE
T ss_conf -----------678999669998640358998997772474322202553685387578548817603992477871389
Q ss_pred HHHHHCCCEEEEEECCCCCEEEEC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 532104744542003567326413-8744432-11012778841015663665213577761564322025788885410
Q gi|254780264|r 360 MLQMHSNSREDIDEAYCGDIIALA-GLKETTT-GDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVA 437 (701)
Q Consensus 360 l~~~~g~~~~~v~~a~aGdIv~I~-Gl~~~~~-gdTl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~ 437 (701)
+..+++. ...+++|.+|-.++|. +||.+.+ +|.|...-.- .+=..|+....+.+|. .| |+++.-
T Consensus 275 i~Sl~ag-~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G---~pG~lPpv~~~~~ie~-------~L---L~RvvG 340 (415)
T COG5257 275 IVSLQAG-GEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVG---KPGTLPPVWTSIRIEY-------HL---LERVVG 340 (415)
T ss_pred EEEEEEC-CEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCC---CCCCCCCCEEEEEEEE-------EE---HHHHHC
T ss_conf 9999737-76643126883687733448421001232012025---8988998247899974-------20---466647
Q ss_pred CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 274201445045754687606647899999998741113320105410
Q gi|254780264|r 438 EDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYV 485 (701)
Q Consensus 438 ~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V 485 (701)
.+-.+++.- -.++|.++...|----==+....+.. .+|++...|..
T Consensus 341 ~~~e~kvep-ik~~E~Lml~VGtatT~GvV~~~k~d-~~ev~Lk~Pvc 386 (415)
T COG5257 341 TKEELKVEP-IKTNEVLMLNVGTATTVGVVTSAKKD-EIEVKLKRPVC 386 (415)
T ss_pred CCCCCCCCC-CCCCCEEEEEEECCEEEEEEEEECCC-EEEEEECCCEE
T ss_conf 532013454-56798699996233167899974075-27999635311
No 72
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.95 E-value=5.3e-27 Score=192.12 Aligned_cols=116 Identities=34% Similarity=0.533 Sum_probs=114.4
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 10144421035543211589875302789997028888647981200267002433325677899999718822550331
Q gi|254780264|r 487 YRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLG 566 (701)
Q Consensus 487 yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~g 566 (701)
|||||++++..++.+++|+||.+||++|.+.+||+++|.++.|++++.++.+|++|+++|++|+++++.+|||+|+||+|
T Consensus 1 YRETI~~~~~~~~~~~rq~gg~~q~a~V~l~veP~~~g~g~~f~~~~~~~~ip~~~~~ave~gv~~~~~~G~l~G~Pv~d 80 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTD 80 (116)
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 96667861799999840459998478999999989889874896147788479999999999999999759815882660
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 289999511168767603379999999999998489
Q gi|254780264|r 567 MKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 (701)
Q Consensus 567 v~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 602 (701)
|+|+|+|+.+|.+||++++|++|++.|+++|+.+|+
T Consensus 81 vkV~L~~g~~h~~dSse~aF~~Aa~~A~r~a~~~AG 116 (116)
T cd01680 81 VRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 799999458878988999999999999999999767
No 73
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.95 E-value=1.4e-27 Score=195.83 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=86.2
Q ss_pred EEEEEEECCCCCCCEEEECCEE----ECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHH--H
Q ss_conf 2789997028888647981200----267002433325677899999718822550331289999511168767603--3
Q gi|254780264|r 512 AKVKIAFEPNPDGDDFVFESKI----VGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVL--A 585 (701)
Q Consensus 512 ~~v~~~~eP~~~g~~~~f~~~~----~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~--~ 585 (701)
++-.|+|+|...|.|+.. |.+ .+.++..+++++|.+||+||+++||||+|||+||+|+|.|..+|++..+++ |
T Consensus 73 ar~IwsfGP~~~g~NiLv-d~T~~~e~~~q~l~eik~~ii~GFq~a~~~GPL~~Ep~rGv~f~l~D~~lh~d~ihrg~gQ 151 (178)
T cd01683 73 ARSIWAFGPDTKGPNVLI-DDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQ 151 (178)
T ss_pred HHCCEEECCCCCCCCEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCC
T ss_conf 711477378888887888-4575520235889999998999999997168765775304799999866133435679863
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 799999999999984898898017899
Q gi|254780264|r 586 FEIAARACFREAASKMGVQLLEPLMKV 612 (701)
Q Consensus 586 ~~~a~~~a~~~a~~~a~p~LlEPi~~~ 612 (701)
+.+|+|+||++|++.|+|+||||||.+
T Consensus 152 Iipa~R~a~~~a~l~A~PrLlEPiy~V 178 (178)
T cd01683 152 IIPTARRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred EEHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 868999999999844998694237739
No 74
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.95 E-value=6.9e-27 Score=191.39 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=109.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 01101444210355432115898753027899970288886479812002670024333256778999997188225503
Q gi|254780264|r 485 VSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPM 564 (701)
Q Consensus 485 V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~epi 564 (701)
|.|||||++++. +.+++|+++++||+++++++||+++|+|+.|++++.++++|++|+++|++|++.++.+|.+ |+||
T Consensus 1 VaYrETI~~~~e--g~~~~~~~g~~~fa~V~l~veP~~~g~G~~F~~~i~gg~iP~~f~~ave~Gv~eal~~Gv~-Gypv 77 (115)
T cd01684 1 VIYKERPLGTGE--GVEHIEVPPNPFWATVGLRVEPLPRGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEV 77 (115)
T ss_pred CEEEECCCCCEE--EEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCCE
T ss_conf 937811487288--9999815999831699999988999998889887608847988999999999999952988-8877
Q ss_pred EEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 31289999511168767603379999999999998489
Q gi|254780264|r 565 LGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 (701)
Q Consensus 565 ~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 602 (701)
+||+++|+|+.+|++||++++|++|+++|+|+|+.+|+
T Consensus 78 ~DvkVtL~dG~~h~vdSs~~aF~~Aa~~A~r~Al~~AG 115 (115)
T cd01684 78 TDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 45899998163048878888999999999999999767
No 75
>KOG0461 consensus
Probab=99.94 E-value=7.4e-26 Score=184.76 Aligned_cols=251 Identities=22% Similarity=0.304 Sum_probs=177.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECC----CCCCCEEEEEEE
Q ss_conf 2799986878897789999999808732142201795613780889870853764079999607----778713899981
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG----RDGGQKKLTIID 86 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~----~~~~~~~iNlID 86 (701)
-|++|+||||+|||||+.+|- ..|+ ++-.|-.++-+|||||+...-.+|.... ..+....+.|+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals-------~~~S----TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461 8 LNLGILGHVDSGKTTLARALS-------ELGS----TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred EEEEEEEECCCCHHHHHHHHH-------HHCC----HHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 244357402576489999998-------6314----03322487531046267412204413572337876641269971
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH-HHHHHHCCCCCCCCC
Q ss_conf 7987552899999998604569999558888834799999998739978999817676587555-566641111026833
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFY-RSVEMISSRLGANPL 165 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~-~~l~~i~~~l~~~~~ 165 (701)
||||.-..--+..+..+.|-+++|||+..|.|+||-.-+-......-+.+++|||||-+...-+ ..++..
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~--------- 147 (522)
T KOG0461 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKS--------- 147 (522)
T ss_pred CCCHHHHHHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH---------
T ss_conf 79708899999710120013467886101766652145443766446269999501226530245678999---------
Q ss_pred EECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 00023455566530244223443114522269851387400431788999999886300234578999863277899889
Q gi|254780264|r 166 VIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDR 245 (701)
Q Consensus 166 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~ 245 (701)
..+
T Consensus 148 -----------------------------------------------------------------------------~kk 150 (522)
T KOG0461 148 -----------------------------------------------------------------------------AKK 150 (522)
T ss_pred -----------------------------------------------------------------------------HHH
T ss_conf -----------------------------------------------------------------------------999
Q ss_pred HHHHHCCEEECCEEEECCCCCEECC----CCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 8730000031010032343100012----210248898987178621300012222456752101123456542010332
Q gi|254780264|r 246 IRSLIRLGTISVKFFPVLCGSSFKN----KGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKV 321 (701)
Q Consensus 246 l~~~l~~~~~~~~~~pv~~gsa~~~----~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~ 321 (701)
+++.++.....+ -.|++-.||..+ .++++|-+++...+--| ..++.+|+.|+|-.-
T Consensus 151 ~~KtLe~t~f~g-~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P-------------------~Rd~~gpflm~vDHC 210 (522)
T KOG0461 151 VRKTLESTGFDG-NSPIVEVSAADGYFKEEMIQELKEALESRIFEP-------------------KRDEEGPFLMAVDHC 210 (522)
T ss_pred HHHHHHHCCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-------------------CCCCCCCEEEEEEEE
T ss_conf 997787457688-885267643787540667899999999762477-------------------768888758986425
Q ss_pred CCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE
Q ss_conf 1165467100001101334568368983265541110453210474454200356732641
Q gi|254780264|r 322 MADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL 382 (701)
Q Consensus 322 ~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I 382 (701)
+.-..-|.+..+-|.+|.++.|+.+-..--+.+.||+.+-.++ .+|.+|.+||-.++
T Consensus 211 F~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461 211 FAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred EEECCCCEEEEEEEEEEEEECCCEEEECCCCHHHHHHHHHHHH----HHHHHHHCCCCEEE
T ss_conf 7862671588634787689628688504333144444699875----12002321562243
No 76
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.94 E-value=2.3e-26 Score=188.02 Aligned_cols=100 Identities=25% Similarity=0.280 Sum_probs=86.8
Q ss_pred CEEEEEEECCCCCCCEEEECCEEECCEE----HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCHHH-
Q ss_conf 0278999702888864798120026700----24333256778999997188225503312899995111687676033-
Q gi|254780264|r 511 FAKVKIAFEPNPDGDDFVFESKIVGGAI----PKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLA- 585 (701)
Q Consensus 511 ~~~v~~~~eP~~~g~~~~f~~~~~~~~~----~~~~~~~v~~g~~~a~~~GpL~~epi~gv~v~l~d~~~~~~~s~~~~- 585 (701)
+++-.|+|+|...|.|+.+ |.+.+... ..++.++|..||+||+++||||+|||+||+|+|.|+..|++..++++
T Consensus 72 ~~~~IwafGP~~~g~NiLv-d~T~~~~~~~~~l~e~~~sii~GFq~a~~~GPL~~Ep~~gv~f~l~d~~~~~d~~~~~~g 150 (177)
T cd01681 72 AARKIWAFGPDRTGPNILV-DDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGG 150 (177)
T ss_pred HHCCEEEECCCCCCCEEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECEECCCCCCCCCC
T ss_conf 7614389258998877999-889763003788999999989999999845866577622079999975015655688874
Q ss_pred -HHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf -79999999999998489889801789
Q gi|254780264|r 586 -FEIAARACFREAASKMGVQLLEPLMK 611 (701)
Q Consensus 586 -~~~a~~~a~~~a~~~a~p~LlEPi~~ 611 (701)
+.+|+|+|||+|++.++||||||||.
T Consensus 151 Qiip~~r~a~~~a~l~a~prL~Epmy~ 177 (177)
T cd01681 151 QIIPAARRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred CEEHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 270999999999983598747643139
No 77
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=1.2e-25 Score=183.47 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=133.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEE--EEE-------EECC-----
Q ss_conf 99986878897789999999808732142201795----61378088987085376407--999-------9607-----
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSAS--TTV-------FWPG----- 74 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~--~sl-------~~~~----- 74 (701)
|+++||||||||||+..|.. | ..++|. ..+...+.|+++|+|..-+. +.| .|..
T Consensus 2 v~v~GhVD~GKSTL~G~Lt~--g------~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~ 73 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ--G------ELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSE 73 (224)
T ss_pred EEEEECCCCCHHHHHHHHHC--C------CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 89994858848899999856--7------742221067778776189997265441156554010145320213476544
Q ss_pred -----CCCCCEEEEEEECCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf -----7787138999817987552899999998--604569999558888834799999998739978999817676587
Q gi|254780264|r 75 -----RDGGQKKLTIIDTPGHVDFTMEVERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 75 -----~~~~~~~iNlIDTPGH~DF~~Ev~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
....+..|.|||+|||.+|.-.+.+++. ..|.|+|||+|.+|+++||+..+..|...++|++++|||||....
T Consensus 74 ~~~~~~~~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~ 153 (224)
T cd04165 74 SDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred CCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 22012136786799997887399999999876355689899993178897799999999999839998999989776898
Q ss_pred C-HHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5-555666411110268330002345556653024422344311452226985138740043178899999988630023
Q gi|254780264|r 148 D-FYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVE 226 (701)
Q Consensus 148 d-~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~ 226 (701)
+ +..++.++...+...- ....|.. +..
T Consensus 154 ~~l~~~~~~i~~~lk~p~-~~k~p~~---------------------------------------------------v~~ 181 (224)
T cd04165 154 NILQETLKDLKRILKVPG-VRKLPVP---------------------------------------------------VKS 181 (224)
T ss_pred HHHHHHHHHHHHHHCCCC-CCCCCEE---------------------------------------------------CCC
T ss_conf 999999999999970447-5568702---------------------------------------------------168
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 4578999863277899889873000003101003234310001221024889898717862
Q gi|254780264|r 227 LDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 227 ~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
.+|.... .......+.+|+|..|+.++.|++. |..+...||.+
T Consensus 182 ~~d~~~~-----------------a~~~~~~~ivPIf~vS~VtG~Gi~~-L~~fL~~LP~r 224 (224)
T cd04165 182 DDDVVLA-----------------ASNFSSERIVPIFQVSNVTGEGLDL-LHAFLNLLPLR 224 (224)
T ss_pred HHHHHHH-----------------HHCCCCCCCCCEEEEECCCCCCHHH-HHHHHHHCCCC
T ss_conf 5889999-----------------8648867774679976589879999-99999876999
No 78
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.93 E-value=1.1e-25 Score=183.70 Aligned_cols=85 Identities=60% Similarity=0.973 Sum_probs=82.8
Q ss_pred EEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 98017899998385774579999972770797453589839999996043733847887863086379899962904088
Q gi|254780264|r 605 LLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 605 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||||+++|.||++++|+|+++|++|||+|.+++..++.++|+|++|++|+|||+++||+.|+|+|+|+++|+||++||
T Consensus 1 LLEPi~~~~I~~P~~~~G~V~~~l~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gf~~~Lrs~T~G~g~~~~~f~~ye~vP 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 97876999999788999999999886582897057459909999998778875499999964889389999975684099
Q ss_pred HHHHH
Q ss_conf 55999
Q gi|254780264|r 685 AHVSK 689 (701)
Q Consensus 685 ~~~~~ 689 (701)
+++++
T Consensus 81 ~~~~~ 85 (85)
T smart00838 81 KSIAE 85 (85)
T ss_pred HHHCC
T ss_conf 56778
No 79
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.92 E-value=1.7e-25 Score=182.48 Aligned_cols=78 Identities=33% Similarity=0.540 Sum_probs=74.3
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEE--CCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 017899998385774579999972770797453--589839999996043733847887863086379899962904088
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE--NRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~--~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||+|+|+||++++|.|+++|++|||+|++++ .+++++.|+|++|++|||||++|||++|||+|+|+++||||++||
T Consensus 1 EPi~~veI~~p~~~~g~V~~~l~~RRG~ii~~~~~~gt~~~~I~A~vPv~esFG~~tdLRs~T~G~a~~~~~Fsh~~~vP 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCHHHHCCCHHHHHHHCCCCCEEEEEECCCEECC
T ss_conf 99489999977798536887630489814134204998679999987578975847999965779726997963231276
No 80
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.92 E-value=5.3e-24 Score=172.84 Aligned_cols=278 Identities=26% Similarity=0.383 Sum_probs=200.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCC---------
Q ss_conf 52799986878897789999999808732142201795----61378088987085376407999960777---------
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRD--------- 76 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~--------- 76 (701)
-=||+..|||||||+||+.+|. + |+.++|+ .|+|-.+-|.+||. ||.+||..-+.+
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~Lv--t------G~~DDG~G~tR~~ldv~kHEverGl---sa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLV--T------GRLDDGDGATRSYLDVQKHEVERGL---SADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred EEEEEEECCCCCCCCEEEEEEE--E------CCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEEEECCCCEEEECC
T ss_conf 3899974244578635987898--4------5777888402113454167776165---322269999724992676058
Q ss_pred ------------CCCEEEEEEECCCCCCCHHHHHHHH--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ------------8713899981798755289999999--86045699995588888347999999987399789998176
Q gi|254780264|r 77 ------------GGQKKLTIIDTPGHVDFTMEVERSI--RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKM 142 (701)
Q Consensus 77 ------------~~~~~iNlIDTPGH~DF~~Ev~~aL--~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKi 142 (701)
..+..+.|+||-||--+.--+.++| .-.|..+|||-|.+|++-.|+..+-.+....+|.|++++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 52077776766520308999853786278998888873266662799998167730330676565646169779999952
Q ss_pred CCCCC-CHHHHHHHHCCCCCC---CCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 76587-555566641111026---83300023455566530244223443114522269851387400431788999999
Q gi|254780264|r 143 DKMGA-DFYRSVEMISSRLGA---NPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRD 218 (701)
Q Consensus 143 Dr~~~-d~~~~l~~i~~~l~~---~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (701)
|.... .++.+.++|...|.. -|+++
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~v--------------------------------------------------- 294 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIV--------------------------------------------------- 294 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEE---------------------------------------------------
T ss_conf 56827889999999999999743465355---------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECC-EEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCC
Q ss_conf 886300234578999863277899889873000003101-0032343100012210248898987178621300012222
Q gi|254780264|r 219 KMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISV-KFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVD 297 (701)
Q Consensus 219 ~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~-~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~ 297 (701)
...||.... . .+.-.+ .++|++-.|+.++.|.. ||+-+..+||.-
T Consensus 295 ------k~~~d~v~a----------------a-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r---------- 340 (527)
T COG5258 295 ------KDTDDVVLA----------------A-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR---------- 340 (527)
T ss_pred ------ECCCHHHHH----------------H-HHHHCCCCEEEEEEEECCCCCCHH-HHHHHHHHCCCC----------
T ss_conf ------055326776----------------5-433237825779998224575389-999999749850----------
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CC--CCCEEHHHHHHHCCCEEEEEE
Q ss_conf 45675210112345654201033211654671000011013345683689832--65--541110453210474454200
Q gi|254780264|r 298 VKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KG--KKERVGRMLQMHSNSREDIDE 373 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~--~~~kV~~l~~~~g~~~~~v~~ 373 (701)
...++.+|+.||+.|++.-...|..+-+-|-||.|+.||+++... .| ...+|+++- | .+.+|++
T Consensus 341 --------r~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-m---h~~rvds 408 (527)
T COG5258 341 --------RRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-M---HHYRVDS 408 (527)
T ss_pred --------CCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEE-E---EEEEECC
T ss_conf --------024778972899875677742578986137761660598799745789957999999999-7---6677032
Q ss_pred CCCCCEEEE--CCCCC--CCCCCCCC
Q ss_conf 356732641--38744--43211012
Q gi|254780264|r 374 AYCGDIIAL--AGLKE--TTTGDTLC 395 (701)
Q Consensus 374 a~aGdIv~I--~Gl~~--~~~gdTl~ 395 (701)
|.||+|+++ .|... +..|=.++
T Consensus 409 a~aG~iig~Al~gv~~e~lerGMVl~ 434 (527)
T COG5258 409 AKAGSIIGIALKGVEKEELERGMVLS 434 (527)
T ss_pred CCCCCEEEEEECCCCHHHHHCCEEEC
T ss_conf 35775899996266877873451752
No 81
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.92 E-value=2.7e-24 Score=174.75 Aligned_cols=117 Identities=23% Similarity=0.312 Sum_probs=107.4
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEC---CEEECCEEHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0110144421035543211589875302789997028888647981---2002670024333256778999997188225
Q gi|254780264|r 485 VSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFE---SKIVGGAIPKEYIPGVRKGIESMLSSGPLAG 561 (701)
Q Consensus 485 V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~g~~~~f~---~~~~~~~~~~~~~~~v~~g~~~a~~~GpL~~ 561 (701)
|+|||||++++..+++++||+||.+||+++.+.++|++++.+..|. +...++.+|++|+++|++|++.+|.+|||+|
T Consensus 1 VaYRETI~~~~~~~~~~~kq~GG~~q~a~V~l~veP~~~~~g~~~~~~~~~~~~~~ip~~~i~AvekG~~~a~~~Gpl~G 80 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSAIEVLLKRIQEAVENGVHSALLQGPLLG 80 (120)
T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97300357525789999986499984899999999998999863799742655886898898999999999996687468
Q ss_pred CEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 50331289999511168767603379999999999998489
Q gi|254780264|r 562 FPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 (701)
Q Consensus 562 epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 602 (701)
+||.|++|+|+|+.+|.++ ++..|..|+..|+++|+.+|+
T Consensus 81 yPv~dv~v~L~~~~~~~~s-S~~~f~~aa~~a~~eAl~~AG 120 (120)
T cd01693 81 FPVQDVAITLHSLTIGPGT-SPTMISACASQCVQKALKSAG 120 (120)
T ss_pred CCEEEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHCC
T ss_conf 8476389999824605999-799999999999999998767
No 82
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.92 E-value=2e-23 Score=169.19 Aligned_cols=384 Identities=23% Similarity=0.312 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEECC--CCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 77899999998087321422017--9561378088987085376407999960777871389998179875528999999
Q gi|254780264|r 23 KTTTTERILYYAGKSHKIGEVHD--GSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERS 100 (701)
Q Consensus 23 KTTL~d~LL~~~g~i~~~g~v~~--g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~~a 100 (701)
-|||+|++=-.+=+-+.+|.+.. |.+.--.+=.|+==|==.|+=.+.+..|| +=+|||||| |..+.
T Consensus 563 nTTLLDkIRks~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPG-------LLfIDTPGH-----eaFt~ 630 (1145)
T TIGR00491 563 NTTLLDKIRKSAVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPG-------LLFIDTPGH-----EAFTN 630 (1145)
T ss_pred CCCCCCCCCCCCEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCE-------EEEEECCCC-----HHHHC
T ss_conf 143310003340132477884010066654668986513212114025786580-------158607862-----34422
Q ss_pred HH-----HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCC
Q ss_conf 98-----6045699995588888347999999987399789998176765875555666411110268330002345556
Q gi|254780264|r 101 IR-----VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSES 175 (701)
Q Consensus 101 L~-----~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~ 175 (701)
|| ++|-||||||-+||++|||+-.+.-++..++|.|+.-|||||-.
T Consensus 631 LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~----------------------------- 681 (1145)
T TIGR00491 631 LRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIP----------------------------- 681 (1145)
T ss_pred CCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC-----------------------------
T ss_conf 010010363011013410269840348999996128987289503305588-----------------------------
Q ss_pred CCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEE
Q ss_conf 65302442234431145222698513874004317889999998863002345789998632778998898730000031
Q gi|254780264|r 176 NFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTI 255 (701)
Q Consensus 176 ~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~ 255 (701)
| |..+....-.+. ........++.+-+.+++.-- .+-|...-+++ +..+.++.-+.
T Consensus 682 ---G-----------W~~~e~~~fl~~------~~kq~~~~~~~l~~~~y~lv~---~kPL~e~GF~A-erFdRv~Dft~ 737 (1145)
T TIGR00491 682 ---G-----------WKSHEGRPFLES------YEKQEQRVKQNLDKKVYNLVI---KKPLAEEGFEA-ERFDRVRDFTR 737 (1145)
T ss_pred ---C-----------CCCCCCCHHHHH------HHHCCHHHHHHHHHHHHHHHH---CCCHHHCCCCC-CCCCCEECEEE
T ss_conf ---9-----------645488516666------541116788668877898873---02211258871-22552000011
Q ss_pred CCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHH
Q ss_conf 01003234310001221024889898717862130001222245675210112345654201033211654671000011
Q gi|254780264|r 256 SVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRI 335 (701)
Q Consensus 256 ~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV 335 (701)
..-++|| ||.+|.|+-+||-+++.+. |+|--.++. -.-++|--+-|--+-...+.|..+=+=|
T Consensus 738 tVaviPv---SA~tGEGIpelL~~l~GLA------Q~YL~~~Lk--------l~~eG~AkGtiLEVKEe~GLG~T~Davi 800 (1145)
T TIGR00491 738 TVAVIPV---SAVTGEGIPELLLILAGLA------QKYLEEKLK--------LEVEGPAKGTILEVKEEKGLGVTIDAVI 800 (1145)
T ss_pred EEEEEEE---ECCCCCCHHHHHHHHHHHH------HHHHHHHCC--------EEECCCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 3689886---6567897489999998888------899885267--------4222786515898785068971699999
Q ss_pred HCCCCCCCCEEEEECCCCC--CEEHHHHHH--------HCCCEEEEEECCC--CCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0133456836898326554--111045321--------0474454200356--732641387444321101277884101
Q gi|254780264|r 336 YSGKISKGDSLLNTVKGKK--ERVGRMLQM--------HSNSREDIDEAYC--GDIIALAGLKETTTGDTLCDPSRPIVL 403 (701)
Q Consensus 336 ~SGtL~~gd~i~~~~~~~~--~kV~~l~~~--------~g~~~~~v~~a~a--GdIv~I~Gl~~~~~gdTl~~~~~~~~~ 403 (701)
|.|.||+||.+...+.... .+|..|+.+ .-.+..+++++.| |=+|+-.+++.+..|
T Consensus 801 YdGilk~~D~iv~~~~d~vivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~kv~A~~~~~~~Ag------------ 868 (1145)
T TIGR00491 801 YDGILKKGDIIVLAGKDDVIVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVKVAAPELDKVLAG------------ 868 (1145)
T ss_pred ECCEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHCC------------
T ss_conf 55771207889981389805766786348888368751043047521577320358727761045457------------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCC
Q ss_conf 56636652135777615643220257888854102742014450457546876066478999999987411133201054
Q gi|254780264|r 404 ERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAP 483 (701)
Q Consensus 404 ~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P 483 (701)
+|++.+ ++ ..|-.|.. +...+|---+++..|++-| .+|-+=--=-||-+...||++ +|+|+..+-
T Consensus 869 ------~P~y~v--~~--~~~iek~~---e~v~~E~e~i~i~~d~~yG-vvvKADtLGSLEA~v~~Lr~~-~vpIk~Adv 933 (1145)
T TIGR00491 869 ------SPIYVV--VS--EEEIEKVK---EEVLKEVEEIKIETDEEYG-VVVKADTLGSLEALVNELRKE-GVPIKKADV 933 (1145)
T ss_pred ------CCEEEE--EC--CCHHHHHH---HHHHHHHHHHHHCCCCCCE-EEEEECCCHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf ------734895--17--82278999---9998767755421365111-799855851189999999857-896766103
Q ss_pred C-CCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEEECCCCC
Q ss_conf 1-011014442103554321158987530-278999702888
Q gi|254780264|r 484 Y-VSYRESVTKSCVHDYIHKKQSGGAGQF-AKVKIAFEPNPD 523 (701)
Q Consensus 484 ~-V~yrEti~~~~~~~~~~~~~~~~~~~~-~~v~~~~eP~~~ 523 (701)
= |+=|--+-..+ .+| ..+.| +-+.+.+.++|.
T Consensus 934 GDv~krDvv~a~~------~~~--~~~~~Gai~AFnVK~Lp~ 967 (1145)
T TIGR00491 934 GDVSKRDVVEAEI------VKQ--EAKKYGAIVAFNVKVLPG 967 (1145)
T ss_pred CCCCCCCHHHHHH------HHH--CCCCCEEEEEECCCCCCH
T ss_conf 8877420000756------640--178600899841555700
No 83
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.91 E-value=1.9e-24 Score=175.77 Aligned_cols=78 Identities=32% Similarity=0.563 Sum_probs=74.7
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEEC--CCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 0178999983857745799999727707974535--89839999996043733847887863086379899962904088
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQEN--RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~--~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||.++|.||++++|.|+++|++|||+|++++. +++++.|+|++|++|||||+++||++|||+|+|+++|+||++||
T Consensus 1 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~vP~~e~fg~~~~LRs~T~G~a~~~~~F~~y~~vP 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECHHHHHCHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 98599999988899889999884478588431000699769999990579971848999965779717998964232287
No 84
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.90 E-value=1.7e-23 Score=169.66 Aligned_cols=78 Identities=50% Similarity=0.886 Sum_probs=77.1
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 017899998385774579999972770797453589839999996043733847887863086379899962904088
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||.++|.+|++++|.|+++|++|||+|++++..+++.+|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~v~I~vP~e~~G~V~~~l~~RRG~i~~~~~~~~~~~i~a~vP~~el~gy~~~Lrs~T~G~g~~s~~f~~y~~vP 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEECHHHHHCCHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf 986999997627987899999877687877720359959999994878861428987866578189999824544497
No 85
>KOG0459 consensus
Probab=99.90 E-value=6.1e-24 Score=172.47 Aligned_cols=290 Identities=23% Similarity=0.312 Sum_probs=194.9
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC------CEECC----C---CEECCCHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 025279998687889778999999980873214------22017----9---5613780889870853764079999607
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKI------GEVHD----G---SATMDWMEQEQERGITITSASTTVFWPG 74 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~------g~v~~----g---~~~~D~~~~E~eRgITi~ss~~sl~~~~ 74 (701)
..--|+.++||||+||+|....|++.+|..++. -+.++ . .-+||+..+||++|-|+....+.|+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECC
T ss_conf 78744899999964401268736789865437789999999876133322489997376012102650541257887134
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEECCCCCCC
Q ss_conf 7787138999817987552899999998604569999558888-------83479999999873997-899981767658
Q gi|254780264|r 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-------EPQTETVWRQADKYSVP-RVIFCNKMDKMG 146 (701)
Q Consensus 75 ~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-------~~qT~~vlr~~~~~~lp-~ilvINKiDr~~ 146 (701)
..++++|+|||--|..++..+...+|-+++|++|..|- ..||+...+.+...++. .|++|||||-+-
T Consensus 157 -----~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459 157 -----KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred -----EEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf -----367763167655556000366111123320113200112103103663057899988623325799999505886
Q ss_pred CCHH-HHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 7555-566641111026833000234555665302442234431145222698513874004317889999998863002
Q gi|254780264|r 147 ADFY-RSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIV 225 (701)
Q Consensus 147 ~d~~-~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~ 225 (701)
.+.. +-.+++.+ .+..++
T Consensus 232 vnWs~eRy~E~~~------------------------------------------------------------k~~~fL- 250 (501)
T KOG0459 232 VNWSNERYEECKE------------------------------------------------------------KLQPFL- 250 (501)
T ss_pred CCCCHHHHHHHHH------------------------------------------------------------HHHHHH-
T ss_conf 6730566899999------------------------------------------------------------999999-
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCC--CCC
Q ss_conf 345789998632778998898730000031010032343100012210248898987178621300012222456--752
Q gi|254780264|r 226 ELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS--NSE 303 (701)
Q Consensus 226 ~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~--~~~ 303 (701)
+.+. ....-..+++|+ |.+++..+....+.+ .+.|.+..... ...
T Consensus 251 --------r~~g-------------~n~~~d~~f~p~---sg~tG~~~k~~~~s~---------cpwy~gp~fl~~ld~l 297 (501)
T KOG0459 251 --------RKLG-------------FNPKPDKHFVPV---SGLTGANVKDRTDSV---------CPWYKGPIFLEYLDEL 297 (501)
T ss_pred --------HHHC-------------CCCCCCCEEEEC---CCCCCCCHHHCCCCC---------CCCCCCCCCCEEHHCC
T ss_conf --------9844-------------468998414202---464555553446665---------8842177555002026
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEE--E
Q ss_conf 10112345654201033211654671000011013345683689832655411104532104744542003567326--4
Q gi|254780264|r 304 IDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDII--A 381 (701)
Q Consensus 304 ~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv--~ 381 (701)
...+..-++|+.+-|..-+.| .|.+.+++|-||++++||++.+........|.++|- +-.+++++-||+-+ -
T Consensus 298 ~~~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----dd~E~~~~~pGenvk~r 371 (501)
T KOG0459 298 PHLERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKLR 371 (501)
T ss_pred CCCCCCCCCCEEEEHHHHCCC--CCEEEEEEECCCCEECCCEEEECCCCCCEEEEEEEC----CCCEEEECCCCCCEEEE
T ss_conf 765546898778552562055--652788786026030598479725886257898751----65201001588515899
Q ss_pred ECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 13874--4432110127788410
Q gi|254780264|r 382 LAGLK--ETTTGDTLCDPSRPIV 402 (701)
Q Consensus 382 I~Gl~--~~~~gdTl~~~~~~~~ 402 (701)
+.|++ ++..|-.||++.++..
T Consensus 372 lkgieeedi~~GfiL~~~~n~~~ 394 (501)
T KOG0459 372 LKGIEEEDISPGFILCSPNNPCK 394 (501)
T ss_pred ECCCCHHHCCCCEEEECCCCCCC
T ss_conf 64533542467348706898555
No 86
>KOG1144 consensus
Probab=99.88 E-value=2.5e-22 Score=162.15 Aligned_cols=294 Identities=24% Similarity=0.315 Sum_probs=162.2
Q ss_pred HHHEE--EEEEECCCCCCHHHHHHHHHHHC-------CCCCCCCEECCCCEECCCHHHHHHHCCCEEE-EEE--EEEECC
Q ss_conf 10252--79998687889778999999980-------8732142201795613780889870853764-079--999607
Q gi|254780264|r 7 IEDSR--NFGIMAHIDAGKTTTTERILYYA-------GKSHKIGEVHDGSATMDWMEQEQERGITITS-AST--TVFWPG 74 (701)
Q Consensus 7 ~e~iR--Nv~iiaHvd~GKTTL~d~LL~~~-------g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s-s~~--sl~~~~ 74 (701)
.++.| =.||+||||.|||-|+|.|=..+ |+..++| .| |.|.|--|.-|-.. +.. .|..+
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIg-----At---~fp~~ni~e~tk~~~~~~K~~~kvP- 540 (1064)
T KOG1144 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIG-----AT---YFPAENIREKTKELKKDAKKRLKVP- 540 (1064)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECC-----CC---CCCHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 13236863789711126605788876205532244566000005-----41---1526778999999875023313787-
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 77871389998179875528999999986045699995588888347999999987399789998176765875555666
Q gi|254780264|r 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE 154 (701)
Q Consensus 75 ~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~ 154 (701)
-+-+||||||--|+.--+|+..+||-||+|||...|+.+||-.-++.++.++.|+|+.+||||||..
T Consensus 541 ------g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYg------- 607 (1064)
T KOG1144 541 ------GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYG------- 607 (1064)
T ss_pred ------EEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCC-------
T ss_conf ------0489658872555556650433455377785311167742067899887548975986101344404-------
Q ss_pred HHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41111026833000234555665302442234431145222698513874004----31788999999886300234578
Q gi|254780264|r 155 MISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPE----DMKDSANSYRDKMIESIVELDDS 230 (701)
Q Consensus 155 ~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lle~i~~~dd~ 230 (701)
|..... ..+.+ +.+...+.|...+-.-+.++-+.
T Consensus 608 ------------------------------------wk~~p~------~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQ 645 (1064)
T KOG1144 608 ------------------------------------WKSCPN------APIVEALKKQKKDVQNEFKERLNNIIVEFAEQ 645 (1064)
T ss_pred ------------------------------------CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ------------------------------------424898------31999998744789999999999999999971
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99986327789988987300000310100323431000122102488989871786213000122224567521011234
Q gi|254780264|r 231 AMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVD 310 (701)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~ 310 (701)
.++.-| . -.+.-++.++.++-.||..+.|+-.||-.++.+-.. +....+. ..+
T Consensus 646 gLN~~L---------y----ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk------~m~~kl~--------y~~ 698 (1064)
T KOG1144 646 GLNAEL---------Y----YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK------TMVEKLA--------YVD 698 (1064)
T ss_pred CCCHHH---------E----EECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH------HHHHHHH--------HHH
T ss_conf 104434---------2----314674655886212213678807899999999999------9998774--------240
Q ss_pred CCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCC--EEHHHHHHHC-------CCEEEEEECCC--CCE
Q ss_conf 565420103321165467100001101334568368983265541--1104532104-------74454200356--732
Q gi|254780264|r 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKE--RVGRMLQMHS-------NSREDIDEAYC--GDI 379 (701)
Q Consensus 311 ~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~--kV~~l~~~~g-------~~~~~v~~a~a--GdI 379 (701)
.-...++=.|++ ++-|...=+=+..|.|+.||++.+.+.+-.. +|..|+.++- ..+....++.| |==
T Consensus 699 ev~cTVlEVKvi--eG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiK 776 (1064)
T KOG1144 699 EVQCTVLEVKVI--EGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIK 776 (1064)
T ss_pred HEEEEEEEEEEE--CCCCCEEEEEEECCEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHHCCCCCEEEHHHHHHHCCCH
T ss_conf 100478998752--377716899987565526987998279986168889763886447641055332366756530502
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 64138744432110
Q gi|254780264|r 380 IALAGLKETTTGDT 393 (701)
Q Consensus 380 v~I~Gl~~~~~gdT 393 (701)
++-.||++++.|..
T Consensus 777 I~A~~LEkaiaG~~ 790 (1064)
T KOG1144 777 IAAKDLEKAIAGTR 790 (1064)
T ss_pred HHHCCHHHHHCCCE
T ss_conf 45325677753775
No 87
>pfam00679 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.88 E-value=2.6e-22 Score=161.96 Aligned_cols=87 Identities=53% Similarity=0.906 Sum_probs=82.8
Q ss_pred EEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECC-CCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 89801789999838577457999997277079745358-98399999960437338478878630863798999629040
Q gi|254780264|r 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR-SVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 604 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~-~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
+|||||++++|.||++++|+|+++|++|||+|++++.. ++++.|+|++|++|++||.++||++|+|+|++++.|+||++
T Consensus 1 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~L~s~T~G~a~~~~~f~~y~~ 80 (89)
T pfam00679 1 VLLEPIMKVEITVPEEYLGDVIGDLNKRRGEILDMEPIGGGRVVIEAEVPLAELFGFSTELRSLTQGRGSFSMEFSGYEP 80 (89)
T ss_pred CEECCEEEEEEEECHHHHHHHHHHHHHHCCEEECCEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCEEE
T ss_conf 96782899999988899999999998706835574775898799999972157667875886138997189999535037
Q ss_pred CCHHHHHH
Q ss_conf 88559999
Q gi|254780264|r 683 VPAHVSKE 690 (701)
Q Consensus 683 vp~~~~~~ 690 (701)
+|+++.++
T Consensus 81 ~~~~~~~~ 88 (89)
T pfam00679 81 VPGDILDR 88 (89)
T ss_pred CCCCHHHC
T ss_conf 89793443
No 88
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.87 E-value=6.3e-22 Score=159.54 Aligned_cols=78 Identities=67% Similarity=1.074 Sum_probs=76.9
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 017899998385774579999972770797453589839999996043733847887863086379899962904088
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||+++|.||++++|+|+++|++|||.|++++..+++..|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EP~~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~gf~~~Lrs~T~G~a~~~~~f~~y~~~p 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCCEECCEECCCEEEEEEECCHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 997999999788999999999987068225303358809999990868874789998875889189998834430085
No 89
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.84 E-value=1e-19 Score=145.26 Aligned_cols=250 Identities=27% Similarity=0.346 Sum_probs=180.5
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE-EEEEEEC
Q ss_conf 252799986878897789999999808732142201795613780889870853764079999607778713-8999817
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK-KLTIIDT 87 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~-~iNlIDT 87 (701)
+---+.|.||+|||||+|.|.+-...-.- | ..-|||-+..+..+.+.+ .. .+.++||
T Consensus 89 ~pp~~~~~gh~dhg~~~ll~~~~~~~~~~---~---------------~~gg~~~~~g~y~~~~~~----~~~~~~f~d~ 146 (594)
T TIGR00487 89 RPPVVTIMGHVDHGKTSLLDSIRKTKVAA---G---------------EAGGITQHIGAYHVEKED----GKKWITFLDT 146 (594)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCC---C---------------CCCCCHHHCCEEEEEECC----CCEEEEEECC
T ss_conf 47636885123554034565554100001---1---------------136520101304566428----8437998407
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 98755289999999860456999955888883479999999873997899981767658755556664111102683300
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVI 167 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~ 167 (701)
|||.-|..--.++..+.|-+++++.+.+|+++||...+.++...++|.++++||+|++.++++...+++...=-. +
T Consensus 147 pgh~~f~~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~---~- 222 (594)
T TIGR00487 147 PGHEAFTLMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLV---P- 222 (594)
T ss_pred CCHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC---C-
T ss_conf 753677877633761001579998415564235688765333307736998612467667877899998751775---0-
Q ss_pred CCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 02345556653024422344311452226985138740043178899999988630023457899986327789988987
Q gi|254780264|r 168 QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIR 247 (701)
Q Consensus 168 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~ 247 (701)
.-|+. .
T Consensus 223 ---------------------~~wgg-----~------------------------------------------------ 228 (594)
T TIGR00487 223 ---------------------EDWGG-----D------------------------------------------------ 228 (594)
T ss_pred ---------------------HHCCC-----C------------------------------------------------
T ss_conf ---------------------11278-----3------------------------------------------------
Q ss_pred HHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 30000031010032343100012210248898987178621300012222456752101123456542010332116546
Q gi|254780264|r 248 SLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFV 327 (701)
Q Consensus 248 ~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~ 327 (701)
..|+|+ |++++.|+..|+|++.-.-. .......+++...+.+.....+..+
T Consensus 229 ---------~~~~~~---~~~~g~g~~~l~~~~l~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~g~ 279 (594)
T TIGR00487 229 ---------TIFVPV---SALTGDGIDELLDAILLQSE-----------------VEELKANPNGQASGTVLEAELDKGR 279 (594)
T ss_pred ---------EEEEEE---ECCCCCCHHHHHHHHHHHHH-----------------HHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf ---------468862---00136765788888887643-----------------4443203232222025641001365
Q ss_pred CCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCC-CCC
Q ss_conf 71000011013345683689832655411104532104744542003567326413874443-211
Q gi|254780264|r 328 GSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETT-TGD 392 (701)
Q Consensus 328 G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~-~gd 392 (701)
|.++..-+-+|+++.||.+..... .+++..+....-..+.++.+...+-+.|+...- .|+
T Consensus 280 g~~~~~~~~~g~l~~gd~~~~g~~-----~g~~~~~~~~~g~~~~~~~p~~~~~~~g~~~~p~~g~ 340 (594)
T TIGR00487 280 GPVATVLVQSGTLRVGDSVVLGAA-----YGKVRALIDENGKSVKEAGPSKPVEILGLSDVPAAGD 340 (594)
T ss_pred CCEEEEEEECCCEECCCEEEEECC-----CCHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 632456661472011641352032-----1100001200242112127652155513556676775
No 90
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.83 E-value=2.1e-20 Score=149.77 Aligned_cols=77 Identities=23% Similarity=0.496 Sum_probs=75.6
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEEC
Q ss_conf 01789999838577457999997277079745358983999999604373384788786308637989996290408
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPV 683 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~v 683 (701)
||||+++|.+|++++|+|+++|++|||+|.+++..++.++|+|.+|++|++||+++||++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~~~i~vP~e~~G~v~~~L~~rrg~i~~~~~~~~~~~i~~~~P~ae~~~y~~~Lrs~T~G~g~~~~~f~~Y~Pc 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCEECCCEEEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCEECC
T ss_conf 98499999825898999999998769887680883996999999877886318897175488859999897973378
No 91
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.83 E-value=2.5e-20 Score=149.31 Aligned_cols=78 Identities=59% Similarity=1.019 Sum_probs=75.4
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECC-CCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEECC
Q ss_conf 01789999838577457999997277079745358-9839999996043733847887863086379899962904088
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR-SVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVP 684 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~-~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~vp 684 (701)
||||+++|.||++++|+|+++|++|||.+++++.. ++++.|+|++|++|+|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EP~~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECHHHHCCHHHHHHCCCCCEEEEEEEECCEEECC
T ss_conf 9989999998889999999998861777987786489859999997468862925274363799169999951305186
No 92
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.83 E-value=2.7e-21 Score=155.51 Aligned_cols=83 Identities=47% Similarity=0.743 Sum_probs=81.1
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 42010332116546710000110133456836898326554111045321047445420035673264138744432110
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDT 393 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdT 393 (701)
|+|+|||+.+||++|+++|+|||||+|++||.|+|...+++||++++|.++|+++++++++.|||||++.||+++.+|||
T Consensus 1 l~AlVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av~gl~~~~tGDT 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCE
T ss_conf 94999986507984409999997078978999996889962973088897579932997896998999978778603889
Q ss_pred CCC
Q ss_conf 127
Q gi|254780264|r 394 LCD 396 (701)
Q Consensus 394 l~~ 396 (701)
|++
T Consensus 81 ltt 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred ECC
T ss_conf 759
No 93
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.82 E-value=6.3e-21 Score=153.10 Aligned_cols=81 Identities=48% Similarity=0.801 Sum_probs=78.1
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 42010332116546710000110133456836898326554111045321047445420035673264138744432110
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDT 393 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdT 393 (701)
|+|+|||+..||+ |+++|+|||||+|++|+.++|.+.+++||++++|.|+|++++++++|.|||||++.||+ +.+|||
T Consensus 1 f~a~vFK~~~d~~-G~lsf~RVysG~l~~g~~v~n~~~~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~gl~-~~tGDT 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CCEEEEEEECCCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEECCC-CCCCCC
T ss_conf 9499998761899-88999999672887999999786891687202289978985076568799899998999-674776
Q ss_pred CCC
Q ss_conf 127
Q gi|254780264|r 394 LCD 396 (701)
Q Consensus 394 l~~ 396 (701)
||+
T Consensus 79 L~d 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred CCC
T ss_conf 359
No 94
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.79 E-value=5.3e-19 Score=140.75 Aligned_cols=77 Identities=26% Similarity=0.540 Sum_probs=73.7
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCC-CEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEEEECCEEEC
Q ss_conf 017899998385774579999972770797453589-83999999604373384788786308637989996290408
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS-VYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPV 683 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~-~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~~F~~~~~v 683 (701)
|||+.++|.||++++|.|+++|++|||.+.+++..+ +...|+|.+|++++|||.++||++|+|+|+|+++|+||+|.
T Consensus 1 EP~~~~~I~~P~e~~G~V~~~l~~Rrg~i~~~~~~~~~~~~l~~~iP~r~l~Gf~~~Lrs~T~G~a~~~~~f~~Y~P~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCEEEECCEECCCCEEEEEEECCHHHHHCCHHHHHHHCCCEEEEEEEECCEECC
T ss_conf 985999999467886899987873880997348469963999998897887251787564367759999995562338
No 95
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.78 E-value=6.7e-20 Score=146.51 Aligned_cols=83 Identities=57% Similarity=0.982 Sum_probs=80.8
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 42010332116546710000110133456836898326554111045321047445420035673264138744432110
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDT 393 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdT 393 (701)
|+|+|||+.+||+.|+++|+|||||+|++||.|++...++++||++++.++|.++.+++++.|||||+|.|++++.+|||
T Consensus 1 ~~a~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~GDT 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCEEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCC
T ss_conf 90999976655988869999995899867975886065104882204788569823946888999999958888705675
Q ss_pred CCC
Q ss_conf 127
Q gi|254780264|r 394 LCD 396 (701)
Q Consensus 394 l~~ 396 (701)
||+
T Consensus 81 l~d 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred CCC
T ss_conf 369
No 96
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.78 E-value=1.3e-19 Score=144.72 Aligned_cols=82 Identities=34% Similarity=0.524 Sum_probs=77.6
Q ss_pred EECCCCCC---CCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 01033211---654671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r 316 MLAFKVMA---DSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD 392 (701)
Q Consensus 316 ~~v~K~~~---d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd 392 (701)
++|||+.. ++|+|+++|+|||||+|++|++|+|...++++++++++.|+|++++.+++|+|||||++.|++++.+||
T Consensus 1 GfVFKiqanmd~~h~grlaf~RV~SG~l~~G~~v~n~rtgK~~ri~r~~~~~a~~Re~ie~A~aGDIvav~g~~~~~tGD 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECCHHHHHHCCCEEECEEECCCEEEEECCCCCEECC
T ss_conf 94899853799100771899999872986899999712796788354453322770080349389899982799873146
Q ss_pred CCCCC
Q ss_conf 01277
Q gi|254780264|r 393 TLCDP 397 (701)
Q Consensus 393 Tl~~~ 397 (701)
|||..
T Consensus 81 TL~~g 85 (85)
T cd03689 81 TLTEG 85 (85)
T ss_pred CCCCC
T ss_conf 51378
No 97
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.77 E-value=1.1e-18 Score=138.58 Aligned_cols=76 Identities=26% Similarity=0.516 Sum_probs=72.8
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEEC-CCCEEEEEEEEEHHHH-CCHHHHHHHHHCCEEEEEEEECCEEE
Q ss_conf 0178999983857745799999727707974535-8983999999604373-38478878630863798999629040
Q gi|254780264|r 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQEN-RSVYVVIDAHVPLSCM-FKYVDSLRSMSQGRGQYTMIFDHYAP 682 (701)
Q Consensus 607 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~-~~~~~~i~a~iP~~e~-~gf~~~LR~~T~G~a~~~~~F~~~~~ 682 (701)
|||++++|.||++|+|.|+++|++|||.+++++. .++.+.|++.+|++|+ |||.++|||+|+|+|+|+++|+||++
T Consensus 1 EPi~~~~I~~P~ey~G~V~~ll~~rRG~~~~~~~~~~~~~~i~~~vPlaE~~~~f~~~LkS~T~G~as~~~e~~~y~~ 78 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRE 78 (80)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCEEECCEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 986999996858989999999998425772546548987999999447997654778766435662999987446235
No 98
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=3.8e-17 Score=128.79 Aligned_cols=112 Identities=24% Similarity=0.318 Sum_probs=84.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996077787138999817987-
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH- 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH- 90 (701)
+||++|+..+|||||..+|+ |.-.. -+ .++ .|.|..+....+.+. +..+.++||||-
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~---g~~~~--~v------s~~------pgtTr~~~~~~~~~~-----~~~~~~vDtpGi~ 61 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALL---GEERV--IV------SDI------AGTTRDSIDVPFEYD-----GKKYTLIDTAGIR 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCE--EE------CCC------CCCEEECCEEEEEEC-----CEEEEEEECCCCC
T ss_conf 99999899998999999983---89844--43------499------991573328999999-----9889998578842
Q ss_pred --------CCCH--HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --------5528--999999986045699995588888347999999987399789998176765
Q gi|254780264|r 91 --------VDFT--MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 --------~DF~--~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.++. .....+++-+|.+++||||.+|+..|.+.+++++.+.+.|+++++||+|..
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli 126 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECC
T ss_conf 13442106889999999999984286589975898998899999999998599869998567526
No 99
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.76 E-value=3e-19 Score=142.33 Aligned_cols=85 Identities=31% Similarity=0.420 Sum_probs=79.5
Q ss_pred CCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCC
Q ss_conf 56542010332116546710000110133456836898326554111045321047445420035673264138744432
Q gi|254780264|r 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTT 390 (701)
Q Consensus 311 ~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~ 390 (701)
++||+++|||+.+|+++|+++|+|||||+|+.++.+++. .+.++||++++.++|.++++++++.|||||+|.||+++.+
T Consensus 1 e~~l~a~VFKi~~d~~~grl~yvRv~sG~l~~~~~v~~~-~~~~eki~~l~~~~~~~~~~v~~~~AGdI~av~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVN-REEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEECC-CCCEEEECEEEEEECCCEEECCEECCCCEEEEECCCCCCC
T ss_conf 997349999888779998599999834098289889658-9960402348999089956977898999999989998837
Q ss_pred CCCCCC
Q ss_conf 110127
Q gi|254780264|r 391 GDTLCD 396 (701)
Q Consensus 391 gdTl~~ 396 (701)
||||++
T Consensus 80 GDtlgd 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred CCCCCC
T ss_conf 772278
No 100
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.75 E-value=7.9e-19 Score=139.62 Aligned_cols=83 Identities=31% Similarity=0.652 Sum_probs=77.0
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCC---CCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCC
Q ss_conf 420103321165467100001101334568368983265---54111045321047445420035673264138744432
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKG---KKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTT 390 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~---~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~ 390 (701)
|.|+||++.+|||.|+++|+|||||+|++||++++...+ ++.||+++|.++|.+++++++|.|||||+|.|++++.+
T Consensus 1 f~mlv~~~~~d~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGDIvai~Gl~~~~i 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCCEEEEEECCCCEEEECCCCCCCC
T ss_conf 96899981018877559999984695179998999616782676223076896069856971875999999948888865
Q ss_pred CCCCCC
Q ss_conf 110127
Q gi|254780264|r 391 GDTLCD 396 (701)
Q Consensus 391 gdTl~~ 396 (701)
|||||+
T Consensus 81 GdTl~D 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred CCCCCC
T ss_conf 471369
No 101
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.69 E-value=9.5e-18 Score=132.69 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=72.9
Q ss_pred CCEECCCCCCCCCCCCE-EHHHHHCCCCCCCCEEEEECCCC---------CCEEHHHHHHHCCCEEEEEECCCCCEEEEC
Q ss_conf 42010332116546710-00011013345683689832655---------411104532104744542003567326413
Q gi|254780264|r 314 LSMLAFKVMADSFVGSL-TFCRIYSGKISKGDSLLNTVKGK---------KERVGRMLQMHSNSREDIDEAYCGDIIALA 383 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~-a~~RV~SGtL~~gd~i~~~~~~~---------~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 383 (701)
|+++|.|+++.++.+++ ||+|||||+|++||+|++.+++. ..+|+++|+++|++++++++|+|||||+|.
T Consensus 1 lvv~v~K~~~~~d~~~F~af~RV~SGtl~~G~~V~Vlg~~y~~~~~~d~~~~~V~~l~l~~Gr~~~~v~~v~AGniv~I~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCEEEEE
T ss_conf 97999861114999889999999886784899999979998989854104989668999621148797826998899998
Q ss_pred CCCCCCCCC-CCCC
Q ss_conf 874443211-0127
Q gi|254780264|r 384 GLKETTTGD-TLCD 396 (701)
Q Consensus 384 Gl~~~~~gd-Tl~~ 396 (701)
||++...+. ||++
T Consensus 81 Gld~~i~KsaTiss 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CCCCCEEEEEEEEC
T ss_conf 24003896799619
No 102
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=1.3e-15 Score=118.99 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=80.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|||+|+..+|||||..+|+-. .+...++ ..|+|. | .....+.+ +++.+.|+||||-.
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~~~--~~a~vs~-~~gtTr-~-------------~~~~~~~~-----~~~~~~l~DtpG~~ 62 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQ--KISIVSP-KPQTTR-N-------------RIRGIYTD-----DDAQIIFVDTPGIH 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CEEEECC-CCCEEE-C-------------CCEEEEEE-----CCEEEEEEECCCCC
T ss_conf 8999999999999999999589--7033238-898263-4-------------42368984-----99789999589866
Q ss_pred C--------CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 5--------28999999986045699995588888347999999987399789998176765
Q gi|254780264|r 92 D--------FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 D--------F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
. +.....+++.-+|.+++|+|+.+|...+.+.+++++...+.|+++++||+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~ 124 (168)
T cd04163 63 KPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEEC
T ss_conf 51456778999999986513655899997898986677999999998099859999788704
No 103
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.66 E-value=7e-15 Score=114.27 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=84.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+-=.|||+|-.-+||+||.-+|+-.. ++.... ..|+|. | +|. ..+.+ ++..+.|+|||
T Consensus 7 ksG~VaivG~PNvGKSTL~N~l~~~k--~siVS~-k~~TTR-~----------~i~---gi~~~-----~~~q~i~iDTp 64 (296)
T PRK00089 7 KSGFVAIVGRPNVGKSTLLNALVGQK--ISIVSP-KPQTTR-H----------RIR---GIVTE-----DDAQIIFVDTP 64 (296)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC--EEEECC-CCCCCC-C----------CEE---EEEEE-----CCEEEEEEECC
T ss_conf 37999999899988899999996896--176149-599872-8----------389---99997-----99799999899
Q ss_pred CCCC--------CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 8755--------28999999986045699995588888347999999987399789998176765
Q gi|254780264|r 89 GHVD--------FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~D--------F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|-.+ +...+..++.-+|-+++|+|+.+|+..|.+.+++.+.+.+.|.++++||+|..
T Consensus 65 Gi~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv 129 (296)
T PRK00089 65 GIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 129 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHC
T ss_conf 86674677878999999999975999999985788989889999998887499889995478842
No 104
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.66 E-value=4.2e-17 Score=128.51 Aligned_cols=82 Identities=29% Similarity=0.485 Sum_probs=71.7
Q ss_pred CCEECCCCCCCCCCCC-EEHHHHHCCCCCCCCEEEEECCC---------CCCEEHHHHHHHCCCEEEEEECCCCCEEEEC
Q ss_conf 4201033211654671-00001101334568368983265---------5411104532104744542003567326413
Q gi|254780264|r 314 LSMLAFKVMADSFVGS-LTFCRIYSGKISKGDSLLNTVKG---------KKERVGRMLQMHSNSREDIDEAYCGDIIALA 383 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~-~a~~RV~SGtL~~gd~i~~~~~~---------~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 383 (701)
+++++.|+.++++.+. +||+|||||+|++||+|++.+++ .+.+|+++|+|+|++++++++|+|||||+|.
T Consensus 1 lv~~v~k~~~~~d~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCEEEEE
T ss_conf 97999971656999789999999866680899999978878888776133889869999956889990988899999997
Q ss_pred CCCCCCCCCCCC
Q ss_conf 874443211012
Q gi|254780264|r 384 GLKETTTGDTLC 395 (701)
Q Consensus 384 Gl~~~~~gdTl~ 395 (701)
||+++.+|+|.+
T Consensus 81 Gld~~~~g~~~t 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCCCCEEEEEEE
T ss_conf 765443775983
No 105
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=2.4e-15 Score=117.22 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=80.9
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC---
Q ss_conf 98687889778999999980873214220179561378088987085376407999960777871389998179875---
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV--- 91 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~--- 91 (701)
|+|+..+|||||..+|+-. .+...+. . .|.|.......+.+.+ ...|.|+||||+-
T Consensus 1 ivG~~N~GKStL~N~L~~~--~~~~vs~-~--------------~gtT~~~~~~~~~~~~----~~~i~lvDtpG~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ--EVAIVSP-V--------------PGTTTDPVEYVWELGP----LGPVVLIDTPGIDEAG 59 (163)
T ss_pred CCCCCCCCHHHHHHHHHCC--CCCEECC-C--------------CCEECCCEEEEEEECC----CCEEEEEECCCCCCCC
T ss_conf 9197998999999999589--9610169-8--------------9986564589999547----8659997279852223
Q ss_pred ----CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf ----5289999999860456999955888883479999999873997899981767658
Q gi|254780264|r 92 ----DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 92 ----DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
.+...+..++.-+|.+++|||+..+...+.+.+++.+...+.|.++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~ 118 (163)
T cd00880 60 GLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCC
T ss_conf 10168999999999868989999878999755669999999971974278853420678
No 106
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=5.1e-15 Score=115.14 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC--
Q ss_conf 999868788977899999998087321422017956137808898708537640799996077787138999817987--
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH-- 90 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH-- 90 (701)
|||+|+..+|||||..+|+-.. .....++. .|+ |-.. ..+.+ +..+.|+||||.
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~-~~~~vs~~-~gt--------------Tr~i--~~~~~------~~~~~~vDtPG~g~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK-KLARTSKT-PGK--------------TQLI--NFFNV------NDKFRLVDLPGYGY 57 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CEEEEECC-CCE--------------EEEE--EEEEE------CCEEEEEECCCCHH
T ss_conf 8999899999999999996899-62786078-977--------------8520--58853------87799996578401
Q ss_pred -C----------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -5----------528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 91 -V----------DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 -~----------DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
- .+..+.......+|.+++|+|+.+|++.|.+.+++++.+.+.|+++++||+|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv 123 (170)
T cd01876 58 AKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 016877999999999999984063349999996322374868999999987699879999867537
No 107
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.64 E-value=1.1e-14 Score=113.15 Aligned_cols=112 Identities=23% Similarity=0.306 Sum_probs=84.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|+|+|-.-.||+||.-+|+-...+| +.|.- |.|-..-.-...|. ++.|+|+||||-.
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aI-----------v~~~~------G~TRD~~~~~~~~~-----~~~~~lvDT~G~~ 60 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAI-----------VADTP------GVTRDRIYGEAEWL-----GREFIVIDTGGID 60 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-----------ECCCC------CCCCCCEEEEEEEC-----CEEEEEEECCCCC
T ss_conf 89998999987899999986886187-----------15989------99847158999999-----9289999897989
Q ss_pred C-----CH----HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 5-----28----999999986045699995588888347999999987399789998176765
Q gi|254780264|r 92 D-----FT----MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 D-----F~----~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
+ |. .++..++.-+|..++||||.+|+.++-+.+.+.+.+.+-|.|+++||+|-.
T Consensus 61 ~~~~~~~~~~i~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~ 123 (438)
T PRK00093 61 PGDEDGFEKQMREQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGK 123 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 888207999999999999985899999983776898789999999997399789999755663
No 108
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.63 E-value=1.8e-14 Score=111.66 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=88.4
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
+..+.+=.|+|||-..-||+||.-+|+-.-.+| |++ +- |+|=.--.....|. +..|.|
T Consensus 274 ~~~~~~p~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~d------~p------GvTRDR~~~~~~~~-----~~~F~l 331 (714)
T PRK09518 274 AGPEPVGTVAIVGRPNVGKSTLVNRILGRREAV-----VED------TP------GVTRDRVSYDAEWA-----GRDFKL 331 (714)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEE-----ECC------CC------CCCCCCCEEEEEEC-----CEEEEE
T ss_conf 677888879998999876899998862884168-----469------89------98837555799999-----916999
Q ss_pred EECCCCC----CC----HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 8179875----52----8999999986045699995588888347999999987399789998176765
Q gi|254780264|r 85 IDTPGHV----DF----TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 85 IDTPGH~----DF----~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|||.|-- +| ..++..|+.-+|..++|||+..|+++.-+.+.+.+++.+.|.++++||+|-.
T Consensus 332 vDTGG~~~~~~~~~~~I~~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~ 400 (714)
T PRK09518 332 VDTGGWEADAEGIEAAIASQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQ 400 (714)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 979999988326999999999999996899999996897989789999999985699889999897887
No 109
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=2.8e-14 Score=110.38 Aligned_cols=110 Identities=25% Similarity=0.372 Sum_probs=81.8
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCC
Q ss_conf 99868788977899999998087321422017956137808898708537640799996077787138999817987552
Q gi|254780264|r 14 GIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDF 93 (701)
Q Consensus 14 ~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF 93 (701)
||+|...+|||||..+|+ |.-.. -|.. + -|.|.......+.|. ++.++|+||||..+.
T Consensus 1 aivG~pN~GKSsL~N~l~---~~~~~--ivs~------~------~gtTr~~~~~~~~~~-----~~~~~lvDTpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT---GRRDA--IVED------T------PGVTRDRIYGEAEWG-----GREFILIDTGGIEPD 58 (157)
T ss_pred CCCCCCCCCHHHHHHHHH---CCCCE--EEEC------C------CCCEEEEEEEEEEEC-----CEEEEEEECCCCCCC
T ss_conf 904899988999999995---88753--5407------9------993566789999999-----988999857875556
Q ss_pred HHH--------HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 899--------9999986045699995588888347999999987399789998176765
Q gi|254780264|r 94 TME--------VERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 94 ~~E--------v~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
... +..++.-+|.+++|+||.+|...+.+.+++++.+.+.|.++++||+|..
T Consensus 59 ~~~~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~ 118 (157)
T cd01894 59 DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 606789999999999986590799998999999899999999998479809999787165
No 110
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.60 E-value=3.8e-14 Score=109.54 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=87.8
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 67102527999868788977899999998087321422017956137808898708537640799996077787138999
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
.+-.++=-|||||-.-.||+||.-+|+-...+| |++ .- |.|=.--.....|. +..|+|
T Consensus 33 ~~~~~lPiVaIvGRPNVGKStLFNrL~~~~~AI-----V~d------~p------GvTRDr~~~~~~~~-----~~~f~l 90 (474)
T PRK03003 33 EASGPLPVVAVVGRPNVGKSTLVNRILGRREAV-----VED------IP------GVTRDRVSYDAEWN-----GRRFVV 90 (474)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEE-----ECC------CC------CCCCCCEEEEEEEC-----CCEEEE
T ss_conf 667999989998999988899999986886388-----059------89------98808636899999-----928999
Q ss_pred EECCCCCC----C----HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 81798755----2----899999998604569999558888834799999998739978999817676
Q gi|254780264|r 85 IDTPGHVD----F----TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 85 IDTPGH~D----F----~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr 144 (701)
+||||--. | ..++..|+.-+|..++|||+.+|+.+.-+.+.+.+.+.+.|.++++||+|-
T Consensus 91 vDTgG~~~~~~~~~~~i~~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~ 158 (474)
T PRK03003 91 QDTGGWEPDAKGLQALVAEQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDS 158 (474)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 97999999747899999999999998699999999689898878999999987539977998675566
No 111
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=4.2e-14 Score=109.25 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=84.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC-
Q ss_conf 9998687889778999999980873214220179561378088987085376407999960777871389998179875-
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV- 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~- 91 (701)
|+|+|-.-.||+||.-+|+-...+| ..+ .. |.|-..-...+.|. ++.++|+||||-.
T Consensus 2 VaIvGrpNVGKStLfN~L~~~~~aI--v~~-~~--------------G~TRD~~~~~~~~~-----~~~~~liDT~G~~~ 59 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAI--VAD-TP--------------GVTRDRKYGDAEWG-----GREFILIDTGGIEE 59 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEE--CCC-CC--------------CCCCCCEEEEEEEC-----CEEEEEEECCCCCC
T ss_conf 8999999987899999987886176--159-89--------------98877337999999-----90799998989898
Q ss_pred -------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -------528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 92 -------DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 -------DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
....++..|+.-+|.+++|||+.+|+.++-+.+.+.+++.+.|.++++||+|-.
T Consensus 60 ~~~~~~~~~~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~ 120 (429)
T TIGR03594 60 DDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7437899999999999986799999985776898679999999987199789999834675
No 112
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.59 E-value=4.1e-14 Score=109.35 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=81.0
Q ss_pred CCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf 65671025279998687889778999999980873214220179561378088987085376407999960777871389
Q gi|254780264|r 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKL 82 (701)
Q Consensus 3 ~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~i 82 (701)
+++|..+.=-|||+|..-.||+||.-+|+-.. .+...++ .-|+ |-. +.+.+. +..+
T Consensus 17 ~~~p~~~~p~VaivGrpNvGKSTL~N~L~g~k-~~a~vs~-~pgt--------------Tr~---i~~~~~-----~~~~ 72 (196)
T PRK00454 17 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRK-NLARTSK-TPGR--------------TQL---INFFEV-----NDGL 72 (196)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEEEEC-CCCC--------------EEE---EEEEEC-----CCCE
T ss_conf 78999889689998489888999999986897-3699747-8886--------------079---888761-----8833
Q ss_pred EEEECCCC--C--------CCHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99817987--5--------5289999999---86045699995588888347999999987399789998176765
Q gi|254780264|r 83 TIIDTPGH--V--------DFTMEVERSI---RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 83 NlIDTPGH--~--------DF~~Ev~~aL---~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.||||||. . .+..-+...| .-.+.++++|||.+|+..|.+.++.++.+.+.|+++++||+|.+
T Consensus 73 ~lvDtpGyG~a~~~~~~~~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l 148 (196)
T PRK00454 73 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKL 148 (196)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHC
T ss_conf 8993799741327787888999999999996233363899997165898889999999986277859999872516
No 113
>KOG0466 consensus
Probab=99.56 E-value=4.9e-14 Score=108.86 Aligned_cols=254 Identities=22% Similarity=0.355 Sum_probs=152.6
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEE-EECCCC-----------
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999-960777-----------
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV-FWPGRD----------- 76 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl-~~~~~~----------- 76 (701)
..=||+.||||-|||+|++-++ +| .-.| ..+.|-||.||||..-+.- .|+-.+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAi---SG----v~Tv--------rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466 37 ATINIGTIGHVAHGKSTVVKAI---SG----VHTV--------RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred EEEEECCEECCCCCCCEEEEEE---CC----CEEE--------EEHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHC
T ss_conf 1443021110025740244540---46----1488--------7133442152688513544578558988999663020
Q ss_pred ----------------CCC----EEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCE
Q ss_conf ----------------871----3899981798755289999999860456999955888-8834799999998739978
Q gi|254780264|r 77 ----------------GGQ----KKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-VEPQTETVWRQADKYSVPR 135 (701)
Q Consensus 77 ----------------~~~----~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-v~~qT~~vlr~~~~~~lp~ 135 (701)
.+. .++.++|||||-=..+-+..+..+.|+|+|+|.+.|- .||||-..+-...-.+++.
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCE
T ss_conf 47899999986568998745899987751479618899887432677543341010488898985066788877863141
Q ss_pred EEE-ECCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHH
Q ss_conf 999-8176765875555666411110268330002345556653024422344311452226985138740043178899
Q gi|254780264|r 136 VIF-CNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSAN 214 (701)
Q Consensus 136 ilv-INKiDr~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (701)
|++ =||||..-.+
T Consensus 182 iiilQNKiDli~e~------------------------------------------------------------------ 195 (466)
T KOG0466 182 IIILQNKIDLIKES------------------------------------------------------------------ 195 (466)
T ss_pred EEEEECHHHHHHHH------------------------------------------------------------------
T ss_conf 89982123354377------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECC-EEEECCCCCEECCCCHHHHHHHHHHHCCCHHHE--E
Q ss_conf 9999886300234578999863277899889873000003101-003234310001221024889898717862130--0
Q gi|254780264|r 215 SYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISV-KFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDV--R 291 (701)
Q Consensus 215 ~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~-~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~--~ 291 (701)
.+. +.++ .+.+.++....++ -++|+ ||.-...++.+.+.+++.+|-|..- .
T Consensus 196 ~A~--------eq~e---------------~I~kFi~~t~ae~aPiiPi---sAQlkyNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466 196 QAL--------EQHE---------------QIQKFIQGTVAEGAPIIPI---SAQLKYNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred HHH--------HHHH---------------HHHHHHHCCCCCCCCEEEE---HHHHCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 889--------8899---------------9999974565579952101---3643367679999998618988201478
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC----CCCC--CE----EHHHH
Q ss_conf 01222245675210112345654201033211654671000011013345683689832----6554--11----10453
Q gi|254780264|r 292 AIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV----KGKK--ER----VGRML 361 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~----~~~~--~k----V~~l~ 361 (701)
++|..-+. +-|-+.|=+ ..+.-.|-++=+-+..|.|+.||.+.+.. +... .+ .+++.
T Consensus 250 ~prlIVIR-------SFDVNkPG~------ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~ 316 (466)
T KOG0466 250 PPRLIVIR-------SFDVNKPGS------EVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIV 316 (466)
T ss_pred CCCEEEEE-------EECCCCCCC------HHHCCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCCEEEEEHHHHHH
T ss_conf 97289998-------623689984------12214574203055432420485888627615555899678756788778
Q ss_pred HHHCCCEEEEEECCCCCEEEEC
Q ss_conf 2104744542003567326413
Q gi|254780264|r 362 QMHSNSREDIDEAYCGDIIALA 383 (701)
Q Consensus 362 ~~~g~~~~~v~~a~aGdIv~I~ 383 (701)
.+.+ +..+...|.+|-.+++.
T Consensus 317 sL~A-E~n~L~~AvPGGLIGVG 337 (466)
T KOG0466 317 SLFA-EQNDLQFAVPGGLIGVG 337 (466)
T ss_pred HHHH-HHCCCEEECCCCEEEEC
T ss_conf 8875-32350242588556412
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=6.6e-13 Score=101.59 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=89.5
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+.-+|||+|-.-.||+||.-+||-..-.+- +.+. |.|-.+-...+.|. ++.+.||||+
T Consensus 171 ~~iriaivGrPNvGKSTl~N~ll~~~r~iv--s~~~---------------GtTrD~i~~~~~~~-----~~~~~~iDTa 228 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV--SDIA---------------GTTRDSIDIPFERN-----GKKYLLIDTA 228 (429)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCC---------------CCCCCCEEEEEEEC-----CEEEEEEECC
T ss_conf 652699974887654677777654333214--7999---------------86310268799999-----9089999898
Q ss_pred CCC---------CC--HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 875---------52--8999999986045699995588888347999999987399789998176765
Q gi|254780264|r 89 GHV---------DF--TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~---------DF--~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|-- ++ ...+.++++-+|.+++|+||.+|+..|-..+++.+.+++.|+|+++||+|..
T Consensus 229 Girkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli 296 (429)
T TIGR03594 229 GIRRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLV 296 (429)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCC
T ss_conf 87636642304779999999999874477999997665884888999998987399769999722303
No 115
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.49 E-value=7.2e-14 Score=107.76 Aligned_cols=130 Identities=35% Similarity=0.521 Sum_probs=114.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
...+++++||.++|||||+..++...+.+...+.++ +.+..+.....+.+|.++. +.. +.| + +.++++|||
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~-~~~-~~w-~-----~~~~~~d~~ 72 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTD-GTTRDYVTESIEEDGKTIT-GAT-FQW-G-----YKFNLLDTP 72 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCC-CCCHHHHEEEEEECCEEEE-EEE-EEC-C-----EEEEEEECC
T ss_conf 750589973477660455544541012001023233-3200000011345580234-343-102-4-----278986257
Q ss_pred C---CCCC-------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 8---7552-------899999998604569999558888834799999998739978999817676587
Q gi|254780264|r 89 G---HVDF-------TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 89 G---H~DF-------~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
| |.+| ..++.+.+..+|.++.++|+.++++.++..+++++...+.|++++.||+|....
T Consensus 73 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (186)
T TIGR00231 73 GLHRQEDYDALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDE 141 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 711355554454332234454443333333222111001025677875322127416998513365546
No 116
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.49 E-value=3.5e-12 Score=96.94 Aligned_cols=116 Identities=25% Similarity=0.285 Sum_probs=90.9
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+.-.|||+|-.-.||+||.-+||-....+- +.. . |.|-.+=...+.|.+ ..+.||||+
T Consensus 171 ~~iriaiiGrpNvGKStl~N~ll~~~r~iv--s~~-~--------------GtTrD~i~~~~~~~~-----~~~~~iDTa 228 (438)
T PRK00093 171 DPIKIAIIGRPNVGKSTLINALLGEERVIV--SDI-A--------------GTTRDSIDTPFERDG-----QKYTLIDTA 228 (438)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCC-C--------------CCCCCCEEEEEEECC-----CEEEEEECC
T ss_conf 560599955888655678887654333204--799-9--------------851123267999899-----679999898
Q ss_pred CC-----CC----C--HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 87-----55----2--89999999860456999955888883479999999873997899981767658
Q gi|254780264|r 89 GH-----VD----F--TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH-----~D----F--~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
|- ++ + ...+.++++-+|-|++|+||.+|+..|-..+.+.+.+++.|+|+++||+|...
T Consensus 229 Girkk~k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~ 297 (438)
T PRK00093 229 GIRRRGKVTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVE 297 (438)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCC
T ss_conf 987656421378899999999998644669999976658848889999999981996699997022256
No 117
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.49 E-value=3.2e-12 Score=97.19 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=90.2
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
..-+|||+|....||+||.-+||-....+- +.+. |.|..+-...+.|. +..+.||||+
T Consensus 210 ~~~rIAIvGrPNvGKStL~N~llg~~r~iv--s~~~---------------GTTRDsI~~~~~~~-----~~~~~liDTA 267 (474)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV--HDVA---------------GTTVDPVDSLIELG-----GKVWRFVDTA 267 (474)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEE--CCCC---------------CCCCCCEEEEEEEC-----CEEEEEEECC
T ss_conf 762799980899878899999858975674--5899---------------85154405899999-----9899999898
Q ss_pred CC---------CCCHH--HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 87---------55289--999999860456999955888883479999999873997899981767658
Q gi|254780264|r 89 GH---------VDFTM--EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH---------~DF~~--Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
|- ++|.+ .+..+++-+|-||+|+||.+|+..|-..+...+.+++.++|+++||+|-..
T Consensus 268 GiRrk~kv~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~ 336 (474)
T PRK03003 268 GLRRKVGQASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (474)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCC
T ss_conf 766355334314589999999998733557999854658749999999999980995799997144168
No 118
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.48 E-value=2.7e-13 Score=104.07 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=69.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC---
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798---
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG--- 89 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG--- 89 (701)
|+|+|...+|||||..+|+-. .+. +-|+.. . .|..++|||||
T Consensus 4 VaivGrpNvGKSTLlN~L~g~--~i~-----------------------~~K~qt--t--------~~~~~~IDTPG~~~ 48 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGE--ELK-----------------------YKKTQA--I--------EFSDNMIDTPGEYL 48 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCC--CEE-----------------------ECCCEE--E--------EECCCEEECCCCCC
T ss_conf 999899999999999997599--445-----------------------178707--9--------85574899987665
Q ss_pred -CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -75528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 90 -HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 90 -H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|-.|...+..++.-+|-.++|+||.+..+...... +...+.|.|++|||||..
T Consensus 49 ~~~~~~~~~~~~~~daDvil~vvDa~~~~~~~~~~~---~~~~~kpvIlViNKiD~~ 102 (143)
T pfam10662 49 ENRRFYSALIVTAADADVIALVQDATEPWSVFPPGF---ASMFNKPVIGIITKIDLA 102 (143)
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH---HHHCCCCEEEEEECCCCC
T ss_conf 628999999999964999999987788667568778---975479889999802245
No 119
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=9e-12 Score=94.30 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=85.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
.-|+|+|-..-||+||-.+|+-..-+| |+ |+- |.|=.----...|. ++.|.+|||+|-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~------D~p------GvTRDr~y~~~~~~-----~~~f~lIDTgGl 61 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-----VS------DTP------GVTRDRIYGDAEWL-----GREFILIDTGGL 61 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEE-----EE------CCC------CCCCCCCCCEEEEC-----CCEEEEEECCCC
T ss_conf 789998999875899998875770267-----60------699------97557754506983-----860799978997
Q ss_pred CCCH---------HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 5528---------999999986045699995588888347999999987399789998176765
Q gi|254780264|r 91 VDFT---------MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 ~DF~---------~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.+.. .++..|+.-+|..|+|||+-+|++++-+.+.+.+.+.+.|.||++||+|..
T Consensus 62 ~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 62 DDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7688128999999999999976799999984887899789999999985399889999766673
No 120
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.48 E-value=7.4e-13 Score=101.26 Aligned_cols=120 Identities=17% Similarity=0.265 Sum_probs=82.9
Q ss_pred CCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf 65671025279998687889778999999980873214220179561378088987085376407999960777871389
Q gi|254780264|r 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKL 82 (701)
Q Consensus 3 ~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~i 82 (701)
+++|.++.=-|||+|..-.||+||.-+|+-.. .+...++ ..|+ |-. +.+... +..+
T Consensus 11 ~~~p~~~~p~IaivGrpNvGKSTL~N~L~g~k-~~a~vs~-~pGt--------------Tr~---i~~~~~-----~~~~ 66 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRK-KLARTSK-TPGR--------------TQL---INFFEV-----NDGF 66 (179)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEEECC-CCCE--------------EEE---CCEEEE-----CCCE
T ss_conf 67999889789998699988899999986898-5589708-9973--------------660---232010-----4736
Q ss_pred EEEECCCC----------CCCHHHHHH---HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 99817987----------552899999---99860456999955888883479999999873997899981767658
Q gi|254780264|r 83 TIIDTPGH----------VDFTMEVER---SIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 83 NlIDTPGH----------~DF~~Ev~~---aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
.||||||. ..|...+.. ....+|.+++||||.+|+..|-..+++.+.+.+.|+++++||+|.+.
T Consensus 67 ~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~ 143 (179)
T TIGR03598 67 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLK 143 (179)
T ss_pred EEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99977760211278888999999999999998864302898743779989999999999975998899997813069
No 121
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.47 E-value=3.3e-12 Score=97.10 Aligned_cols=109 Identities=23% Similarity=0.388 Sum_probs=70.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|+|+|..-+||+||..+|+ |.- . .|.+ . -|.|.......+.|. +..+.|+||||..
T Consensus 1 tVaIvG~PNvGKSTLlN~L~---g~~-~--~Vs~------~------pGtTrd~~~~~~~~~-----~~~~~lvDTpGi~ 57 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALT---GAR-Q--HVGN------W------PGVTVEKKEGTFKYK-----GYEIEIVDLPGTY 57 (188)
T ss_pred CEEEECCCCCCHHHHHHHHH---CCC-C--EEEC------C------CCCCCCEEEEEEEEC-----CEEEEEEECCCCC
T ss_conf 98998899989999999995---999-6--5638------9------997233357687525-----1679999688850
Q ss_pred CC---H-HHH-HH-HH--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 52---8-999-99-99--86045699995588888347999999987399789998176765
Q gi|254780264|r 92 DF---T-MEV-ER-SI--RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF---~-~Ev-~~-aL--~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
++ + .|. .+ ++ .-+|-+++|+||.. . .++..+..|+...+.|+|+++||+|..
T Consensus 58 ~~~~~~~~e~v~~~~~~~~~aDlvl~vvDa~~-~-er~l~l~~~l~~~~~p~IvVlNK~Dl~ 117 (188)
T pfam02421 58 SLSPYSEEEKVARDYLLEEKPDVIINVVDATN-L-ERNLYLTLQLLELGIPVVVALNMMDEA 117 (188)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-H-HHHHHHHHHHHHCCCCEEEEECCCHHC
T ss_conf 14653278999999986236873699976762-4-544899999997699889996170201
No 122
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.47 E-value=1.9e-12 Score=98.68 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|+++|...+|||||..+|. |.-. .-|. ++ -|.|...-...+.|. ++.+.|+||||..
T Consensus 3 ~ValvG~pN~GKStL~N~l~---g~~~--~ivs------~~------pgtTrd~~~~~~~~~-----~~~i~l~DTpG~~ 60 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA---GRDR--AIVS------DI------AGTTRDVIEESIDIG-----GIPVRLIDTAGIR 60 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCC--EEEC------CC------CCEEEECCEEEEEEC-----CEEEEEEECCCCC
T ss_conf 99998899998999999996---8973--3432------88------984786326789539-----9889997267754
Q ss_pred CCHHHH--------HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 528999--------999986045699995588888347999999987399789998176765
Q gi|254780264|r 92 DFTMEV--------ERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev--------~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
+....+ ...+.-+|.+++|+|+.++....-..++... .+.|.++++||+|+.
T Consensus 61 ~~~~~~e~~~~~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~ 120 (157)
T cd04164 61 ETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLL 120 (157)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCC
T ss_conf 445789999999998630157679999889877888899999851--479989999676014
No 123
>KOG0052 consensus
Probab=99.43 E-value=2.3e-14 Score=110.91 Aligned_cols=128 Identities=35% Similarity=0.477 Sum_probs=96.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCC---------CEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 5279998687889778999999980873214---------2201795----61378088987085376407999960777
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKI---------GEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRD 76 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~---------g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~ 76 (701)
-+|+++++|+|+||+|++- +..|.+++. -..-.|. -.+|.+..|++|||+|..+. |+..
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l----~~~~- 78 (391)
T KOG0052 7 HINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL----WKFE- 78 (391)
T ss_pred CCCEEEEEEEEEEEEEEEE---EECCCCCCHHHHHHCHHHHHHCCCEEEEEEEECHHHHCCCCCEEEEEEE----ECCC-
T ss_conf 3025898763221268986---3036645301333066777635641665543111121114654899985----0433-
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCEEEE-ECCCCCC
Q ss_conf 8713899981798755289999999860456999955888-------8834799999998739978999-8176765
Q gi|254780264|r 77 GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPRVIF-CNKMDKM 145 (701)
Q Consensus 77 ~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~ilv-INKiDr~ 145 (701)
...+-++.||.|||-||+.+++..-+.+|.|++.|.|.-| .-.||+...-.+...+++.+++ +||||-.
T Consensus 79 t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052 79 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred CEEEEEEEECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 10677998537788742146876687623058999750353355203351144565553103531456776034336
No 124
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.42 E-value=1.3e-11 Score=93.22 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
-|+|=|+..+||+|++-.|-
T Consensus 6 iIAIDGPagsGKSTvak~lA 25 (714)
T PRK09518 6 IVAIDGPAGVGKSSVSRALA 25 (714)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99977898658999999999
No 125
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.42 E-value=7.4e-12 Score=94.84 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=68.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|||+|-.-+|||||.-+|. |...+.+. ..|+|. ....-.+.+. ++..|.|+||||-.
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~---~~~~~V~~-~pgTT~--------------~~~~g~i~~~----~~~~i~~~DtpGi~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS---NAKPKIAD-YPFTTL--------------VPNLGVVRVD----DGRSFVVADIPGLI 59 (170)
T ss_pred CEEEECCCCCCHHHHHHHHH---CCCCEEEC-CCCCCC--------------CCEEEEEEEC----CCCEEEEECCCCCC
T ss_conf 58998999998999999996---78760325-666523--------------7447799936----98569996488644
Q ss_pred -----CC--HHHHHHHHHHHCEEEEEEECCCCCCH--HHHHHHHHHHH-----CCCCEEEEECCCCCC
Q ss_conf -----52--89999999860456999955888883--47999999987-----399789998176765
Q gi|254780264|r 92 -----DF--TMEVERSIRVTDGAIALLDSNAGVEP--QTETVWRQADK-----YSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 -----DF--~~Ev~~aL~~~DgailvVDa~eGv~~--qT~~vlr~~~~-----~~lp~ilvINKiDr~ 145 (701)
++ ..+..+.+.-+|..++|||+..+..+ +.+.+.+.... .+-|.++++||+|.+
T Consensus 60 ~~~~~~~~l~~~~l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~ 127 (170)
T cd01898 60 EGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCC
T ss_conf 45546622489998613345617999989987898999999999999827444038650677620242
No 126
>PRK04213 GTP-binding protein; Provisional
Probab=99.41 E-value=1.7e-11 Score=92.53 Aligned_cols=107 Identities=20% Similarity=0.378 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|||+|..-.|||||.-+|+ |.-...++ .-| .|-. .....|. .+-|+||||.-
T Consensus 3 ~VaivGRpNVGKSTL~N~L~---g~k~~vs~-~pg--------------~Tr~--~~~~~~~-------~~~~vDtPG~g 55 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALT---GKKVRVGK-RPG--------------VTLK--PNEYDWG-------DFILVDLPGFG 55 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCC-CCC--------------EEEE--EEEEECC-------CEEEEECCCCC
T ss_conf 79997699988999999996---89851348-996--------------4873--4588508-------89999999962
Q ss_pred -------C-------CHHH-HHHHHHHHCEEEEEEECCCC-----------CCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -------5-------2899-99999860456999955888-----------88347999999987399789998176765
Q gi|254780264|r 92 -------D-------FTME-VERSIRVTDGAIALLDSNAG-----------VEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 -------D-------F~~E-v~~aL~~~DgailvVDa~eG-----------v~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
. +..+ +..++..+|.+++|||+..+ ..+....+++++.+.+.|.++++||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i 135 (195)
T PRK04213 56 FMSGVPKKVQERIKDEIVHYIEDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKI 135 (195)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC
T ss_conf 22458888999999999999999885178999999578654421123445677778999999987499879999873305
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.38 E-value=5e-11 Score=89.52 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=69.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|+|+|-.-+|||||.-+|. |.-...++. .| -|.....-.+.|. +..+.|+||||..
T Consensus 2 ~VaivG~pNvGKStL~N~L~---g~~~~v~~~-p~--------------TTr~~~~~~~~~~-----~~~~~liDTpGi~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT---RAKPEVAPY-PF--------------TTKSLFVGHFDYK-----YLRWQVIDTPGLL 58 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCEECCC-CC--------------CCCCCEEEEEEEC-----CCEEEEECCCCCC
T ss_conf 79998899988999999995---898602375-87--------------2357436899983-----7276872488655
Q ss_pred CCHHH--------HHHHHH-HHCEEEEEEECCCCCCH---HHHHHHHHHHH--CCCCEEEEECCCCCC
Q ss_conf 52899--------999998-60456999955888883---47999999987--399789998176765
Q gi|254780264|r 92 DFTME--------VERSIR-VTDGAIALLDSNAGVEP---QTETVWRQADK--YSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~E--------v~~aL~-~~DgailvVDa~eGv~~---qT~~vlr~~~~--~~lp~ilvINKiDr~ 145 (701)
+...+ ...+++ ..|..++|+|+.+.... ....++++... .+.|+++++||+|..
T Consensus 59 ~~~~~~~~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~ 126 (168)
T cd01897 59 DRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 67478888999999999983577689999688767848999999999877652588879999475345
No 128
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.38 E-value=2.4e-11 Score=91.56 Aligned_cols=113 Identities=23% Similarity=0.196 Sum_probs=77.5
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
++--.|.++|...+|||||..++.. +.. . .+. -|+..+.-++.++ +..+++.||
T Consensus 12 ~k~~Ki~llG~~~vGKTsll~~~~~--~~~------~------~~~-------pTig~~~~~v~~~-----~~~~~iwDt 65 (174)
T pfam00025 12 NKEMRILILGLDNAGKTTILYKLKL--GEI------V------TTI-------PTIGFNVETVTYK-----NVKFTVWDV 65 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC--CCC------C------CCC-------CCCCCEEEEEEEC-----CEEEEEEEC
T ss_conf 9666999999999988999999954--998------8------744-------7468238999989-----999999827
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCC
Q ss_conf 98755289999999860456999955888883-4799999998----73997899981767658
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQAD----KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~~~----~~~lp~ilvINKiDr~~ 146 (701)
|||-.|..-...-.+-+||+|+|+|+..--.- ..+..|+++. ..++|++++.||+|...
T Consensus 66 ~Gqe~~~~~~~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~ 129 (174)
T pfam00025 66 GGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129 (174)
T ss_pred CCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 9870232679988417826899986786787999999999987542358970899872566767
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.38 E-value=1.4e-11 Score=92.99 Aligned_cols=116 Identities=22% Similarity=0.160 Sum_probs=81.0
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
...+..-|.++|.-++|||||..+|.. +... ++ ..|+.....++.+. ++.+++-
T Consensus 10 ~~~~~~Ki~ilG~~~sGKTsll~~l~~--~~~~------------~~-------~pT~g~~~~~v~~~-----~~~~~lw 63 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLAS--EDIS------------HI-------TPTQGFNIKTVQSD-----GFKLNVW 63 (173)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHC--CCCC------------CC-------CCCCCEEEEEEEEC-----CEEEEEE
T ss_conf 568775899997999988999999856--9986------------60-------68113237999989-----9999998
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHH----HHHHHCCCCEEEEECCCCCCCC
Q ss_conf 179875528999999986045699995588888-3479999----9998739978999817676587
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVW----RQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vl----r~~~~~~lp~ilvINKiDr~~~ 147 (701)
|||||--|..-....++-+|++|+|||+.+--. .++...| +.....++|++++.||+|.+.+
T Consensus 64 D~~G~~~~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a 130 (173)
T cd04155 64 DIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred ECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 5587510126899765556379999966756889999999999974130069838999976667778
No 130
>COG1159 Era GTPase [General function prediction only]
Probab=99.37 E-value=1.8e-11 Score=92.35 Aligned_cols=114 Identities=20% Similarity=0.279 Sum_probs=81.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
==|||+|-...||+||+.+|+-. .++.. -..++--.+.| .=.+. .+++.|-|+||||-
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~--KisIv----------S~k~QTTR~~I-------~GI~t---~~~~QiIfvDTPGi 64 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ--KISIV----------SPKPQTTRNRI-------RGIVT---TDNAQIIFVDTPGI 64 (298)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC--CEEEE----------CCCCCHHHHHE-------EEEEE---CCCCEEEEEECCCC
T ss_conf 99999869987689999898568--25751----------59853114421-------47998---69844999848988
Q ss_pred C--------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 5--------5289999999860456999955888883479999999873997899981767658
Q gi|254780264|r 91 V--------DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 91 ~--------DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
. --..++..+|.-+|-.++|||+.++..+..+.++.+....+.|.+++|||||+..
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 8765178899999999872457599999866656891079999977643898699998402578
No 131
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.37 E-value=3.6e-11 Score=90.48 Aligned_cols=111 Identities=22% Similarity=0.206 Sum_probs=78.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
=-+|.++|.-.+|||||+.+|+ .+.+.. + ..|+-...-++.+. ++.+++-||+|
T Consensus 14 ~~KililG~~~sGKTsll~~l~--~~~~~~---------~----------~pT~G~~~~~~~~~-----~~~l~iwD~~G 67 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLL--GEDIDT---------I----------SPTLGFQIKTLEYE-----GYKLNIWDVGG 67 (173)
T ss_pred CEEEEEECCCCCCHHHHHHHHC--CCCCCC---------C----------CCCCCEEEEEEEEC-----CEEEEEEECCC
T ss_conf 3189999899978899999983--999897---------2----------67057778999989-----99999996688
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 755289999999860456999955888883-479999999----873997899981767658
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
+-.|..-...-.+-+||+|+|||+..--.- +.+..|..+ ...+.|++++.||+|...
T Consensus 68 ~e~~~~~~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~ 129 (173)
T cd04154 68 QKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 60200589997226653899985565788999999999998635415984799987656777
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.34 E-value=7.1e-11 Score=88.57 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
+-.|+|+|...+|||||..+|. |.-...++ ..+ +.+|. ..-.+.+. +.+.|.|+||||
T Consensus 41 ~p~VaivG~PNvGKSTLlN~L~---g~~~~v~~-~~~-tT~d~-------------~~~~i~~~----~~~~i~l~DT~G 98 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALT---GADVYAED-QLF-ATLDP-------------TTRRLRLP----DGREVLLTDTVG 98 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCEEEC-CCC-CCCCC-------------EEEEEEEC----CCCEEEEEECCC
T ss_conf 9879998899998999999994---89963415-677-64576-------------36689956----997799983686
Q ss_pred C-CCCHHHHH-------HHHHHHCEEEEEEECCCCCC-HH---HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 7-55289999-------99986045699995588888-34---7999999987399789998176765
Q gi|254780264|r 90 H-VDFTMEVE-------RSIRVTDGAIALLDSNAGVE-PQ---TETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 90 H-~DF~~Ev~-------~aL~~~DgailvVDa~eGv~-~q---T~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
. -|.-.+.. ..+.-+|..++|||+..... .| .+.+++++...+.|+++++||+|.+
T Consensus 99 ~i~~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~ 166 (204)
T cd01878 99 FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 44678378999999999999739899999979985366779999999998065557607888670479
No 133
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.33 E-value=3.3e-11 Score=90.72 Aligned_cols=108 Identities=25% Similarity=0.246 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|...+|||||..+|.. +.. . ++. -|+.....++.+ +++.+++.||||+--
T Consensus 2 i~ilG~~~vGKTsll~~l~~--~~~------~------~~~-------pTig~~~~~i~~-----~~~~l~iwDt~G~~~ 55 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKL--GEV------V------TTI-------PTIGFNVETVEY-----KNVSFTVWDVGGQDK 55 (158)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCC------C------CCC-------CEECCCEEEEEE-----CCEEEEEEECCCCCC
T ss_conf 99999999988999999953--998------8------744-------560740899984-----889999998899722
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 289999999860456999955888883-479999999----873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
|..-...-.+-+|++|+|+|+..--.- ..+..+..+ ...++|++++.||+|...
T Consensus 56 ~~~~~~~y~~~a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~ 114 (158)
T cd00878 56 IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 14489987276877689983798889999999999998660557653898760547665
No 134
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=8.5e-11 Score=88.06 Aligned_cols=132 Identities=20% Similarity=0.154 Sum_probs=90.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 2799986878897789999999808732-142201795613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-.|.|+|.+++||||++..+......+- ..+. .+.... .|..|+--..=++.+. +++.+.|.||||
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~-------~~s~k~--kr~tTva~D~g~~~~~----~~~~v~LfgtPG 77 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADAS-------SVSGKG--KRPTTVAMDFGSIELD----EDTGVHLFGTPG 77 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCEEECCCC-------CCCCCC--CCCEEEEECCCCEEEC----CCCEEEEECCCC
T ss_conf 069998443664066788765345620103355-------554466--4550686324113775----861689965897
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 7552899999998604569999558888834799999998739-97899981767658755556664
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYS-VPRVIFCNKMDKMGADFYRSVEM 155 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~-lp~ilvINKiDr~~~d~~~~l~~ 155 (701)
|.-|--=..-.++-++|||++||+..+..-+-+.+++.....+ +|.++++||.|-..+..-+.+.+
T Consensus 78 q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e 144 (187)
T COG2229 78 QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIRE 144 (187)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 0778989998748764289999569996467899999885206887899950422577899899999
No 135
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.27 E-value=1.4e-10 Score=86.68 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC--
Q ss_conf 986878897789999999808732142201795613780889870853764079999607778713899981798755--
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD-- 92 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D-- 92 (701)
|+|-.-+|||||.-+|. |.-.+.+. .- |-|.....-.+.+.+ ...+.|+||||-.+
T Consensus 1 ivG~PNvGKSTL~N~Lt---~~~~~v~~-~p--------------gTTr~~~~g~~~~~~----~~~i~~~DtpGi~~~~ 58 (176)
T cd01881 1 LVGLPNVGKSTLLNALT---NAKPKVAN-YP--------------FTTLEPNLGVVEVPD----GARIQVADIPGLIEGA 58 (176)
T ss_pred CCCCCCCCHHHHHHHHH---CCCCEEEC-CC--------------CCEEEEEEEEEEECC----CCEEEEEECCCCCCCC
T ss_conf 96999888999999996---89960307-89--------------967612467999479----9669999578754573
Q ss_pred -----CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-------HHH----------HHCCCCEEEEECCCCCC
Q ss_conf -----289999999860456999955888883479999-------999----------87399789998176765
Q gi|254780264|r 93 -----FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-------RQA----------DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 -----F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-------r~~----------~~~~lp~ilvINKiDr~ 145 (701)
......+.++-+|..++|+|+.+....+....+ ..+ ...+.|+++++||+|.+
T Consensus 59 ~~~~~~~~~~l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~ 133 (176)
T cd01881 59 SEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECC
T ss_conf 378789999998741088999999898765545445899999999999971156655543269719999686034
No 136
>KOG1143 consensus
Probab=99.21 E-value=2.7e-10 Score=84.80 Aligned_cols=368 Identities=20% Similarity=0.285 Sum_probs=201.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC---E-ECCCHHHHHHHCCCEEEEEEEEEECCCC-----------
Q ss_conf 799986878897789999999808732142201795---6-1378088987085376407999960777-----------
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS---A-TMDWMEQEQERGITITSASTTVFWPGRD----------- 76 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~---~-~~D~~~~E~eRgITi~ss~~sl~~~~~~----------- 76 (701)
-++++|..|+||+||+.-| ..|+.|.|+ | -+=..+-|.+-|- +|.+|.+.-+.+
T Consensus 169 RvAVlGg~D~GKSTLlGVL--------TQgeLDnG~GrARln~FRh~HEiqsGr---TSsis~evlGFd~~g~vVNY~~~ 237 (591)
T KOG1143 169 RVAVLGGCDVGKSTLLGVL--------TQGELDNGNGRARLNIFRHPHEIQSGR---TSSISNEVLGFDNRGKVVNYAQN 237 (591)
T ss_pred EEEEECCCCCCCCEEEEEE--------ECCCCCCCCCEEEEEHHCCHHHHCCCC---CCCCCHHCCCCCCCCCCCCHHHC
T ss_conf 9998527656722366554--------105314788706630110636540576---32001010053653430022320
Q ss_pred --------CCCEEEEEEECCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf --------87138999817987552899999998--60456999955888883479999999873997899981767658
Q gi|254780264|r 77 --------GGQKKLTIIDTPGHVDFTMEVERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 77 --------~~~~~iNlIDTPGH~DF~~Ev~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
..+.+++|||--||.-+..-+..+|. --|.|++||.|..|+.-.|+..+-.+...++|+.+++.|||-..
T Consensus 238 ~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143 238 MTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD 317 (591)
T ss_pred CCHHHHHHHHCCEEEEEECCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 45999874102338876504422313045220036798627999986888765408888899971787699998401236
Q ss_pred C-CHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 7-555566641111026833000234555665302442234431145222698513874004317889999998863002
Q gi|254780264|r 147 A-DFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIV 225 (701)
Q Consensus 147 ~-d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~ 225 (701)
- -++.++.++...+... |+ .+.... +-
T Consensus 318 ~~~~~~tv~~l~nll~~~---------------Gc-----------------~kvp~~--------------------Vt 345 (591)
T KOG1143 318 RQGLKKTVKDLSNLLAKA---------------GC-----------------TKVPKR--------------------VT 345 (591)
T ss_pred CHHHHHHHHHHHHHHHHC---------------CC-----------------CCCCEE--------------------EE
T ss_conf 321789999999887423---------------76-----------------326348--------------------50
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCC
Q ss_conf 34578999863277899889873000003101003234310001221024889898717862130001222245675210
Q gi|254780264|r 226 ELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEID 305 (701)
Q Consensus 226 ~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~ 305 (701)
.-||+. +.. ....++.++|+|+.|+..+.|.. ||..+...||+ ....+-+..-..
T Consensus 346 ~~ddAv---------------~Aa--q~~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp-~~~~~e~~~L~q------ 400 (591)
T KOG1143 346 TKDDAV---------------KAA--QELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSP-AGTAEERIQLVQ------ 400 (591)
T ss_pred CHHHHH---------------HHH--HHHCCCCCEEEEEEEECCCCCHH-HHHHHHHHCCC-CCCHHHHHHHHC------
T ss_conf 507887---------------888--87536881148998504763266-99999864387-677277999866------
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CCC--CCEEHHHHHHHCCCEEEEEECCCCCEEE
Q ss_conf 112345654201033211654671000011013345683689832--655--4111045321047445420035673264
Q gi|254780264|r 306 VSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KGK--KERVGRMLQMHSNSREDIDEAYCGDIIA 381 (701)
Q Consensus 306 ~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~~--~~kV~~l~~~~g~~~~~v~~a~aGdIv~ 381 (701)
-|.-..|-.++.-|+.|.+.=+-+-+|.++.|+.+.+.. .|. +.+|..+ -+.+.++-.+.||+-.-
T Consensus 401 ------~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI----~Rnr~acrvvraGqaAs 470 (591)
T KOG1143 401 ------LPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSI----RRNRQACRVVRAGQAAS 470 (591)
T ss_pred ------CCCEEEHHHEECCCCCCCCCCCEEEECEECCCCEEEEECCCCCCEEEEEEEEE----ECCCCCEEEECCCCCEE
T ss_conf ------76226674705677656503115422323268605750479983467886236----41664202632763115
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCEEEEEECCH
Q ss_conf 138744432110127788410156636652135777615643220257888854102-7420144504575468760664
Q gi|254780264|r 382 LAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAE-DPSLRVSMDPNSGQTNLSGMGE 460 (701)
Q Consensus 382 I~Gl~~~~~gdTl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~-Dp~l~v~~~~etGE~il~g~GE 460 (701)
+. +.++ |.+.|.+|+-.+... .|.+-..+. -+.++..
T Consensus 471 ls----------l~d~--------------------------D~~~LR~GMVl~~~~~nP~~c~~F~---A~~~lLf--- 508 (591)
T KOG1143 471 LS----------LNDP--------------------------DGVSLRRGMVLAEIDHNPPVCYEFT---ANLLLLF--- 508 (591)
T ss_pred EE----------CCCC--------------------------CCCCHHCCEEEEECCCCCCEEEEEE---EEEHHHH---
T ss_conf 52----------2688--------------------------7431103418963378994579986---0002000---
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC----CCCEEEECCE
Q ss_conf 78999999987411133201054101101444210355432115898753027899970288----8864798120
Q gi|254780264|r 461 LHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNP----DGDDFVFESK 532 (701)
Q Consensus 461 lhLev~l~~L~~~f~iei~vs~P~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~~~~eP~~----~g~~~~f~~~ 532 (701)
|- .-+++ |....|.-- .+..++....++.+..-..++||-+.++|--.| .|.-+.|..-
T Consensus 509 -Ha----T~i~~--GFQ~TVhiG------svrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfReG 571 (591)
T KOG1143 509 -HA----TYICE--GFQATVHIG------SVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFREG 571 (591)
T ss_pred -HH----HHHEE--CCEEEEEEC------CEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCHHCCCCCEEEEECC
T ss_conf -26----74302--206899974------35654555411240224678637999996178333067873433056
No 137
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.21 E-value=4.8e-12 Score=96.07 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=72.1
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEE----EECCCCCCC
Q ss_conf 4201033211654671000011013345683689832655411104532104744542003567326----413874443
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDII----ALAGLKETT 389 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv----~I~Gl~~~~ 389 (701)
|.|++|+.+.|+|+|.++++||++|+|++||+++....+++.+|.++-.|. ++..+++++.||+|+ ++..++++.
T Consensus 1 LrALifDS~yD~y~Gvv~~vRV~~G~lk~gd~i~~~~t~~~~~v~evG~~~-P~~~~~~~L~aGeVGyii~gik~~~d~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFR-PEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEHHHCCCCCEEEEEEECC-CCCCCCCEECCCCCCEEEECCCCCCCCC
T ss_conf 908999867227887899999979999179852233489963855988717-9976388494784048997342015573
Q ss_pred CCCCCC
Q ss_conf 211012
Q gi|254780264|r 390 TGDTLC 395 (701)
Q Consensus 390 ~gdTl~ 395 (701)
+||||+
T Consensus 80 vGDTit 85 (86)
T cd03699 80 VGDTIT 85 (86)
T ss_pred CCCEEE
T ss_conf 447875
No 138
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=8.3e-10 Score=81.69 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||.++|.-.+|||||..+|......... + .=|+-....++.+ ++..+++.|++|+.
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~~~~---------~----------~pT~G~~~~~~~~-----~~~~~~iwD~~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---------I----------VPTVGFNVESFEK-----GNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCC---------C----------CCCCCEEEEEEEE-----CCEEEEEEECCCCC
T ss_conf 9999999999889999999728987564---------1----------6850757899983-----99889999858874
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHHHH------HCCCCEEEEECCCCCCC
Q ss_conf 52899999998604569999558888834-799999998------73997899981767658
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQ-TETVWRQAD------KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~q-T~~vlr~~~------~~~lp~ilvINKiDr~~ 146 (701)
.|..-...-.+-+||+|+|||+.+--.-+ .+..+.... ..++|++++.||+|.+.
T Consensus 57 ~~r~lw~~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~ 118 (162)
T cd04157 57 KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCC
T ss_conf 42055898705674489997076388899999999999717655179845999981477889
No 139
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.17 E-value=4.1e-10 Score=83.65 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC--------C
Q ss_conf 97789999999808732142201795613780889870853764079999607778713899981798755--------2
Q gi|254780264|r 22 GKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD--------F 93 (701)
Q Consensus 22 GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D--------F 93 (701)
|||||..+|+-. .....+.. -|.|.......+.|. +..+.|+||||... .
T Consensus 1 GKSsLiN~L~~~--~~~~v~~~---------------~gtT~~~~~~~~~~~-----~~~i~liDTPGi~~~~~~~~~~~ 58 (106)
T pfam01926 1 GKSTLINALTGK--KRAIVSDY---------------PGTTRDPNEGRVELD-----GKQIILVDTPGIIEGASKGEGEL 58 (106)
T ss_pred CHHHHHHHHHCC--CCEEECCC---------------CCCCCCCEEEEEEEC-----CEEEEEEECCCCCCCCCHHHHHH
T ss_conf 912799999788--85555288---------------998846355899889-----98899983787322650467888
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899999998604569999558888834799999998739978999817
Q gi|254780264|r 94 TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNK 141 (701)
Q Consensus 94 ~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINK 141 (701)
......++.-+|.+++|+|+.+++..+...+++++...+.|+++++||
T Consensus 59 ~~~~~~~~~~~d~il~viD~~~~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 59 GNRTLEAIEEADLILHVVDASEGLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999997234573799999999999989999999999869988999939
No 140
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.17 E-value=4e-10 Score=83.74 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=72.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|--.+|||||+-+|.. +.... ++.+ ||-...-.+.+ ++..+.+-||||+-.
T Consensus 2 I~llG~~~~GKTsll~~~~~--~~f~~-----------~~~p-------Tig~~~~~i~~-----~~~~l~iwDt~G~e~ 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG--GQFSE-----------DTIP-------TVGFNMRKVTK-----GNVTLKVWDLGGQPR 56 (159)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC-----------CCCC-------CCCEEEEEEEE-----CCEEEEEEECCCHHH
T ss_conf 89999999869999999975--99988-----------6167-------32505899998-----999999997983587
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHH----HHHCCCCEEEEECCCCCC
Q ss_conf 2899999998604569999558888834-7999999----987399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-TETVWRQ----ADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-T~~vlr~----~~~~~lp~ilvINKiDr~ 145 (701)
|..=...-++-+||+|+|+|+..--.-+ .+..+.+ ....++|++++.||+|..
T Consensus 57 ~~~l~~~y~~~~~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~ 114 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 7999998746863687515778788999999999999854434898289888356764
No 141
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.16 E-value=5.3e-10 Score=82.94 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=89.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+..-|||||..-.||+||+-+||-.-..|- +. .. |.|..+=-+.+.|. +..|-||||-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv--~~-~a--------------GTTRD~I~~~~e~~-----~~~~~liDTA 234 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIV--SD-IA--------------GTTRDSIDIEFERD-----GRKYVLIDTA 234 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCEEEE--CC-CC--------------CCCCCCEEEEEEEC-----CEEEEEEECC
T ss_conf 750899992787870588877506825984--59-99--------------86220331258998-----8189999877
Q ss_pred CC----------CCCH-HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 87----------5528-9999999860456999955888883479999999873997899981767658
Q gi|254780264|r 89 GH----------VDFT-MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH----------~DF~-~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
|- .-|+ ..+..|..-+|-+++|+||.+|+..|-+++...+...+.+.++++||.|-..
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred CCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 877466412426887505467678656889999988878368899999999975897499997532578
No 142
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.16 E-value=1.1e-09 Score=80.92 Aligned_cols=108 Identities=23% Similarity=0.209 Sum_probs=73.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|.-.+|||||..++. .|.. . ++.+ |+....-.+.++ +..+++-||+||-.
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~------~------~~~p-------Tig~~~~~i~~~-----~~~~~iwD~~G~e~ 55 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEV------V------TTIP-------TIGFNVETVTYK-----NLKFQVWDLGGQTS 55 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCC------C------CCCC-------CCCCCEEEEEEC-----CEEEEEEECCCCCC
T ss_conf 9999999998999999997--0996------7------7578-------488246999989-----88999996798624
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-----HHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 2899999998604569999558888834-----79999999873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-----TETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-----T~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
|..-...-.+-+||+|+|+|+..--.-+ -+.++.+....++|++++.||+|...
T Consensus 56 ~r~~~~~y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~ 114 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 46278874667889999974578789999999999998346536981999997667765
No 143
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.16 E-value=1.5e-09 Score=80.11 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=79.9
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+=-.|.++|--++|||||+.+|.. +.... . .-|+......+.++ +..+++-||+
T Consensus 14 k~~KililG~~~sGKTsil~~l~~--~~~~~---~----------------~pT~G~~~~~i~~~-----~~~~~iwD~~ 67 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVH---T----------------SPTIGSNVEEIVYK-----NIRFLMWDIG 67 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCCCC---C----------------CCCCCCCEEEEEEC-----CEEEEEEECC
T ss_conf 779999998999988999999973--99277---1----------------67236046999978-----8899999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCC
Q ss_conf 875528999999986045699995588888-347999999987----3997899981767658
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQADK----YSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~~~----~~lp~ilvINKiDr~~ 146 (701)
|+-.|..-...-.+-+||+|+|||+..--. ...+.-++.+.+ .++|++++.||.|...
T Consensus 68 G~e~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~ 130 (174)
T cd04153 68 GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 986566226777057753799997678889999999999997261016982899995555655
No 144
>KOG0463 consensus
Probab=99.13 E-value=3.4e-10 Score=84.16 Aligned_cols=288 Identities=21% Similarity=0.293 Sum_probs=174.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC---E-ECCCHHHHHHHCCCEEEE--EE-----------------
Q ss_conf 799986878897789999999808732142201795---6-137808898708537640--79-----------------
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS---A-TMDWMEQEQERGITITSA--ST----------------- 68 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~---~-~~D~~~~E~eRgITi~ss--~~----------------- 68 (701)
-|+++|.||+||+||..-|-+ |+.+.|. | .+=..+.|.|-|-|-... ..
T Consensus 135 RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463 135 RVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred EEEEEECCCCCCCEEEEEEEE--------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 989971224772216766530--------443467227788776522310367544556620200254642158898888
Q ss_pred EEEECCCC-CCCEEEEEEECCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99960777-87138999817987552899999998--6045699995588888347999999987399789998176765
Q gi|254780264|r 69 TVFWPGRD-GGQKKLTIIDTPGHVDFTMEVERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 69 sl~~~~~~-~~~~~iNlIDTPGH~DF~~Ev~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
+|.|-.-- .....|++||--||--+.--+.-++. +-|.+.|.|-|..|+-..|+..+-.|+...+|..+|+.|||..
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred CCCCEEECCCCCEEEEEEECCCHHHHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 64313431364226898861541552311441033678872589851666511144776545564268579999850558
Q ss_pred CCC-HHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 875-5556664111102683300023455566530244223443114522269851387400431788999999886300
Q gi|254780264|r 146 GAD-FYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESI 224 (701)
Q Consensus 146 ~~d-~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i 224 (701)
.++ +++.+..+...+.. +-...+|+--.
T Consensus 287 PANiLqEtmKll~rllkS-~gcrK~PvlVr-------------------------------------------------- 315 (641)
T KOG0463 287 PANILQETMKLLTRLLKS-PGCRKLPVLVR-------------------------------------------------- 315 (641)
T ss_pred CHHHHHHHHHHHHHHHCC-CCCCCCCEEEE--------------------------------------------------
T ss_conf 178999999999998628-77650757885--------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCC
Q ss_conf 23457899986327789988987300000310100323431000122102488989871786213000122224567521
Q gi|254780264|r 225 VELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEI 304 (701)
Q Consensus 225 ~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 304 (701)
..||-+. ... ...+.++.|+|..|..++... +||.++...+|.-.
T Consensus 316 -s~DDVv~----~A~-------------NF~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~---------------- 360 (641)
T KOG0463 316 -SMDDVVH----AAV-------------NFPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRR---------------- 360 (641)
T ss_pred -CCCCEEE----EEC-------------CCCCCCCCCEEEECCCCCCCH-HHHHHHHHHCCCCC----------------
T ss_conf -1564478----613-------------586212354078615667783-89999986437445----------------
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC-CCC---CCEEHHHHHHHCCCEEEEEECCCCCEE
Q ss_conf 0112345654201033211654671000011013345683689832-655---411104532104744542003567326
Q gi|254780264|r 305 DVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV-KGK---KERVGRMLQMHSNSREDIDEAYCGDII 380 (701)
Q Consensus 305 ~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~-~~~---~~kV~~l~~~~g~~~~~v~~a~aGdIv 380 (701)
....+.|.-..+-.++.-|.+|.++-+-.++|+++-+|.+.... ..- ...|+++ .+++-+|..+.+|+-.
T Consensus 361 --~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~VrcGQtA 434 (641)
T KOG0463 361 --QLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVRCGQTA 434 (641)
T ss_pred --CCCCCCCCCEEECCEEECCCCCEEEECCEEEEEEEECCEEEECCCCCCCEEEEEHHHH----HHCCCCCEEEECCCHH
T ss_conf --6665797303522248517852276422552157752278866788887645345664----5403661487526404
Q ss_pred --EECCCC--CCCCCCCCCCCCC
Q ss_conf --413874--4432110127788
Q gi|254780264|r 381 --ALAGLK--ETTTGDTLCDPSR 399 (701)
Q Consensus 381 --~I~Gl~--~~~~gdTl~~~~~ 399 (701)
++..++ ++++|-.+.++.-
T Consensus 435 SFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463 435 SFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred HHHHHHCCHHHHHCCEEEECCCC
T ss_conf 36766354666536418866877
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.11 E-value=2.3e-09 Score=78.82 Aligned_cols=106 Identities=22% Similarity=0.383 Sum_probs=66.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCC-
Q ss_conf 9868788977899999998087321422017956137808898708537640799996077787138999817987552-
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDF- 93 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF- 93 (701)
|+|..-+|||||.-+|. |.-. .|. |+ -|.|.......+.+. ++.+-|+||||.-++
T Consensus 1 ivG~pNvGKSTL~N~L~---g~~~---~vs------~~------pgtTrd~~~~~~~~~-----~~~~~lvDtpGi~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQ---KVG------NW------PGVTVEKKEGRFKLG-----GKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHH---CCCC---EEC------CC------CCCEEEEEEEEEEEC-----CEEEEEEECCCCCCCC
T ss_conf 97989888999999995---9986---461------78------982763478899629-----9379999798741256
Q ss_pred --HHH--HHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --899--99999---86045699995588888347999999987399789998176765
Q gi|254780264|r 94 --TME--VERSI---RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 94 --~~E--v~~aL---~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
+.+ +.++. .-+|.+++|+|+.. + -+...+..+....+.|+|+++||+|..
T Consensus 58 ~~~~~e~i~~~~~~~~~~d~vl~vvD~~~-~-~~~l~~~~~l~~~~~p~ivV~NK~D~~ 114 (158)
T cd01879 58 PYSEDEKVARDFLLGEKPDLIVNVVDATN-L-ERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCH-H-HHHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 41356789999998517871799977740-6-776899999986599889994027765
No 146
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.10 E-value=3.4e-09 Score=77.73 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=75.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|.++|.-.+|||||+.+|.. |... ++. -|+.....++.++ +..+++-|++|+-
T Consensus 2 KililG~~~sGKTsll~~l~~--~~~~------------~~~-------pT~g~~~~~~~~~-----~~~l~iwD~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV------------TTI-------PTIGFNVETVEYK-----NISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCC------------CCC-------CCCCCCEEEEEEC-----CEEEEEEECCCCC
T ss_conf 999999999998999999972--9967------------758-------9687017999989-----8999999789972
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHH----HHCCCCEEEEECCCCCCCC
Q ss_conf 528999999986045699995588888-3479999999----8739978999817676587
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQA----DKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~----~~~~lp~ilvINKiDr~~~ 147 (701)
-|..=...=.+-+||+|+|||+..--. ...+..|... ...++|++++.||.|.+.+
T Consensus 56 ~~r~l~~~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~ 116 (159)
T cd04150 56 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC
T ss_conf 1465678647687389999977777899999999999962353369829999975667789
No 147
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.10 E-value=1.2e-09 Score=80.71 Aligned_cols=110 Identities=25% Similarity=0.246 Sum_probs=75.8
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCC-EEEEEEEEEECCCCCCCEEEEEEECCCCCCC
Q ss_conf 986878897789999999808732142201795613780889870853-7640799996077787138999817987552
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGIT-ITSASTTVFWPGRDGGQKKLTIIDTPGHVDF 93 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgIT-i~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF 93 (701)
|+|+.++|||||+.+++...-. +.++..| +..-..++.+ ++..+.++++||||+.+|
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-------------------PEEYETTIIDFYSKTIEV---DGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC-------------------CCCCCCCEEEEEEEEEEE---CCEEEEEEEEECCCCHHH
T ss_conf 9294996889999999719888-------------------764687157899999999---999999999985895115
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 89999999860456999955888883479-----999999873997899981767658
Q gi|254780264|r 94 TMEVERSIRVTDGAIALLDSNAGVEPQTE-----TVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 94 ~~Ev~~aL~~~DgailvVDa~eGv~~qT~-----~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
.......++-+|++++|+|+...-..+.. ..++.....+.|++++.||+|...
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 116 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
T ss_conf 6789999753579999986588888999999999999975258984999985356154
No 148
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.09 E-value=1.2e-08 Score=74.30 Aligned_cols=134 Identities=20% Similarity=0.339 Sum_probs=91.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
=+|+++|...+|||||-.+| +|.-.+.|+ +- |.|+.-..-.+.+. ++.+.++|.||-
T Consensus 4 i~IALvGNPN~GKSTLFN~L---TG~~q~VgN-wP--------------GvTVEkk~G~~~~~-----~~~~~ivDLPG~ 60 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQL---TGARQRVGN-WA--------------GVTVERKEGQFSTT-----DHQVTLVDLPGT 60 (772)
T ss_pred CEEEEECCCCCCHHHHHHHH---HCCCCEEEC-CC--------------CCEEEEEEEEEEEC-----CCEEEEEECCCC
T ss_conf 56998889987899999998---689983578-99--------------76474238999968-----946999979977
Q ss_pred CCCHH--------H-HHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-HHHHHHHHC
Q ss_conf 55289--------9-99999---86045699995588888347999999987399789998176765875-555666411
Q gi|254780264|r 91 VDFTM--------E-VERSI---RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGAD-FYRSVEMIS 157 (701)
Q Consensus 91 ~DF~~--------E-v~~aL---~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d-~~~~l~~i~ 157 (701)
-..+. | |.+-. .-.|..|.||||.-= + ....+.-|+...++|+|+++|+||..... ..-..+.+.
T Consensus 61 YSL~~~S~e~s~dE~Var~~ll~~~pDvvvnVvDAtnL-e-RnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls 138 (772)
T PRK09554 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL-E-RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS 138 (772)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCH-H-HHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHH
T ss_conf 86999997777308999998613999899998016875-4-428999999974999899987799898877932899999
Q ss_pred CCCCCCCCEECC
Q ss_conf 110268330002
Q gi|254780264|r 158 SRLGANPLVIQL 169 (701)
Q Consensus 158 ~~l~~~~~~~~~ 169 (701)
+.||..+++...
T Consensus 139 ~~LGvPVV~~~A 150 (772)
T PRK09554 139 ARLGCPVIPLVS 150 (772)
T ss_pred HHHCCCEEEEEE
T ss_conf 985899899982
No 149
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.08 E-value=4.8e-09 Score=76.82 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=77.4
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+-..|.++|--.+|||||+.+|.. |.. .. + -.|+..+..++.++ +..+++-|+.
T Consensus 16 k~~kililGl~~sGKTsil~~l~~--~~~------~~------~-------~pTvg~~~~~~~~~-----~~~l~iwD~~ 69 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKL--GEV------VT------T-------IPTIGFNVETVEYK-----NLKFTMWDVG 69 (182)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCC------CC------C-------CCCCCCCEEEEEEC-----CEEEEEEECC
T ss_conf 747999996799889999999962--997------77------3-------78688456999978-----8899999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 875528999999986045699995588888-3479999999----873997899981767658
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
|+--|..=...=.+-+||+|+|||+..-=. .+.+..|..+ ...++|++++.||.|.+.
T Consensus 70 Gqe~~r~lw~~yy~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~ 132 (182)
T PTZ00133 70 GQDKLRPLWRHYYQNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPN 132 (182)
T ss_pred CCCCCCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCC
T ss_conf 984547478760567644999996678789999999999997144224885999970668778
No 150
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=2.9e-09 Score=78.17 Aligned_cols=112 Identities=20% Similarity=0.130 Sum_probs=76.5
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+=-+|.++|.-.+||||++.+|. .+.... + ..|+....-++.+ ++..+++-|++
T Consensus 8 k~~kililG~~~sGKTsil~~l~--~~~~~~------------~-------~pTvg~~~~~~~~-----~~~~l~iwD~~ 61 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLK--LGQSVT------------T-------IPTVGFNVETVTY-----KNVKFNVWDVG 61 (168)
T ss_pred CEEEEEEECCCCCCHHHHHHHHH--CCCCCC------------C-------CCCCCCEEEEEEE-----CCEEEEEEECC
T ss_conf 88899999999999899999996--699876------------0-------2626700799998-----98899999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEECCCCCCC
Q ss_conf 875528999999986045699995588888-34799999998----73997899981767658
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQAD----KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~~----~~~lp~ilvINKiDr~~ 146 (701)
|+-.|..=...-.+-+||+|+|||+..--. .+.+..++.+. ..++|++++.||.|.+.
T Consensus 62 Gqe~~r~l~~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~ 124 (168)
T cd04149 62 GQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCC
T ss_conf 997466065764378866899983776789999999999997145227986999997566777
No 151
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.07 E-value=5.2e-09 Score=76.60 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=76.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-..|.++|--.+|||||+.+|.. |.. .. + --|+.....++.+ ++..+++-||.|
T Consensus 13 ~~kililG~~~~GKTsil~~l~~--~~~------~~------~-------~pTvg~~~~~~~~-----~~~~l~iwD~~G 66 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES------VT------T-------IPTIGFNVETVTY-----KNISFTVWDVGG 66 (175)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC--CCC------CC------C-------CCCCCCEEEEEEE-----CCEEEEEEECCC
T ss_conf 89999998899998999999965--997------77------5-------7978810799998-----989999998999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHH----HHHCCCCEEEEECCCCCCC
Q ss_conf 755289999999860456999955888883-47999999----9873997899981767658
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQ----ADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~----~~~~~lp~ilvINKiDr~~ 146 (701)
+--|..=...=.+-+||+|+|||+..--.- +.+..|.. ....++|++++.||.|.+.
T Consensus 67 qe~~r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~ 128 (175)
T smart00177 67 QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCC
T ss_conf 85455367775577618999986687789999999999996315316986999984566767
No 152
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.05 E-value=2.3e-09 Score=78.81 Aligned_cols=115 Identities=21% Similarity=0.146 Sum_probs=76.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|.-.+|||||..+|-. ......+. ...++ .-|+-...-++.+. ++.+++-||||+-.
T Consensus 2 ivilG~~~~GKTsll~~l~~--~~~~~~~~--~~~~~----------~~Tvg~~~~~i~~~-----~~~l~iwD~~Gqe~ 62 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT--LFSKYKGL--PPSKI----------TPTVGLNIGTIEVG-----NARLKFWDLGGQES 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCCCC----------CCCCCEEEEEEEEC-----CEEEEEEECCCCHH
T ss_conf 99999999888899998875--03676777--65540----------35313268999989-----99999996898788
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 28999999986045699995588888-3479999999----873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
|..-...-.+-+||+|+|||+..--. ...+..++.+ ...++|++++.||+|.+.
T Consensus 63 ~~~l~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~ 121 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 87899874289878999986686788999999999975110248962999970667665
No 153
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=6.8e-09 Score=75.83 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=76.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|-++|--++|||||.-+|.... .. .|++ ||+.+......+ ...+...++++|+|||.
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~--~~--------~T~t-----------S~~~n~~~~~~~-~~~~~~~~~lvD~PGH~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGK--YR--------STVT-----------SIEPNVATFILN-SEGKGKKFRLVDVPGHP 59 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CC--------CCCC-----------CCCCCCEEEECC-CCCCCCEEEEEECCCCH
T ss_conf 59999079998999999997499--88--------8778-----------887862066402-46687279999879968
Q ss_pred CCHHHHHHHHH-HHCEEEEEEECCCC---CCHHHHHHHH-----HHHHCCCCEEEEECCCCCCCCCHHH
Q ss_conf 52899999998-60456999955888---8834799999-----9987399789998176765875555
Q gi|254780264|r 92 DFTMEVERSIR-VTDGAIALLDSNAG---VEPQTETVWR-----QADKYSVPRVIFCNKMDKMGADFYR 151 (701)
Q Consensus 92 DF~~Ev~~aL~-~~DgailvVDa~eG---v~~qT~~vlr-----~~~~~~lp~ilvINKiDr~~~d~~~ 151 (701)
-+.......+. .++|.|.|||++.= +...-+.+.. +....++|++++.||.|...+-...
T Consensus 60 klR~~~~~~~~~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA~~~~ 128 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAK 128 (203)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHH
T ss_conf 899999999875498999999688751119999999999986266436899889998661434578999
No 154
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.01 E-value=1.4e-08 Score=73.91 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=72.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|+++|-..+|||||.-+|. |+-...+.-- .-|+....-.+.|+ +..|.|+||||.+
T Consensus 2 ~V~LVG~PN~GKSTLln~LT---~a~~~v~~yp---------------fTT~~pi~g~~~~~-----~~~iqlvDtPGli 58 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAAYE---------------FTTLTCVPGVLEYK-----GAKIQLLDLPGII 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCC---------------CCCCCCEEEEEEEC-----CEEEEEEECCCCC
T ss_conf 59999999999999999997---8995436989---------------78757477799989-----9899999673002
Q ss_pred CCH-------HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CEEEEECCCCCC
Q ss_conf 528-------999999986045699995588888347999999987399-----789998176765
Q gi|254780264|r 92 DFT-------MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSV-----PRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~-------~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~l-----p~ilvINKiDr~ 145 (701)
... .++.+.+|-+|..++|||+.+... |-+.+.+++.+.++ ++-+.|+|=++.
T Consensus 59 ~~a~~g~g~g~~~l~~~r~aD~il~VvD~~~~~~-~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~ 123 (233)
T cd01896 59 EGAADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKG 123 (233)
T ss_pred CCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 4633332068999999875899999984798266-7899999998605110357876257771358
No 155
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.01 E-value=5.1e-08 Score=70.24 Aligned_cols=135 Identities=22% Similarity=0.366 Sum_probs=93.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.||++|....|||||-.+| +|...+.|+ +. |.|+.-..-.+.+++ +.|.+||.||-=
T Consensus 5 ~valvGNPNvGKTtlFN~L---TG~~q~VgN-wp--------------GvTVEkkeg~~~~~~-----~~i~ivDLPG~Y 61 (653)
T COG0370 5 TVALVGNPNVGKTTLFNAL---TGANQKVGN-WP--------------GVTVEKKEGKLKYKG-----HEIEIVDLPGTY 61 (653)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCEECC-CC--------------CCEEEEEEEEEEECC-----CEEEEEECCCCC
T ss_conf 3898569985489999998---566746547-89--------------806998788997358-----548998689756
Q ss_pred CCH---H-H-HHHHHH---HHCEEEEEEECCCCCCHHHHHHH---HHHHHCCCCEEEEECCCCCCCC-CHHHHHHHHCCC
Q ss_conf 528---9-9-999998---60456999955888883479999---9998739978999817676587-555566641111
Q gi|254780264|r 92 DFT---M-E-VERSIR---VTDGAIALLDSNAGVEPQTETVW---RQADKYSVPRVIFCNKMDKMGA-DFYRSVEMISSR 159 (701)
Q Consensus 92 DF~---~-E-v~~aL~---~~DgailvVDa~eGv~~qT~~vl---r~~~~~~lp~ilvINKiDr~~~-d~~~~l~~i~~~ 159 (701)
++. . | |.+-.- -.|..|-||||. +-|+.+ -|..+.+.|+++.+|++|-..- -.+-..+.++..
T Consensus 62 SL~~~S~DE~Var~~ll~~~~D~ivnVvDA~-----nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~ 136 (653)
T COG0370 62 SLTAYSEDEKVARDFLLEGKPDLIVNVVDAT-----NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKL 136 (653)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCC-----HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHH
T ss_conf 5888992089999998638998899960232-----37777899999998599859996127568864971269999998
Q ss_pred CCCCCCEECCCCCCC
Q ss_conf 026833000234555
Q gi|254780264|r 160 LGANPLVIQLPVGSE 174 (701)
Q Consensus 160 l~~~~~~~~~p~~~~ 174 (701)
+|..+.+....-+.+
T Consensus 137 LGvPVv~tvA~~g~G 151 (653)
T COG0370 137 LGVPVVPTVAKRGEG 151 (653)
T ss_pred HCCCEEEEEECCCCC
T ss_conf 689889987305889
No 156
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.00 E-value=1.3e-08 Score=74.05 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=88.0
Q ss_pred HHHEE---EEEEECCCCCCHHHHHHHHHHHCCCCC--CCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 10252---799986878897789999999808732--1422017956137808898708537640799996077787138
Q gi|254780264|r 7 IEDSR---NFGIMAHIDAGKTTTTERILYYAGKSH--KIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKK 81 (701)
Q Consensus 7 ~e~iR---Nv~iiaHvd~GKTTL~d~LL~~~g~i~--~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~ 81 (701)
.++++ -++|+|.+-.||+||.-+||..-.+|= -+|..+| +|.+. |... +|.
T Consensus 219 l~~l~~g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD----------------~vE~~---~~L~-----G~~ 274 (473)
T TIGR00450 219 LEKLKDGFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRD----------------VVEGD---FELN-----GIL 274 (473)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC----------------EEEEE---EEEC-----CEE
T ss_conf 99840894799964788757899998762287055276688320----------------44205---7774-----678
Q ss_pred EEEEECCC---CCCCHHH-----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 99981798---7552899-----999998604569999558888834799999998739978999817676587
Q gi|254780264|r 82 LTIIDTPG---HVDFTME-----VERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 82 iNlIDTPG---H~DF~~E-----v~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
|+++||=| |.|+... ...++.-||-.|.|+|+..+.+.---.++....+.+-|+++|+||+|--+.
T Consensus 275 ~~~lDTAGiR~~~~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~~n 348 (473)
T TIGR00450 275 VKLLDTAGIREHADKVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLAIN 348 (473)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 99851467510200466776899899986057347888747898810589999973217977999735016500
No 157
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.00 E-value=1.2e-08 Score=74.17 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=75.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|--.+|||||+.++. .+.... + --|+....-.+.++ ++..+++-||.|.-.
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~---------~----------~pTig~~~~~~~~~----~~~~l~iwD~~G~e~ 56 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVT---------T----------IPTVGFNVEMLQLE----KHLSLTVWDVGGQEK 56 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC---------C----------CCCCCEEEEEEEEC----CEEEEEEEECCCCCC
T ss_conf 9999999999999999995--698777---------5----------77615038999989----989999997898624
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 289999999860456999955888883-479999999----873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
|..-...-++-+||+|+|+|+..--.. +.+.-|+.+ ...++|++++.||.|.+.
T Consensus 57 ~~~~~~~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 74158877456778999985686788787999999998663537874999998633656
No 158
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=98.98 E-value=5.1e-09 Score=76.63 Aligned_cols=111 Identities=21% Similarity=0.175 Sum_probs=74.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.+++. |.... .|. ..+........+.+. +..+.+++.||||.-+
T Consensus 2 i~vvG~~~vGKTsli~r~~~--~~f~~--------~~~--------~t~~~~~~~~~~~~~---~~~~~~~i~Dt~G~e~ 60 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQ--NKFPE--------EYI--------PTIGVDFYTKTIEVD---GKTVKLQIWDTAGQER 60 (162)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--------CCC--------CCCEEEEEEEEEEEC---CEEEEEEEEECCCCHH
T ss_conf 89999799779999999961--99998--------747--------741355678999999---9999999997898720
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834-799999998---739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-TETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-T~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
|.......++-+|++|+|+|+..--.-. .+..++++. ..++|++++-||+|-
T Consensus 61 ~~~~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl 116 (162)
T pfam00071 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDL 116 (162)
T ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 46788998625765504234898899999999999999857988628899752474
No 159
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.98 E-value=7.5e-09 Score=75.57 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|.++|.-.+|||||+.++.. +... ++. -|+--...++.+...+++...+++-||.|+-
T Consensus 5 kIvilG~~~~GKTsil~r~~~--~~f~------------~~~-------pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe 63 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKF--NEFV------------NTV-------PTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCC------------CCC-------CCCCEEEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 999999999988999999964--9867------------768-------7035578999996167866799999789873
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCH-HHH----HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 5289999999860456999955888883-479----999999873997899981767658
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEP-QTE----TVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~-qT~----~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
-|..-...=.+-+||+|+|+|+..--.. ..+ .+++.....++|++++-||.|...
T Consensus 64 ~~r~l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~ 123 (183)
T cd04152 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred CCCEEHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf 451008767467867899996776889999999999997321237962999986677766
No 160
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.94 E-value=1.6e-08 Score=73.50 Aligned_cols=119 Identities=23% Similarity=0.293 Sum_probs=73.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
+.|-|+|--++|||||.-+|.. |.... |++ ||+.+ ++..+. ..++..++++|.|||
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~--~~~~~--------T~t-----------S~~~n-~~~~~~--~~~~~~~~lvD~PGh 59 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTT--GSVRK--------TVT-----------SQEPS-AAYKYM--NNKGNSLTLIDFPGH 59 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--------EEC-----------CCCCC-CEEEEE--CCCCCEEEEEECCCC
T ss_conf 8699986899989999999975--99487--------588-----------86786-406875--168966899988996
Q ss_pred CCCHHHHHHH---HHHHCEEEEEEECCC--C-CCHHHHHH---HH--HHHHCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 5528999999---986045699995588--8-88347999---99--998739978999817676587555566
Q gi|254780264|r 91 VDFTMEVERS---IRVTDGAIALLDSNA--G-VEPQTETV---WR--QADKYSVPRVIFCNKMDKMGADFYRSV 153 (701)
Q Consensus 91 ~DF~~Ev~~a---L~~~DgailvVDa~e--G-v~~qT~~v---lr--~~~~~~lp~ilvINKiDr~~~d~~~~l 153 (701)
.-+....... ...+.|.|.|||+.. . +..--+.+ +- +..+.++|++++.||.|...+.....+
T Consensus 60 ~klR~~~~~~~~~~~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~~I 133 (181)
T pfam09439 60 VKLRYKLLETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPKKI 133 (181)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 89999999864300264499999978665667999999999998445433689978999737463357799999
No 161
>KOG1423 consensus
Probab=98.91 E-value=1.3e-07 Score=67.70 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=77.2
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
.++-+|++||-...||+||+..|+- ..+.. +. +-+++ -.-........ +++.+-|.||
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig--~kv~~---vS---~K~~T----------Tr~~ilgi~ts----~eTQlvf~DT 127 (379)
T KOG1423 70 QKSLYVAVIGAPNVGKSTLTNQMIG--QKVSA---VS---RKVHT----------TRHRILGIITS----GETQLVFYDT 127 (379)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCC---CC---CCCCC----------EEEEEEEEEEC----CCEEEEEECC
T ss_conf 1578999970897654554457648--72120---11---56653----------02013578715----9658999648
Q ss_pred CCCC------------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCC
Q ss_conf 9875------------528999999986045699995588888347999999987-3997899981767658
Q gi|254780264|r 88 PGHV------------DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK-YSVPRVIFCNKMDKMG 146 (701)
Q Consensus 88 PGH~------------DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~-~~lp~ilvINKiDr~~ 146 (701)
||-+ .|......|+--+|-.++|+||..--..-.-++++.+.. .++|-|||.||+|.+-
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CCCCCCCHHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCH
T ss_conf 764533413567888876537898886388799998556776756807877789986187203304000221
No 162
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.90 E-value=6.9e-08 Score=69.37 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=71.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE--EEEEECCCCCCCEEEEEEECCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407--9999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS--TTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~--~sl~~~~~~~~~~~iNlIDTPG 89 (701)
.|+++|.-..|||||+-+++. +.-. +.. .-||.... -.+.+ ++....+++.||+|
T Consensus 3 KivviGd~~vGKTsli~r~~~--~~f~------------~~~------~~Tig~~~~~k~i~~---~~~~v~l~iwDtaG 59 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVK--NEFS------------ENQ------ESTIGAAFLTQTVNL---DDTTVKFEIWDTAG 59 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCC------------CCC------CCCCCEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 999999599689999999943--9899------------986------886667889999999---99999999997999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr 144 (701)
+-.|..-...-++-+|++|+|.|...--.-+.-.-| +++. ...+|++++-||+|.
T Consensus 60 ~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL 118 (163)
T cd01860 60 QERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 71002788988516771499981899799999999999999855987236775533575
No 163
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.89 E-value=6.6e-08 Score=69.51 Aligned_cols=109 Identities=22% Similarity=0.166 Sum_probs=76.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|--.+||||++.+|. .+.... .. -|+--..-++.++ +..+++-|+.|+--
T Consensus 2 IlilGl~~sGKTtil~~l~--~~~~~~------------~~-------pT~G~~~~~i~~~-----~~~l~iwD~gG~~~ 55 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK--QDEFMQ------------PI-------PTIGFNVETVEYK-----NLKFTIWDVGGKHK 55 (169)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC------------CC-------CCCCCCEEEEEEC-----CEEEEEEECCCCCC
T ss_conf 9999989998899999995--799689------------77-------8688166999989-----88999998999724
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-H----HHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 2899999998604569999558888834-7----99999998739978999817676587
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-T----ETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-T----~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
|..=...=.+-+||+|+|||+..--..+ . ..++......+.|++++.||.|...+
T Consensus 56 ~r~~w~~Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~ 115 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 463678755576279999986306779999999999971275379849999735567779
No 164
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.86 E-value=4e-08 Score=70.89 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
.+-++|-++|--.+||||+..+|. .+.+.. +. -|+.-+.-++.+. +..+++.|.
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~--~~~~~~---------~~----------PT~Gfn~e~i~~~-----~~~~~~wDv 70 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK--DDRLAQ---------HV----------PTLHPTSEELTIG-----NIKFKTFDL 70 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH--CCCCCE---------EC----------CCCCCCEEEEEEC-----CEEEEEEEC
T ss_conf 770489999069998899999980--799531---------52----------6558745999989-----999999989
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 987552899999998604569999558888-834799----99999873997899981767658755556664111102
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTET----VWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~----vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
.|+.-|..--..-..-+||.|.|||+..-- ....+. ++......++|.+++.||.|.+.+ ...+++.+.|+
T Consensus 71 gG~~~~R~lW~~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a---~~~~ei~~~L~ 146 (190)
T cd00879 71 GGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA---VSEEELRQALG 146 (190)
T ss_pred CCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCHHHHHHHCC
T ss_conf 99845554388884311379999977677899999999999985550069808999866677679---89999998839
No 165
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.86 E-value=7.9e-08 Score=68.98 Aligned_cols=109 Identities=25% Similarity=0.250 Sum_probs=73.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE-EEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764-07999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS-ASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s-s~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+|+|.-+.|||||+.+++.. .... . |.- |+.. -...+.+ ++..+.+++.||+|+-
T Consensus 2 i~ivG~~~vGKTsli~r~~~~--~f~~--~------~~p----------Ti~~~~~~~~~~---~~~~~~l~i~Dt~g~~ 58 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG--TFVE--E------YDP----------TIEDSYRKTIVV---DGETYTLDILDTAGQE 58 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCCC--C------CCC----------CEEEEEEEEEEE---CCEEEEEEEEECCCCH
T ss_conf 999996996799999999619--5998--7------788----------300489999997---6699999999799962
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHH----HHCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479-999999----8739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQA----DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~----~~~~lp~ilvINKiDr 144 (701)
+|..-....++-+|++|+|.|+..--.-+.- ..+... ....+|++++-||.|.
T Consensus 59 ~~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl 116 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 3557889997643689997328987899999999999999728788629999974562
No 166
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.83 E-value=3.9e-08 Score=71.00 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|.-..|||||+.+++. |.... + |.-+. |....+. .+.. ++..+.+++.||||+-+
T Consensus 3 ivvvG~~~vGKTsli~r~~~--~~f~~--~------~~~ti------~~~~~~~--~~~~---~~~~~~l~iwDt~g~~~ 61 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD--DTFDP--D------LAATI------GVDFKVK--TLTV---DGKKVKLAIWDTAGQER 61 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CCCCC------CCCCEEE--EEEE---CCEEEEEEEEECCCCCC
T ss_conf 99999799579999999963--99999--8------48731------3342389--9999---99999999999999842
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEECCCCC
Q ss_conf 289999999860456999955888883479999-9998----739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~----~~~lp~ilvINKiDr 144 (701)
|..-....++-+|++|+|.|...--.-+.-.-| ++.. ...+|++++-||.|.
T Consensus 62 ~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~ 118 (161)
T cd01863 62 FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred CCCCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 353422441321534899767826569999999999998568888737887310440
No 167
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=98.80 E-value=1.7e-09 Score=79.74 Aligned_cols=68 Identities=38% Similarity=0.549 Sum_probs=61.5
Q ss_pred CCEEHHHHHCCCCCCCCEEEEE--CCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 7100001101334568368983--2655411104532104744542003567326413874443211012
Q gi|254780264|r 328 GSLTFCRIYSGKISKGDSLLNT--VKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLC 395 (701)
Q Consensus 328 G~~a~~RV~SGtL~~gd~i~~~--~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~ 395 (701)
|+++++||+||+|++||+|++. ...++.+|++++.+++...++++.+.+|+|+++.|++++..||||+
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~~~~~~~~~kV~~l~~~~~~~~~~~~g~~~g~iv~~~~~~~i~~Gdti~ 70 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGLKDIKRGDTLT 70 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEECCCCCCCEEEEEEEEECCCHHHHHCCCCCEEEEEECCCCCCCCCCEEC
T ss_conf 9599999980989659999993699622137718999775512211511000378746704572467949
No 168
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.79 E-value=2.5e-07 Score=65.75 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=70.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+++|....|||||+-+++. +.-.. . |. -|+... ...+.. +++.+.+++.||+|+-
T Consensus 1 ivllGd~~VGKTsli~r~~~--~~f~~--~------y~----------~Ti~~~~~~~~~~---~~~~~~l~i~DtaG~e 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPE--D------YV----------PTVFENYSADVEV---DGKPVELGLWDTAGQE 57 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCEEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 59989789759999999953--98999--8------57----------8505789999999---9999999999489870
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHH---HHCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479-999999---8739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~---~~~~lp~ilvINKiDr 144 (701)
+|..-.....+-+|++|+|.|...--.-+.- ..|... ...++|+||+-||+|.
T Consensus 58 ~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL 114 (174)
T smart00174 58 DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred CCCCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 345450011048868999975898789999999899999986889869999875425
No 169
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=2.2e-07 Score=66.20 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=92.9
Q ss_pred CCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCC---CCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCC
Q ss_conf 656710252799986878897789999999808---73214220179561378088987085376407999960777871
Q gi|254780264|r 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAG---KSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQ 79 (701)
Q Consensus 3 ~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g---~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~ 79 (701)
++|+.+..=-||++|-...||+||+-+|.-..+ ...++|+ |-.- -.|.+.+
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGr-------------------Tq~i--Nff~~~~----- 70 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGR-------------------TQLI--NFFEVDD----- 70 (200)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCC-------------------CCEE--EEEEECC-----
T ss_conf 5689988967999816866689999999678635565799985-------------------4236--7998358-----
Q ss_pred EEEEEEECCCCC-------------CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 389998179875-------------5289999999860456999955888883479999999873997899981767658
Q gi|254780264|r 80 KKLTIIDTPGHV-------------DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 80 ~~iNlIDTPGH~-------------DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
.+.|+|-||+- ++..|=...=.-..+++++||+..++...-+.++..+...++|.++++||+|++.
T Consensus 71 -~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 71 -ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred -CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf -5799817995403289999999999999999635222489999978999868799999999975998699997110377
Q ss_pred -CCHHHHHHHHCCCCCC
Q ss_conf -7555566641111026
Q gi|254780264|r 147 -ADFYRSVEMISSRLGA 162 (701)
Q Consensus 147 -~d~~~~l~~i~~~l~~ 162 (701)
.+....+..+...++.
T Consensus 150 ~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 150 KSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 46788899999998468
No 170
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77 E-value=1.5e-07 Score=67.15 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=83.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|-++|--++||||+..+|.. +.. .+. + .-|+-....++.++ ++.+++-|.+|+..
T Consensus 2 IlilGLd~aGKTTil~~l~~--~~~------~~~--~----------~PT~Gf~~~~i~~~-----~~~l~~wDlgGq~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS--ERS------LES--V----------VPTTGFNSVAIPTQ-----DAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCC------CCC--C----------CCCCCCCEEEEEEC-----CEEEEEEECCCHHH
T ss_conf 99996799989999999816--998------765--3----------56327746999989-----99999985375288
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 2899999998604569999558888-8347999999987--399789998176765875555666411110268
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADK--YSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~--~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
|..--..=.+-+||.|.|||+..-- ....+..++.+.+ .++|.+++-||.|.+.+- ..++|.+.|+.+
T Consensus 57 ~R~~W~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~---s~~ei~~~L~L~ 127 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELE 127 (164)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CHHHHHHHCCCC
T ss_conf 86569987117758999995688889999999999997087998699998632433699---999999866994
No 171
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.76 E-value=9.4e-08 Score=68.51 Aligned_cols=129 Identities=21% Similarity=0.342 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC---CCC
Q ss_conf 68788977899999998087321422017956137808898708537640799996077787138999817987---552
Q gi|254780264|r 17 AHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH---VDF 93 (701)
Q Consensus 17 aHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH---~DF 93 (701)
|..-.|||||--+| ||..-+.|+=- |.|+.-.-..+.++ ++.|.+||.||= .+|
T Consensus 1 GNPNVGKStlFN~L---TG~~~~vGNwP---------------G~TVek~eg~l~~~-----g~~i~ivDLPG~YSL~~~ 57 (733)
T TIGR00437 1 GNPNVGKSTLFNAL---TGANQKVGNWP---------------GVTVEKKEGKLKFQ-----GEDIEIVDLPGIYSLTTF 57 (733)
T ss_pred CCCCCHHHHHHHHH---HCCCEEEEECC---------------CCEEEEEEEEEEEC-----CEEEEEEECCCCCCCCCC
T ss_conf 99981589999874---15870787358---------------87078778897524-----627899844873005899
Q ss_pred HH---HHHHHHH---HHCEEEEEEECCCCCCHHHHHHH---HHHHHCCCCEEEEECCCCCCCCC-HHHHHHHHCCCCCCC
Q ss_conf 89---9999998---60456999955888883479999---99987399789998176765875-555666411110268
Q gi|254780264|r 94 TM---EVERSIR---VTDGAIALLDSNAGVEPQTETVW---RQADKYSVPRVIFCNKMDKMGAD-FYRSVEMISSRLGAN 163 (701)
Q Consensus 94 ~~---Ev~~aL~---~~DgailvVDa~eGv~~qT~~vl---r~~~~~~lp~ilvINKiDr~~~d-~~~~l~~i~~~l~~~ 163 (701)
|+ +|.+.-- ..|-.|-||||. +-|+-| -|+...++|+|+++|++|-.--. .+-..+.++.+||..
T Consensus 58 S~~dE~v~~dyl~~e~~DLv~nVVDA~-----nLERnL~LTLQL~E~G~p~i~~LN~~DeA~k~GI~Id~~~Lee~LGvP 132 (733)
T TIGR00437 58 SGLDEKVARDYLLNEKPDLVVNVVDAS-----NLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP 132 (733)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECHHHHHHHCCCC
T ss_conf 874279998997538996799972566-----777899999999971625856872678997729631257775433865
Q ss_pred CCEECCCCCC
Q ss_conf 3300023455
Q gi|254780264|r 164 PLVIQLPVGS 173 (701)
Q Consensus 164 ~~~~~~p~~~ 173 (701)
+++....-|.
T Consensus 133 Vv~~~A~~g~ 142 (733)
T TIGR00437 133 VVPTSATEGR 142 (733)
T ss_pred EEEEEEEECC
T ss_conf 2565321057
No 172
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.75 E-value=2.7e-07 Score=65.55 Aligned_cols=111 Identities=16% Similarity=0.270 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||+|+-+++... -.. . |.- -=|+++.... +. .+++.+.+++-||||+-.
T Consensus 3 ivllGd~~VGKTsli~r~~~~~--f~~----~----~~~------Tig~~~~~~~--~~---~~~~~~~l~iwDtaG~e~ 61 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG--YEP----Q----QLS------TYALTLYKHN--AK---FEGKTILVDFWDTAGQER 61 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC----C----CCC------CCCEEEEEEE--EE---ECCEEEEEEEEECCCCCC
T ss_conf 9999989967899999998097--799----7----266------5415799999--99---999999999997999843
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHH--HCCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799999-998--739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~~--~~~lp~ilvINKiDr 144 (701)
|..-...-.+-+|++|+|.|...--.-+.-.-|. ++. ...+|++|+-||+|.
T Consensus 62 f~~~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL 116 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 4324699735687679999689778899999999999986869989999997117
No 173
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.75 E-value=1.1e-07 Score=68.04 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407-99996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|....|||||+-+++. +.-.. + |.- |+.... -.+.. +++...+++.||+|+
T Consensus 2 KvvlvGd~~VGKTsli~r~~~--~~F~~--~------y~p----------Ti~~~~~~~~~~---~~~~v~l~iwDtaG~ 58 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY--DEFVE--D------YEP----------TKADSYRKKVVL---DGEDVQLNILDTAGQ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CCC----------CCCCEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 799999999889999999971--98987--7------488----------544168999999---999999999989886
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
-+|..-...-++-+|++|+|.|...--.-+. ...|++.. ..++|++|+-||+|.
T Consensus 59 e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL 117 (164)
T cd04139 59 EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL 117 (164)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHH
T ss_conf 62488999988637688999977977889999999999998608788636987330323
No 174
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.74 E-value=9.3e-08 Score=68.54 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|+++|..+.|||||+.+++. |.... + |.. |+.....+-.+. .++..+.+++.||||+-
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~--~~f~~--~------~~~----------ti~~~~~~k~i~-~~~~~~~l~iwDt~G~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVE--NKFNE--K------HES----------TTQASFFQKTVN-IGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CCC----------CCEEEEEEEEEE-ECCEEEEEEEEECCCCC
T ss_conf 899999999679999999983--98998--7------677----------526479999999-99999999999589973
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHH---HHHHHHCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-999---99998739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETV---WRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~v---lr~~~~~~lp~ilvINKiDr 144 (701)
+|..-...-++-+|+.++|.|...--.-+. +.. ++.....++|++++-||.|-
T Consensus 61 ~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl 117 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred CCCCCCHHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 035563133011445799963899899999999999999876999746866332132
No 175
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.74 E-value=3.1e-07 Score=65.14 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=74.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.++....+.... .| -.|+......-...-.+++...+++.||+|.-.
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~--------~y----------~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~ 64 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPK--------NY----------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC--------CC----------CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 999995995889999999978886688--------88----------886457889999997899799999997999840
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-H--HHCCCCEEEEECCCCC
Q ss_conf 28999999986045699995588888347999999-9--8739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ-A--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~-~--~~~~lp~ilvINKiDr 144 (701)
|..-...-++-+|++|+|.|...--.-+.-.-|.+ + ...++|.+|+-||+|.
T Consensus 65 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL 119 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 0678999976426899997077466899999999999976689868999872244
No 176
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.73 E-value=2e-07 Score=66.38 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=70.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|.-..|||||+.+++. +.... . |.- -|........+.+. +..+.+++.||||.-
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~--~~f~~--~------~~~--------Tig~d~~~~~~~~~---~~~~~l~iwDt~G~e 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD--GKFDE--N------YKS--------TIGVDFKSKTIEID---GKTVKLQIWDTAGQE 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CCC--------CCCEEEEEEEEEEC---CEEEEEEEEECCCCH
T ss_conf 899999699689999999970--99999--8------488--------66647999999999---999999999789826
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 52899999998604569999558888834-799999998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQ-TETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~q-T~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
.|..-...-++-+|++|+|.|...--.-. .+..++++. ..++|++++-||+|.
T Consensus 61 ~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL 117 (159)
T cd00154 61 RFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 577889999754127567244898899999999999999868988826999974563
No 177
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.73 E-value=3.3e-07 Score=65.04 Aligned_cols=109 Identities=24% Similarity=0.235 Sum_probs=71.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640--799996077787138999817987
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|+++|....|||+|+.+++. +.-.. . |. -||... ...+.. +++.+.+++.||+|+
T Consensus 3 ivlvGd~~VGKTsli~r~~~--~~f~~--~------y~----------~Tig~d~~~k~i~~---~~~~~~l~iwDtaG~ 59 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVN--KKFSN--Q------YK----------ATIGADFLTKEVTV---DDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--C------CC----------CCCCEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 99999899789999999952--98898--7------57----------75551699999999---999999999969998
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-----HHHHH---CCCCEEEEECCCCC
Q ss_conf 55289999999860456999955888883479999-----99987---39978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-----RQADK---YSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-----r~~~~---~~lp~ilvINKiDr 144 (701)
-.|..-.....+-+|++|+|.|...--.-+.-.-| +++.. ..+|++|+-||+|.
T Consensus 60 e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl 121 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCH
T ss_conf 31106889986527579999338998999999999999999727677657638999633683
No 178
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.72 E-value=1.2e-07 Score=67.83 Aligned_cols=115 Identities=23% Similarity=0.197 Sum_probs=76.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
.+=-|+++|.-..|||+|+-+++.. .-.. .|. -|+.....+-.+. .+++.+.+++.||+
T Consensus 4 ~~~KivvlGd~~VGKTsli~r~~~~--~f~~--------~~~----------~Tig~~~~~k~i~-~~~~~v~l~iwDta 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KFDT--------QLF----------HTIGVEFLNKDLE-VDGHFVTLQIWDTA 62 (170)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHC--CCCC--------CCC----------CCCEEEEEEEEEE-ECCEEEEEEEEECC
T ss_conf 0899999999997899999999739--8999--------888----------8760798999999-99999999999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-----HH---HCCCCEEEEECCCCC
Q ss_conf 875528999999986045699995588888347999999-----98---739978999817676
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ-----AD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~-----~~---~~~lp~ilvINKiDr 144 (701)
|+-+|..-.....+-+|++|+|.|...--.-+.-..|.. +. ..++|++|+-||+|.
T Consensus 63 G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl 126 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI 126 (170)
T ss_pred CCCCCCCCHHHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
T ss_conf 9724352417660047733999978887999999999999999714457888409999611113
No 179
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.72 E-value=2.7e-07 Score=65.56 Aligned_cols=111 Identities=22% Similarity=0.206 Sum_probs=74.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||+|+-+++.. .-.. .|-.+..+ ..+. .+.+ ++..+.+++.||+|.-.
T Consensus 2 IvvlGd~~VGKTSLi~rf~~~--~F~~--------~y~~Ti~~-------~~~k--~~~v---~~~~v~l~i~DtaG~e~ 59 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYD--TFEP--------KYRRTVEE-------MHRK--EYEV---GGVSLTLDILDTSGSYS 59 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCCC--------CCCCCHHH-------EEEE--EEEE---CCEEEEEEEEECCCCCC
T ss_conf 899998997799999999859--8998--------88887254-------1889--9998---99799999997877513
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEECCCCCC
Q ss_conf 289999999860456999955888883479999-9998----7399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD----KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~----~~~lp~ilvINKiDr~ 145 (701)
|..-....++-+|++|+|-|...--.-+.-.-| +.+. ...+|+|||-||+|.+
T Consensus 60 ~~~l~~~~~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll 117 (198)
T cd04147 60 FPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred CHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 0145555415886689996169779999999999999996288898289998787650
No 180
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.72 E-value=1.4e-07 Score=67.31 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=71.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|.-..|||||+.+++. |.... + |. + .-|+...+ -.+.+ ++..+.+++.||+|+-
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~--~~f~~--~------~~---~---Ti~~~~~~--~~i~~---~~~~~~l~iwDt~G~e 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD--GKFSE--Q------YK---S---TIGVDFKT--KTIEV---DGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CC---C---CCCEEEEE--EEEEE---CCEEEEEEEEECCCCH
T ss_conf 899999899779999999941--99999--8------68---8---45666677--99999---9999999999679944
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr 144 (701)
+|..-...-.+-+|++|+|.|...--.-+.-.-| ..+. ..++|++++-||+|.
T Consensus 61 ~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl 117 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCH
T ss_conf 664779988336653688436899899999999999999867999825511645685
No 181
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.71 E-value=2.2e-07 Score=66.08 Aligned_cols=111 Identities=23% Similarity=0.212 Sum_probs=73.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE-EEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 799986878897789999999808732142201795613780889870853764-0799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS-ASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s-s~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|....|||||+.+++. +.... + |.- |+.- -...+.. +++.+.+++.||+|+
T Consensus 2 Ki~llGd~~VGKTsli~r~~~--~~f~~--~------y~~----------Ti~~~~~~~~~~---~~~~~~l~iwDt~G~ 58 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTT--GKFPT--E------YVP----------TVFDNYSATVTV---DGKQVNLGLWDTAGQ 58 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCC----------EEEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 899999999669999999962--99998--7------588----------034666899999---999999999989987
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-H--HHCCCCEEEEECCCCCC
Q ss_conf 5528999999986045699995588888347-999999-9--87399789998176765
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-A--DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~--~~~~lp~ilvINKiDr~ 145 (701)
-+|..-....++-+|++|+|.|...--.-+. +..|.. + ...++|+||+-||+|..
T Consensus 59 e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~ 117 (171)
T cd00157 59 EEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred CCCCCCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 10241322344426589999968977889999999999999859998689999871001
No 182
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.71 E-value=2.1e-07 Score=66.31 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=78.9
Q ss_pred CCCCHH-HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCE
Q ss_conf 656710-2527999868788977899999998087321422017956137808898708537640-79999607778713
Q gi|254780264|r 3 RKCKIE-DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQK 80 (701)
Q Consensus 3 ~~~~~e-~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~ 80 (701)
+-..++ +.+++.|.|+..-||+||.-++- ++-- +|.. | -.|-|+= .=+|.+ +..
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT---~Akp---EvA~---Y----------PFTTK~i~vGhfe~-----~~~ 215 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLT---TAKP---EVAP---Y----------PFTTKGIHVGHFER-----GYL 215 (346)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHH---CCCC---CCCC---C----------CCCCCCEEEEEEEC-----CCC
T ss_conf 088779999738985699875899998875---4897---6678---8----------85336546765504-----870
Q ss_pred EEEEEECCCCCCCHH--------HHHHHHHHHCEEEE-EEECCC----CCCHHHHHHHHHHH-HCCCCEEEEECCCCCCC
Q ss_conf 899981798755289--------99999986045699-995588----88834799999998-73997899981767658
Q gi|254780264|r 81 KLTIIDTPGHVDFTM--------EVERSIRVTDGAIA-LLDSNA----GVEPQTETVWRQAD-KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~--------Ev~~aL~~~Dgail-vVDa~e----Gv~~qT~~vlr~~~-~~~lp~ilvINKiDr~~ 146 (701)
.|.+|||||-.|=-- ....||+-.+|+|| ++|..| +++.| ..+|++.. ..+.|+++|+||+|...
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred EEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 58984288645788577368999999999974285899976850028999999-99999999853887699974101246
Q ss_pred CC
Q ss_conf 75
Q gi|254780264|r 147 AD 148 (701)
Q Consensus 147 ~d 148 (701)
.+
T Consensus 295 ~e 296 (346)
T COG1084 295 EE 296 (346)
T ss_pred HH
T ss_conf 66
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.68 E-value=2.3e-07 Score=65.98 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=74.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|=|+++|....|||+|+-+++. +.-.. .|.-+..+. . +. .+.+ ++..+.+++.||+|+
T Consensus 2 ~KIvlvGd~~VGKTsli~r~~~--~~f~~--------~y~~Ti~~~------~-~k--~i~~---~~~~~~l~iwDtaG~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE--GHFVE--------SYYPTIENT------F-SK--IIRY---KGQDYHLEIVDTAGQ 59 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCCCCC------C-CE--EEEE---CCEEEEEEEEECCCC
T ss_conf 8899999899889999999970--97899--------858812441------1-37--9999---999999999989987
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH----HHHCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-999999----98739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ----ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~----~~~~~lp~ilvINKiDr 144 (701)
-+|..-...-.+-+||+|+|.|...--.-+. +..|.. ....++|++|+-||+|.
T Consensus 60 e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL 118 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred CCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 01006679998635578999743887889999999999999758888867977653462
No 184
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.67 E-value=5.1e-07 Score=63.81 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=72.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+++|....|||||+-+++. |.... + |. -|+... .-.+.+ +++.+.+++.||+|+-
T Consensus 3 iv~vGd~~vGKTsli~r~~~--~~f~~--~------y~----------~Ti~~~~~k~i~~---~~~~~~l~iwDt~G~e 59 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ--GHFVD--D------YD----------PTIEDSYRKQIEI---DGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCEEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 99999999789999999972--97998--7------78----------8136789999999---9999999999899971
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
+|..-...-++-+|++|+|.|...--.-+. +..+++.. ..++|++|+-||+|.
T Consensus 60 ~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL 117 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred CHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 0356777753798779998307988999999999999998618888866877753463
No 185
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.67 E-value=6.9e-07 Score=62.96 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=73.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.+++. |.-.. .|.-+ -|..... -++.+. +....+++.||+|+.+
T Consensus 3 ivvvG~~~vGKTSLi~r~~~--~~f~~--------~y~pT------ig~~~~~--k~~~~~---~~~~~l~iwDt~G~~~ 61 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCE--GRFVS--------KYLPT------IGIDYGV--KKVSVR---NKEVRVNFFDLSGHPE 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCC------CCEEEEE--EEEEEC---CEEEEEEEEECCCCHH
T ss_conf 99999599568999999963--99999--------85897------6557779--999999---9999999998999764
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHH-HHHHHHH--------CCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799-9999987--------39978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTET-VWRQADK--------YSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~-vlr~~~~--------~~lp~ilvINKiDr 144 (701)
|..-...-++-+|++|+|.|+..--.-+.-. -++++.+ .++|++|+=||+|.
T Consensus 62 ~~~~~~~~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 122 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 7899999987477889995089744489999999999998245345668629998540344
No 186
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.67 E-value=2.6e-07 Score=65.66 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=73.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|.-..|||||+.+++. +.-.. .|..+. |+...+. .+.+ +++...+++.||+|+-
T Consensus 4 Kiv~vGd~~vGKTsli~r~~~--~~f~~--------~y~~Ti------g~~~~~~--~i~~---~~~~~~l~iwDtaG~e 62 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFAD--DTYTE--------SYISTI------GVDFKIR--TIEL---DGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCC------CEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf 999999999789999999943--99998--------747854------4048999--9999---9999999999899982
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
.|..-...-++-+|++|+|.|...--.-+.-.-| +.+ ...++|++++-||+|.
T Consensus 63 ~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL 119 (166)
T cd01869 63 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred CCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 346267888563267799711799899999999999999867877744886132011
No 187
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=4.2e-07 Score=64.36 Aligned_cols=111 Identities=22% Similarity=0.300 Sum_probs=74.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEE--EEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 9998687889778999999980873214220179561378088987085376--40799996077787138999817987
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT--SASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~--ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|.++|.-..|||+|+-+++. +.-.. . |. -||- ...-.+.+. ++....+++-||+|+
T Consensus 3 vvllGd~gVGKTsLi~rf~~--~~F~~----~----y~----------~Tig~df~~k~i~~~--~~~~v~l~iwDtaGq 60 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH--GIFSQ----H----YK----------ATIGVDFALKVIEWD--PNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CCCCEEEEEEEEEEC--CCEEEEEEEEECCCC
T ss_conf 99999999789999999982--99999----8----88----------875677899899967--981999999868998
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-H-------HHCCCCEEEEECCCCCC
Q ss_conf 5528999999986045699995588888347999999-9-------87399789998176765
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ-A-------DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~-~-------~~~~lp~ilvINKiDr~ 145 (701)
-+|..-...-.+-+||+|||.|...--.-+.-.-|+. + ....+|++||-||+|..
T Consensus 61 e~~~~l~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CCCCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 322200375555776479998279889999899999999998621378987189986655641
No 188
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.67 E-value=4.9e-07 Score=63.88 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=73.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEE-EEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376-40799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT-SASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~-ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|....|||||+.+++. |.-.. .|.- |+. ...-.+.. ++....+++.||+|+
T Consensus 3 KivllGd~~VGKTsli~r~~~--~~f~~--------~y~p----------Ti~~~~~k~i~~---~~~~~~l~iwDtaG~ 59 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIE--------KYDP----------TIEDFYRKEIEV---DSSPSVLEILDTAGT 59 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCC----------CCCCEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 999989999789999999970--98997--------5588----------523316799998---889999999989885
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 55289999999860456999955888883479-9999998----739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~~----~~~lp~ilvINKiDr 144 (701)
-.|..-...-++-+|++|+|.|...--.-+.- ..|++.. ..++|+|||-||.|.
T Consensus 60 e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL 118 (163)
T cd04176 60 EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 42567889985578656897127988999999999999999738999639997431340
No 189
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.67 E-value=1.2e-07 Score=67.78 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=75.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407-99996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|....|||||+.+++. +.-.. + |.- |+.... -.+. .+++...+++.||+|+
T Consensus 4 Kiv~lGd~~VGKTsli~r~~~--~~f~~--~------y~~----------Ti~~~~~k~~~---~~~~~~~l~iwDtaG~ 60 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQ--SYFVT--D------YDP----------TIEDSYTKQCE---IDGQWAILDILDTAGQ 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCC----------CEEEEEEEEEE---ECCEEEEEEEEECCCC
T ss_conf 999999999788999999980--98987--5------678----------41358999999---9999999999989886
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
-+|..-....++-+|++|+|.|...--.-+. +..|.+.. ..++|++|+-||+|.
T Consensus 61 e~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL 119 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCH
T ss_conf 03125679873467874689856735439999999999998618877752653034573
No 190
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.67 E-value=6e-07 Score=63.34 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
=|+++|..+.|||||+-++.. |.-.. .|. -||......- ....++....+++.||+|+-
T Consensus 2 KivlvGd~~VGKTsli~r~~~--~~F~~--------~~~----------pTi~~~~~~~-~~~~~~~~v~l~iwDtaG~e 60 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQ--GKFPE--------EYV----------PTVFENYVTN-IQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCC----------CCEEEEEEEE-EEEECCEEEEEEEEECCCCC
T ss_conf 899999499769999999963--98999--------758----------9664799999-99549989999999699971
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH-HH--HCCCCEEEEECCCCCC
Q ss_conf 5289999999860456999955888883479-99999-98--7399789998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ-AD--KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~-~~--~~~lp~ilvINKiDr~ 145 (701)
+|..-.....+-+|++|||.|...--.-+-- ..|-. +. ..++|+|||-||.|..
T Consensus 61 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~ 118 (187)
T cd04132 61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred CCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 1053434453003488895036876779999999999999868999979999872212
No 191
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.67 E-value=5.7e-07 Score=63.47 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|..+.|||||+-+++. |.-. +..+ -|+....+.... +++...+++.||+|.-+
T Consensus 3 iv~vGd~~VGKTsli~r~~~--~~F~------------~~~~------~t~~~~~~~~~~---~~~~v~l~i~DtaG~e~ 59 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVS--EEFP------------ENVP------RVLPEITIPADV---TPERVPTTIVDTSSRPQ 59 (166)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCC------------CCCC------CCCCCEEEEEEE---CCEEEEEEEEECCCCCC
T ss_conf 99999999899999999984--9788------------8777------634568999998---89099999998998723
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH---HHHCCCCEEEEECCCCC
Q ss_conf 289999999860456999955888883479-99999---98739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ---ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~---~~~~~lp~ilvINKiDr 144 (701)
|..-.....+-+|++|+|.|...--.-+-- .-|.. ....++|+||+-||+|.
T Consensus 60 ~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL 115 (166)
T cd01893 60 DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 02457987368988999970898778999999999999986899968999988654
No 192
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.67 E-value=1.5e-07 Score=67.24 Aligned_cols=110 Identities=23% Similarity=0.287 Sum_probs=73.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE-EEEECCCCCCCEEEEEEECCCC
Q ss_conf 799986878897789999999808732142201795613780889870853764079-9996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~-sl~~~~~~~~~~~iNlIDTPGH 90 (701)
.|+++|....|||||+-+++.. .-.. + |-. ||..... .+.. ++..+.+++.||+|+
T Consensus 3 KvvlvGd~~VGKTsli~r~~~~--~F~~--~------y~~----------Ti~~~~~k~~~i---~~~~~~l~iwDtaG~ 59 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN--HFVD--E------YDP----------TIEDSYRKQVVI---DGETCLLDILDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHC--CCCC--C------CCC----------CCCCEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 9999899998899999999839--2887--5------688----------555279999999---999999999979986
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
-+|..-...-++-+|++|+|.|...--.-+. +..++++. ..++|++|+-||+|.
T Consensus 60 e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl 118 (162)
T cd04138 60 EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred CCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCH
T ss_conf 01114789871578779999617988999989999999998548888549999765356
No 193
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.66 E-value=3.7e-07 Score=64.68 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=73.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|....|||||+.+++. +.-.. .|.-+ -|+..... .+.. +++...+++.||+|+-
T Consensus 5 KivlvGd~~vGKTsli~r~~~--~~f~~--------~~~~T------ig~~~~~k--~v~~---~~~~i~l~iwDt~G~e 63 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSE--DSFNP--------SFIST------IGIDFKIR--TIEL---DGKKIKLQIWDTAGQE 63 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCC------CCEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf 999999999788999999960--99999--------86898------64688999--9999---9999999999899970
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr 144 (701)
.|..-...-++-+|++|+|.|...--.-+.-.-| +.+. ..++|++++-||.|.
T Consensus 64 ~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl 120 (167)
T cd01867 64 RFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 011667998565058899556898799999999999999866999705764212450
No 194
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.66 E-value=4.2e-07 Score=64.36 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=72.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE--EEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 799986878897789999999808732142201795613780889870853764--079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS--ASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s--s~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-|+++|.-..|||||+.+++. |.-.. ++ --||.. ..-++.+ +++...+++.||+|
T Consensus 5 Kiv~iGd~~VGKTsli~r~~~--~~f~~-----------~~-------~~Tig~~~~~k~i~~---~~~~~~l~iwDtaG 61 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR--NEFNL-----------DS-------KSTIGVEFATRSIQI---DGKTIKAQIWDTAG 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC-----------CC-------CCCCCEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 999999999789999999972--98999-----------88-------987447878999999---99999999998999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479999----9998739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW----RQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl----r~~~~~~lp~ilvINKiDr 144 (701)
.-.|..=...-.+-+|++|+|.|...--.-+--.-| +.....++|++|+-||+|.
T Consensus 62 ~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL 120 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 72126789987332051489862698899999999999999855577359870234786
No 195
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.65 E-value=5.5e-07 Score=63.60 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|.-..|||||+.+++...- .. +. +.. ..+.+.....+. .+++.+.+++.||+|+-.
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f--~~--~~-----~~~------~~~~~~~~~~~~-----~~~~~~~l~i~Dt~g~~~ 61 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEF--PP--EI-----PEE------IQGDTLAVDTLE-----VDGDTELLHIWDFGGREE 61 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC--CC--CC-----CCC------CCCCEEEEEEEE-----ECCCEEEEEEEECCCCHH
T ss_conf 99999899789999999983988--87--66-----678------777768889999-----999289999998999677
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH---HH--HCCCCEEEEECCCC
Q ss_conf 28999999986045699995588888347-999999---98--73997899981767
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ---AD--KYSVPRVIFCNKMD 143 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~---~~--~~~lp~ilvINKiD 143 (701)
|.......++-+|++|+|.|...--.-+. +..+++ +. ..++|+||+=||.|
T Consensus 62 ~~~~~~~~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 62 LKFEHIIFMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 766665422587467899979987899999999999999982099998899996859
No 196
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.63 E-value=4.2e-07 Score=64.33 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|.++|....|||+|+.++.. +.-. .++ |.-+ -|+......+.. ++....+++.||+|.-
T Consensus 2 KIv~vGd~~VGKTsli~r~~~--~~f~-~~~------~~~T------i~~~~~~k~~~~-----~~~~v~l~iwDtaG~e 61 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKD--GAFL-NGN------FIAT------VGIDFRNKVVTV-----DGVKVKLQIWDTAGQE 61 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCC-CCC------CCCC------CCEEEEEEEEEE-----CCEEEEEEEEECCCCC
T ss_conf 899999499879999999995--9789-998------6776------524779999999-----9999999999799863
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
+|..-.....+-+|++|+|.|...--.-+--.-| ..+ ...++|++|+-||.|.
T Consensus 62 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL 118 (191)
T cd04112 62 RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADM 118 (191)
T ss_pred CCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 346464777117777899972798899999999999999866678538986124655
No 197
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.62 E-value=8e-07 Score=62.55 Aligned_cols=110 Identities=23% Similarity=0.232 Sum_probs=75.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407-99996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|.-..|||+|+-+++. |.-.. + |. -|+...- -.+.+ +++.+.+++.||+|+
T Consensus 3 KIvllGd~~VGKTsli~r~~~--~~f~~--~------y~----------pTi~~~~~k~i~~---~~~~~~l~iwDtaG~ 59 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVE--K------YD----------PTIEDSYRKQVEV---DGQQCMLEILDTAGT 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCEEEEEEEEEEE---CCEEEEEEECCCCCC
T ss_conf 999989999759999999970--92886--5------68----------8404689999999---999999985147754
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
-.|..-...-++-+||+|+|.|...--.-+. +..|++.. ..++|++|+-||+|.
T Consensus 60 e~~~~l~~~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL 118 (164)
T cd04175 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 118 (164)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 32456788873578689999607877789999999999998628999639985214572
No 198
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.62 E-value=5.6e-07 Score=63.54 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=75.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|....|||+|+.++.. +.-.. .|..+ -|+..++..+ .+ +++...+++-||+|+-.
T Consensus 3 IvllGd~gVGKTsLi~rf~~--~~F~~--------~y~~T------ig~d~~~k~i--~~---~~~~v~l~IWDTaGqe~ 61 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTD--DTFCE--------ACKSG------VGVDFKIKTV--EL---RGKKIRLQIWDTAGQER 61 (202)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCC------CCEEEEEEEE--EE---CCEEEEEEEEECCCCCC
T ss_conf 99999799729999999954--99999--------87997------6468899999--99---99999999997988612
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH----HHHHCCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799999----998739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR----QADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr----~~~~~~lp~ilvINKiDr 144 (701)
|.+-+..-.+-+||+|||.|...--.-..-.-|. .....++|++||=||+|.
T Consensus 62 f~sl~~~yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL 117 (202)
T cd04120 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred CCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 45235788764144589985688899999999999999746688718987653650
No 199
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.62 E-value=9.3e-07 Score=62.13 Aligned_cols=109 Identities=25% Similarity=0.280 Sum_probs=73.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE-EEEECCCCCCCEEEEEEECCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079-99960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~-sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+++|....|||+|+-+++. +.-.. . |. -||..... .+.+ +++.+.+++.||.|+-
T Consensus 2 ivviGd~gVGKTsli~r~~~--~~F~~--~------y~----------pTi~~~~~k~~~~---~~~~~~l~iwDtaG~e 58 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCL--NHFVE--T------YD----------PTIEDSYRKQVVV---DGQPCMLEVLDTAGQE 58 (190)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCCCEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 89999899878999999962--97998--8------69----------9724788999999---9999999999899973
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEEECCCCC
Q ss_conf 52899999998604569999558888834799999-99---8---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA---D---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~---~---~~~lp~ilvINKiDr 144 (701)
.|..-...-+|-+|++|||.|...--.-+.-.-|. .+ . ..++|++||=||+|.
T Consensus 59 ~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl 118 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
T ss_conf 116788998236765899972797789999999999999985337999528951455350
No 200
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.61 E-value=7.1e-07 Score=62.89 Aligned_cols=109 Identities=24% Similarity=0.221 Sum_probs=73.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEE-EEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 9998687889778999999980873214220179561378088987085376-407999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT-SASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~-ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+++|....|||||+-+++. |.-.. + |.- |+. ...-.+.+ +++.+.+++.||+|+-
T Consensus 4 ivllGd~~VGKTsli~r~~~--~~f~~--~------y~~----------Ti~~~~~k~i~~---~~~~~~l~iwDtaG~e 60 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQ--GIFVE--K------YDP----------TIEDSYRKQIEV---DGQQCMLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CCC----------CCCCEEEEEEEE---CCEEEEEEECCCCCCH
T ss_conf 99989999889999999971--95988--6------699----------542069999999---9999999864576544
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479-9999998----739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~~----~~~lp~ilvINKiDr 144 (701)
+|..-...-++-+||+|+|.|...--.-+.- ..++... ..++|++|+-||+|.
T Consensus 61 ~~~~~~~~y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl 118 (163)
T cd04136 61 QFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 5556789883468769997048988999999999999998618888867876235472
No 201
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.61 E-value=5.7e-07 Score=63.46 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=74.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEEECCC
Q ss_conf 7999868788977899999998087321422017956137808898708537640--79999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-|.++|....|||+|+-+++. +.-.. +...|+... .-.+.. +++...+++.||+|
T Consensus 6 KivlvGd~~VGKTsli~r~~~--~~f~~------------------~~~~Tig~~~~~k~i~~---~~~~~~l~iwDt~G 62 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTD--KRFQP------------------VHDLTIGVEFGARMITI---DGKQIKLQIWDTAG 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC------------------CCCCCCEEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 999999899788999999910--98999------------------87898507889999999---99999999997999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 75528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
+-.|..-...-++-+|++|+|.|...--.-+. ..-++.+. ..++|++|+=||+|.
T Consensus 63 ~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL 121 (168)
T cd01866 63 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred CCCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 73346255888664368999344587799999999999999867999659984342354
No 202
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.61 E-value=1e-06 Score=61.90 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-+=.|.+||.-..|||+|+.++.. |.-.. . |.- .-|....+..+. . +++...++|.||+
T Consensus 5 y~~KivllGd~~VGKTsl~~r~~~--~~f~~------~--y~~------Tig~~~~~k~~~--~---~~~~v~l~iwDta 63 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTES------P--YGY------NMGIDYKTTTIL--L---DGRRVKLQLWDTS 63 (189)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHC--CCCCC------C--CCC------CCCEEEEEEEEE--E---CCEEEEEEEECCC
T ss_conf 899999999899789999999974--99789------8--687------653798999999--9---9999999998178
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf 8755289999999860456999955888883479999-9998--739978999817676
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~--~~~lp~ilvINKiDr 144 (701)
|+-.|.+=...-.+-+||+|||.|...--.-+.-.-| +++. ..++|++|+-||+|.
T Consensus 64 Gqe~f~~l~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL 122 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 86221167898866337048982279889999999999999997689878996132550
No 203
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.61 E-value=8.5e-07 Score=62.36 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=73.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|..+.|||||+-+++... -.. + |.-+ -|+...+.. +.+ ++....+++.||+|--.
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~--f~~--~------~~~t------ig~d~~~k~--v~~---~~~~~~l~i~D~~g~e~ 61 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT--FDN--Q------YQAT------IGIDFLSKT--MYL---EDKTVRLQLWDTAGQER 61 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCCC------CCEEEEEEE--EEE---CCEEEEEEEEECCCCHH
T ss_conf 9999979978999999993199--999--8------4897------567889999--999---99999999997998531
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 28999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
|..-....++-+|++|+|.|...--.-+. +..++++. ....|+++|-||+|.
T Consensus 62 ~~~~~~~~~~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl 117 (161)
T cd01861 62 FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred HHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 57888988665258999984799899999999999999865789849996102110
No 204
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.61 E-value=1.6e-07 Score=67.06 Aligned_cols=111 Identities=23% Similarity=0.228 Sum_probs=74.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|....|||||+-+++. |.-.. .|.-+..+ +. ... +.. +++.+.+++.||+|.-
T Consensus 3 KivlvGd~~VGKTsli~rf~~--~~f~~--------~y~pTi~~------~~-~k~--i~i---~~~~~~l~iwDtaG~e 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQ--NVFIE--------SYDPTIED------SY-RKQ--VEI---DGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCCCCC------EE-EEE--EEE---CCEEEEEEEEECCCCC
T ss_conf 999989999779999999961--93898--------65883331------59-999--999---9999999998278862
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
.|..-...-++-+||+|+|.|...--.-+. +..|+++. ..++|++|+-||.|.
T Consensus 61 ~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL 118 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 3334515451268667985368988899999999999998517888748988731461
No 205
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=98.61 E-value=6e-07 Score=63.35 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=74.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEEECCC
Q ss_conf 7999868788977899999998087321422017956137808898708537640--79999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-|.++|....|||+|+-+++. |.-.. . |. -||... ...+.. +++...+++-||+|
T Consensus 8 KIvllGd~~VGKTsLi~r~~~--~~F~~------~--y~----------pTig~d~~~~~~~~---~~~~i~l~IwDTaG 64 (209)
T PTZ00132 8 KLILVGDGGVGKTTFVKRHLT--GEFEK------K--YI----------ATLGVEVHPLKFYT---NRGKICFNVWDTAG 64 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC------C--CC----------CCCCEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 999999999678999999971--99699------8--77----------76027989999999---99999999998999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479999-9998--739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~--~~~lp~ilvINKiDr 144 (701)
+-.|.+=...-.|-++|+|+|.|...--.-.--.-| +.+. ..++|++|+=||+|.
T Consensus 65 qe~f~sl~~~yyr~a~~~ilVfDit~~~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL 122 (209)
T PTZ00132 65 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDITRVCENIPIVLVGNKVDV 122 (209)
T ss_pred CCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 7445566514424898899984378878999999999999986899878999762322
No 206
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.60 E-value=6.3e-07 Score=63.22 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=72.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCC-------CCCCEEEE
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077-------78713899
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGR-------DGGQKKLT 83 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~-------~~~~~~iN 83 (701)
=-|+++|....|||||+-+++. |.-.. + |.-+ -|+......+ .+... .+....++
T Consensus 5 ~KivvvGd~~VGKTsli~r~~~--~~f~~--~------y~~T------ig~~~~~k~i--~~~~~~~~~~~~~~~~v~l~ 66 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTD--NKFNP--K------FITT------VGIDFREKRV--VYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCCC------CCEEEEEEEE--EECCCCCCCCCCCCCEEEEE
T ss_conf 8999999999888999999961--95899--8------6884------3226889999--98476554445788589999
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEECCCCC
Q ss_conf 981798755289999999860456999955888883479999-9998----739978999817676
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~----~~~lp~ilvINKiDr 144 (701)
+.||+|+-.|..-...-++-+||+|+|.|...--.-.--.-| .++. ..+.|++||-||+|.
T Consensus 67 iwDtaGqe~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL 132 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEECCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCH
T ss_conf 998988630478889998754365899968988999989999999998546689857875032366
No 207
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.60 E-value=1.9e-08 Score=72.99 Aligned_cols=79 Identities=34% Similarity=0.508 Sum_probs=67.0
Q ss_pred CCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCC--CC
Q ss_conf 4201033211654671000011013345683689832--6554111045321047445420035673264138744--43
Q gi|254780264|r 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKE--TT 389 (701)
Q Consensus 314 l~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~--~~ 389 (701)
+.++++++..+++.|+++++||++|+|++||.+.+.. ...+.+|++++.++ .+++++.||++|++.+.+. ..
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~v~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CEEEEEEEEEECCCEEEEEEEECCCEEECCCEEEEECCCCCEEEEEEEEEEEC----CCCCEECCCCEEEEEECCHHHCC
T ss_conf 91299999991896899999993429989999999709963899998999922----37779848989999971635347
Q ss_pred CCCCCCC
Q ss_conf 2110127
Q gi|254780264|r 390 TGDTLCD 396 (701)
Q Consensus 390 ~gdTl~~ 396 (701)
+||+++.
T Consensus 77 ~gd~~~~ 83 (83)
T cd01342 77 IGDTLTD 83 (83)
T ss_pred CCCEECC
T ss_conf 9989829
No 208
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.60 E-value=1.1e-06 Score=61.55 Aligned_cols=109 Identities=23% Similarity=0.269 Sum_probs=72.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640--799996077787138999817987
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|+++|....|||+|+-+++. |.-.. . |. -||... ...+.. +++...+++-||+|.
T Consensus 3 ivlvGd~~VGKTsli~r~~~--~~f~~----~----~~----------~Tig~~~~~~~~~~---~~~~v~l~iwDtaGq 59 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLT--GEFEK----K----YV----------ATLGVEVHPLDFHT---NRGKIRFNVWDTAGQ 59 (166)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CCCCEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 99999999888999999983--99999----8----68----------73255679999999---997999999975787
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH--HHCCCCEEEEECCCCC
Q ss_conf 55289999999860456999955888883479999-999--8739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~--~~~~lp~ilvINKiDr 144 (701)
-.|..=...-.+-+||+|+|.|...--.-+.-.-| +++ ...++|++|+-||+|.
T Consensus 60 e~~~~l~~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl 116 (166)
T cd00877 60 EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 156668788740065799843789888999999999999986899989999986217
No 209
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.59 E-value=3.6e-07 Score=64.75 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=72.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.++.. +.-.. . |.-+ =|+..++.. +.. ++..+.+++-||+|.-.
T Consensus 3 ivlvGd~~VGKTsli~r~~~--~~f~~----~----y~~T------ig~d~~~k~--~~v---~~~~~~l~iwDtaGqe~ 61 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCK--DVFDK----N----YKAT------IGVDFEMER--FEI---LGVPFSLQLWDTAGQER 61 (170)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC----C----CCCC------CCEEEEEEE--EEE---CCEEEEEEEEECCCCCC
T ss_conf 99999899898999999963--98899----7----2563------450589999--999---99999999998999974
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEECCCCCC
Q ss_conf 289999999860456999955888883479999-99987----399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQADK----YSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~~----~~lp~ilvINKiDr~ 145 (701)
|..=...-+|-+|++|+|.|...--.-+.-.-| +.+.+ ...|++|+-||+|..
T Consensus 62 f~~l~~~y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~ 119 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred CCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 6644377732787589999789878999999999999985089998299999841379
No 210
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.59 E-value=7.8e-07 Score=62.60 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=79.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-HCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 2799986878897789999999-808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY-YAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~-~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-=|+|+|..+.|||||..+|+. +++. .+.++.+ -||+-++ +...++||+||
T Consensus 40 ~vVavvGPpgvGKtTLiksLvk~ytk~--~l~~i~G--------------PiTvvs~-----------K~rRiTfiEc~- 91 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQ--NISDIKG--------------PITVVTG-----------KKRRLTFIECP- 91 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCCCC--------------CEEEEEC-----------CCEEEEEEECC-
T ss_conf 699998989977889999999998544--3755788--------------8799946-----------84268999748-
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCC
Q ss_conf 7552899999998604569999558888834799999998739978999-8176765
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKM 145 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~ 145 (701)
-| ..-+.-...++|-++++|||..|.+.-|-.-+..+..+|+|.++- ++-+|..
T Consensus 92 -nD-i~smiD~AKvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~f 146 (225)
T cd01882 92 -ND-INAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred -CH-HHHHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf -60-99998788764336888616655352089999999975999437885443101
No 211
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.59 E-value=6.3e-07 Score=63.22 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=72.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|.-..|||||+.+++. +.-.. . |.-+ =|+...+.. +.. +++...+++.||+|.-.
T Consensus 3 ivl~Gd~~vGKTsli~r~~~--~~f~~----~----~~~T------ig~~~~~k~--~~~---~~~~~~l~iwDtaG~e~ 61 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVE--NKFKE----D----SQHT------IGVEFGSKI--IRV---GGKRVKLQIWDTAGQER 61 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC----C----CCCC------CCEEEEEEE--EEE---CCEEEEEEEEECCCCHH
T ss_conf 99999499679999999972--98999----8----7997------645789999--999---99999999998999701
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
|..-...-++-+|++|+|.|...--.-+.-.-| +.+ ...++|++++-||+|.
T Consensus 62 ~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl 117 (161)
T cd04113 62 FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 22678998405777899536898899999999999999867999649860343440
No 212
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.59 E-value=5.9e-07 Score=63.38 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=73.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.+++... -.. + |..+. |....+ -.+.. ++..+.+++.||+|.-.
T Consensus 3 ivvvGd~~VGKTsli~r~~~~~--f~~--~------~~~Ti------g~~~~~--k~i~~---~~~~~~l~iwDtaG~e~ 61 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDE--FSE--S------TKSTI------GVDFKI--KTVYI---ENKIIKLQIWDTNGQER 61 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCCCC------CEEEEE--EEEEE---CCEEEEEEEEECCCCHH
T ss_conf 9999999978999999995196--899--8------68865------403579--99999---99999999998999710
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCCC
Q ss_conf 289999999860456999955888883479999-9998---7399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr~ 145 (701)
|..-...-++-+|++|+|.|...--.-+.-.-| .++. ....|++|+-||+|..
T Consensus 62 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~ 118 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf 457899986378679998038987899999999999998789866245100134476
No 213
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.57 E-value=5.3e-07 Score=63.70 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=73.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE--EEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 799986878897789999999808732142201795613780889870853764--079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS--ASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s--s~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-|+++|.-..|||||+.+++. |.- .+.. .-|+.. ..-++.. +++...+++.||+|
T Consensus 5 Kiv~lGd~~vGKTsli~r~~~--~~f------------~~~~------~~Ti~~~~~~k~i~~---~~~~~~l~iwDtaG 61 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKS--GTF------------SERQ------GNTIGVDFTMKTLEI---EGKRVKLQIWDTAG 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCC------------CCCC------CCCCCEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 999999999589999999964--999------------9987------997543789999999---99999999998999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHH---HHCCCCEEEEECCCCC
Q ss_conf 75528999999986045699995588888347-9999999---8739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~---~~~~lp~ilvINKiDr 144 (701)
.-+|..=...-++-+|++|+|.|...--.-+. +..++++ ...++|++|+=||+|.
T Consensus 62 ~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL 120 (165)
T cd01864 62 QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred CCCCCCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
T ss_conf 83445350755221566699713899899999999999999876999843888772376
No 214
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.56 E-value=8.2e-07 Score=62.48 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=73.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE--EEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764--0799996077787138999817987
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS--ASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s--s~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
|+++|....|||+|+-+++. +.-.. .| .-||-. ..-++.. ++....+++.||+|.
T Consensus 3 IvllGd~~VGKTsli~r~~~--~~f~~--------~~----------~~Tig~~~~~k~v~~---~~~~i~l~iwDtaGq 59 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTD--NEFHS--------SH----------ISTIGVDFKMKTIEV---DGIKVRIQIWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--------CC----------CCCCEEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 99999499858999999942--99899--------87----------887208988999999---999999999979996
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 55289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
-.|..-+..-+|-+|++|+|.|...--.-+.-.-| +++ ..+++|++|+-||.|.
T Consensus 60 e~~~~~~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl 117 (161)
T cd04117 60 ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred CCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 0236355888764168899614898899999999999999878998649998732787
No 215
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.56 E-value=4.8e-07 Score=63.95 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=77.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEE-EECCCCCCCEEEEEEECC
Q ss_conf 5279998687889778999999980873214220179561378088987085376407999-960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV-FWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl-~~~~~~~~~~~iNlIDTP 88 (701)
..-|+++|...+|||||+-+|.... ..+ .. ..|+-....+. .+.. .+...+.++||+
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~--~~~---~~---------------~~t~~~~~~~~~~~~~--~~~~~~~~~Dt~ 62 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDE--FPE---GY---------------PPTIGNLDPAKTIEPY--RRNIKLQLWDTA 62 (219)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--CCC---CC---------------CCCEEECCCCCEEECC--CCCEEEEEEECC
T ss_conf 2799999999998899999996476--765---56---------------7614540432036226--660026767679
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECC--CCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCC
Q ss_conf 87552899999998604569999558--88883479999999873---99789998176765875
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSN--AGVEPQTETVWRQADKY---SVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~--eGv~~qT~~vlr~~~~~---~lp~ilvINKiDr~~~d 148 (701)
|..+|..=...-.+-++|+++|+|.. ++..--++..+..+... +.|++++-||+|.....
T Consensus 63 gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 63 GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 86999998875043897899999762056578899999999987466886799969761055430
No 216
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.56 E-value=8e-07 Score=62.55 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=74.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640-79999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
+=|+++|....|||+|+-+++. +.-.. .|. -|+... ...+.. +++...++|.||+|
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~--~~F~~--------~y~----------pTi~~~~~~~i~~---~~~~v~l~iwDtaG 58 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK--DQFPE--------VYV----------PTVFENYVADIEV---DGKQVELALWDTAG 58 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCC----------CCEEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 0999999899669999999970--98999--------847----------8436899999999---99999999997776
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479-999-9998--739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVW-RQAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vl-r~~~--~~~lp~ilvINKiDr 144 (701)
+-+|..-.....+-+|++|+|-|...--.-+.- ..| +.+. ..++|+||+-||+|.
T Consensus 59 ~e~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL 117 (175)
T cd01870 59 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred CCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 61323240443148878999986598799999999999999972989989999872433
No 217
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.55 E-value=2e-06 Score=60.04 Aligned_cols=113 Identities=24% Similarity=0.294 Sum_probs=72.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE--EEEECCCCCCCEEEEEEEC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079--9996077787138999817
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST--TVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~--sl~~~~~~~~~~~iNlIDT 87 (701)
+=.|+++|.-..|||+|+.+++. +.-. +.. .-||..... .+.. +++...+++.||
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~--~~F~------------~~~------~~Tig~d~~~k~i~v---~~~~v~l~iwDt 58 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFP------------ERT------EATIGVDFRERTVEI---DGERIKVQLWDT 58 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC--CCCC------------CCC------CCCEEEEEEEEEEEE---CCEEEEEEEEEC
T ss_conf 69999999799779999999953--9889------------987------886307878999999---999999999977
Q ss_pred CCCCCCH-HHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEECCCCCC
Q ss_conf 9875528-9999999860456999955888883479999-9998----7399789998176765
Q gi|254780264|r 88 PGHVDFT-MEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD----KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 88 PGH~DF~-~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~----~~~lp~ilvINKiDr~ 145 (701)
+|.-.|. .-...-.+-+||+|+|.|...--.-..-.-| +.+. ...+|++|+-||.|..
T Consensus 59 aG~e~~~~s~~~~~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~ 122 (170)
T cd04115 59 AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 8853056777899845773579995047476799999999999986588899799999982134
No 218
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.55 E-value=9.3e-07 Score=62.11 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=74.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-.|+++|....|||+|+-+++.. .-.. .|.-+..+ +. +. .+.+ +++.+.+++.||.|+
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~--~f~~--------~~~pTi~~------~~-~~--~i~i---~~~~~~l~iwDtaGq 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISH--SFPD--------YHDPTIED------AY-KQ--QARI---DNEPALLDILDTAGQ 60 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC--CCCC--------CCCCCCCC------CE-EE--EEEE---CCEEEEEEEEECCCC
T ss_conf 69999999997799999999709--8998--------75884222------03-69--9999---999999999978885
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH----H-HHCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347999999----9-8739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ----A-DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~----~-~~~~lp~ilvINKiDr 144 (701)
-.|..=...-.|-+||+|+|.|...--.-+.-.-|.. . ...++|++|+-||+|.
T Consensus 61 e~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL 119 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred CCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
T ss_conf 13574515564278656887316888899999999999999728899868998504566
No 219
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.55 E-value=8.1e-07 Score=62.52 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=73.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||+|+.+++... -.. + |.. .-|+......+. + +.++....+++-||+|.-.
T Consensus 3 ivvlGd~~VGKTsLi~r~~~~~--f~~--~------y~~------Tig~~~~~k~i~--~-~~~~~~v~l~iwDtaG~e~ 63 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI--FTK--D------YKK------TIGVDFLEKQIF--L-RQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCC------CCCCEEEEEEEE--E-CCCCEEEEEEEEECCCCCC
T ss_conf 9999999988999999998496--898--7------688------556257887899--8-6799799999997899701
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf 2899999998604569999558888834799999998---7399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQAD---KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~---~~~lp~ilvINKiDr~ 145 (701)
|..-...-++-+|++|+|.|...--.-+.-.-|.... ...+|++|+-||+|..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~ 119 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred CCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 34152456123031268840698899999999999999766996299984054441
No 220
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.55 E-value=3.5e-06 Score=58.39 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|....|||+|+-+++.. .... + | --|+... .+.... .+++...+++.||+|+.+
T Consensus 4 ivlvGd~~VGKTsli~r~~~~--~f~~--~------~----------~~Ti~~~-~~~~i~-~~~~~v~l~iwDtaGqe~ 61 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTN--AFPG--E------Y----------IPTVFDN-YSANVM-VDGKPVNLGLWDTAGQED 61 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCCC--C------C----------CCEEEEE-EEEEEE-ECCEEEEEEEECCCCCCC
T ss_conf 999899998699999999739--9999--8------6----------8837887-679999-999999999986999724
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHH-HHH--HCCCCEEEEECCCCCC
Q ss_conf 28999999986045699995588888347-99999-998--7399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWR-QAD--KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr-~~~--~~~lp~ilvINKiDr~ 145 (701)
|..=.....+-+|++|+|-|...--.-+. +.-|. ++. ..++|+|||=||+|..
T Consensus 62 ~~~~~~~~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~ 118 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred CHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 067889987406689999867987889999999999999858899979874730131
No 221
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.55 E-value=3.4e-06 Score=58.48 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=73.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407-99996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|.++|....|||+|+-+++... -.. + |. -||...- ..+. .+++.+.+++.||+|+
T Consensus 3 Kvv~lGd~~VGKTsli~r~~~~~--f~~----~----y~----------pti~~~~~~~~~---~~~~~v~l~iwDTaG~ 59 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNK--FPS----E----YV----------PTVFDNYAVTVM---IGGEPYTLGLFDTAGQ 59 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--CCC----C----CC----------CCEEEEEEEEEE---ECCEEEEEEEEECCCC
T ss_conf 99998999958899999996498--999----8----67----------863478999999---9999999999989997
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHH-HHH--HHCCCCEEEEECCCCC
Q ss_conf 55289999999860456999955888883479-999-999--8739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVW-RQA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vl-r~~--~~~~lp~ilvINKiDr 144 (701)
-+|..=.....+-+|++|+|-|...--.-..- ..| +.+ ...++|++|+=||+|.
T Consensus 60 e~~~~l~~~~~~~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL 117 (175)
T cd01874 60 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred CCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 4512465887713888899963798788999999999999982989988999987203
No 222
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.54 E-value=2e-06 Score=60.05 Aligned_cols=117 Identities=15% Similarity=0.014 Sum_probs=76.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
++-++.|+|....|||+|+-+++...=... .|.-+ .|....+. ++... ++...+.|-||+
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~---------~y~~T------i~~~~~~k--~v~v~---g~~~~L~i~Dt~ 62 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLN---------AYSPT------IKPRYAVN--TVEVY---GQEKYLILREVG 62 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCC---------CCCCC------CCCEEEEE--EEEEC---CEEEEEEEEECC
T ss_conf 089999999999889999999964999866---------65675------46618999--99989---999999998556
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHH-HHCCCCEEEEECCCCCC
Q ss_conf 875528999999986045699995588888347-9999999-87399789998176765
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQA-DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~-~~~~lp~ilvINKiDr~ 145 (701)
|+-.|..-...-++-+|++|||-|...--.-+- ..++++. ....+|++||=||.|..
T Consensus 63 g~e~~~~l~~~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~ 121 (169)
T cd01892 63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 53235566588754698899999799878999999999970056898189998865542
No 223
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.53 E-value=1.4e-06 Score=61.00 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=74.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|....|||+|+-+++... +.|. ...-||.....+-... .+++...+++.||+|.-.
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~--------------f~~~-----~y~~tig~~~~~k~i~-v~~~~v~l~iwDtaG~e~ 62 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR--------------FLVG-----PYQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSER 62 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--------------CCCC-----CCCCCCEEEEEEEEEE-ECCEEEEEEEEECCCCHH
T ss_conf 9999969987999999998597--------------9989-----9787630588999999-999999999991999731
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr 144 (701)
|..-.....+-+|++|+|.|...--.-..-.-|. .+ ....+|++||-||+|.
T Consensus 63 ~~~l~~~y~~~a~~~ilvydit~~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL 117 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 2355798834774457883069879999899999999974899997999774663
No 224
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.53 E-value=1.4e-06 Score=60.96 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=76.8
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
+.+=-|.++|....|||||+.+++. +.-.. + |.-+ -|+..... .+.+ +++...++|-||
T Consensus 4 d~~~KIvlvGd~~VGKTSli~r~~~--~~F~~--~------~~~T------ig~d~~~k--~v~i---~~~~v~l~iwDt 62 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFAD--NTFSG--S------YITT------IGVDFKIR--TVEI---NGERVKLQIWDT 62 (199)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCCC------CCEEEEEE--EEEE---CCEEEEEEEEEC
T ss_conf 7577999999799888999999950--99999--8------6897------55587899--9999---999999999989
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf 987552899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr 144 (701)
+|.-.|..=.....+-+|++|+|.|...--.-.--.-|. .+ ....+|+||+-||+|.
T Consensus 63 aGqe~~~~l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl 122 (199)
T cd04110 63 AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 998123535266642465423897179889999999999999975998757999885544
No 225
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.52 E-value=3e-06 Score=58.82 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=73.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|.++|.-..|||||+-+++. +.-.. .|..+..+ .-..++.. +++.+.+++.||+|+-
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~--~~f~~--------~y~pTi~~---------~~~~~i~v---~~~~~~l~i~DTaG~e 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAN--DAFPE--------EYVPTVFD---------HYAVSVTV---GGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCEEEE---------EEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 899999899859999999962--98998--------86885752---------02279999---9999999999797640
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-999999-98--739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-AD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~~--~~~lp~ilvINKiDr 144 (701)
+|..-.....+-+|++|+|.|...--.-+. +..|.. +. ..++|++|+=||+|.
T Consensus 60 ~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL 116 (174)
T cd04135 60 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDL 116 (174)
T ss_pred CCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 315565998557876789843797788999999999999986849988999685230
No 226
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.52 E-value=1.8e-06 Score=60.23 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407-99996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|+++|....|||+|+-+++.. .-.. .|.- ||...- -.+.. +++.+.+++.||.|.
T Consensus 3 KivllGd~~VGKTsli~r~~~~--~F~~--------~y~~----------Ti~~~~~~~i~~---~~~~~~l~iwDtaG~ 59 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG--TFRE--------SYIP----------TIEDTYRQVISC---SKNICTLQITDTTGS 59 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHC--CCCC--------CCCC----------CCCCEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 9999899997699999999649--6999--------8688----------454205589999---999999999989998
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH------CCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-999999987------39978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQADK------YSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~~------~~lp~ilvINKiDr 144 (701)
-+|..-.....+-+|++|+|.|...--.-+. +..|+...+ .++|++||-||+|.
T Consensus 60 e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl 120 (165)
T cd04140 60 HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE 120 (165)
T ss_pred CCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 4654232445068857999813898789999999999999996158888878998642464
No 227
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.52 E-value=8.8e-07 Score=62.28 Aligned_cols=114 Identities=21% Similarity=0.292 Sum_probs=63.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 527999868788977899999998087321422017-9561378088987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+-.|+++|--.+|||||.-+|. |.-- .+++ .=+ |+.++.-.+.+++ ...+-+.||+
T Consensus 189 ~p~ValVGYTNAGKSTL~n~Lt---~~~~---~~~d~lFa-------------TLd~t~r~~~l~~----~~~~ll~DTV 245 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALT---GADV---YAADQLFA-------------TLDPTTRRLDLPD----GGEVLLTDTV 245 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---HCCC---CCCCCCEE-------------ECCCCCCEEECCC----CCEEEEEECC
T ss_conf 9769996678877899999985---1776---41034313-------------5367320488799----9769998150
Q ss_pred CCCCCHH-HH-------HHHHHHHCEEEEEEECCC-CCCHHH---HHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 8755289-99-------999986045699995588-888347---9999999873997899981767658
Q gi|254780264|r 89 GHVDFTM-EV-------ERSIRVTDGAIALLDSNA-GVEPQT---ETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~-Ev-------~~aL~~~DgailvVDa~e-Gv~~qT---~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
|.+.... +. ..-..-+|-.+.|||+.. ....|- ..++.+.-....|+|+|+||||++.
T Consensus 246 GFI~~LP~~Li~aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~ 315 (351)
T TIGR03156 246 GFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCC
T ss_conf 0563088679999999999998598999980588847899999999999976999998899996701589
No 228
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.52 E-value=1.4e-06 Score=61.07 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=71.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||+|+-+++. |.-.. . |..+ -|..+.+..+. + +++.+.+++.||||.-.
T Consensus 3 ivvlG~~gVGKTsli~rf~~--~~F~~--~------y~pT------ig~~~~~k~v~--~---dg~~~~l~IwDtag~~~ 61 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLA--QEFPE--E------YIPT------EHRRLYRPAVV--L---SGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CCCC------CCEEEEEEEEE--E---CCEEEEEEEEECCCCCC
T ss_conf 99999799899999999971--98888--7------4784------66167899999--9---99999999995877304
Q ss_pred CH--------HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHH------HCCCCEEEEECCCCC
Q ss_conf 28--------99999998604569999558888834799999-998------739978999817676
Q gi|254780264|r 93 FT--------MEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QAD------KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~--------~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~~------~~~lp~ilvINKiDr 144 (701)
|. +-..+++|-+||+|||-|...--.-+.-..|+ +.. ...+|+|||=||.|.
T Consensus 62 ~~~tagqe~~~~r~~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL 128 (198)
T cd04142 62 YPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 5556521235556440146888999998867788899999999999985147999828998345431
No 229
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.50 E-value=2.4e-06 Score=59.47 Aligned_cols=111 Identities=27% Similarity=0.325 Sum_probs=70.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||||+.+++.. .-. ++ |..+..+ + .+.. +.. +++...+++.||+|.-.
T Consensus 2 iv~vGd~~VGKTsli~rf~~~--~f~--~~------y~~T~~~------~-~~~~--~~v---~~~~~~l~iwDtaG~e~ 59 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTK--RFI--GE------YDPNLES------L-YSRQ--VTI---DGEQVSLEILDTAGQQQ 59 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCC--CC------CCCCCCC------E-EEEE--EEE---CCEEEEEEEEECCCCCC
T ss_conf 999998997789999999749--899--87------5995563------0-5799--999---99999999992898501
Q ss_pred CHHHH-HHHHHHHCEEEEEEECCCCCCHHHHHHHHH-HH-----HCCCCEEEEECCCCCC
Q ss_conf 28999-999986045699995588888347999999-98-----7399789998176765
Q gi|254780264|r 93 FTMEV-ERSIRVTDGAIALLDSNAGVEPQTETVWRQ-AD-----KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev-~~aL~~~DgailvVDa~eGv~~qT~~vlr~-~~-----~~~lp~ilvINKiDr~ 145 (701)
|..-. .+-++-+||+|+|-|...--.-+.-.-|.+ +. ..++|++|+=||+|..
T Consensus 60 ~~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~ 119 (165)
T cd04146 60 ADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred CCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 220125543045878999986588899999999999999984669995399844554521
No 230
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.50 E-value=4e-06 Score=58.02 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=72.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|.++|.-..|||||+-++.. +.-.. + |. =|+... ...+. .+++.+.+++.||+|.-
T Consensus 4 ivllGd~~VGKTsL~~rf~~--~~F~~----~----~~----------pTi~~~~~~~i~---v~~~~~~l~iwDTaG~e 60 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTS--NKFPT----D----YI----------PTVFDNFSANVS---VDGNTVNLGLWDTAGQE 60 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CCEEEEEEEEEE---ECCEEEEEEEEECCCCC
T ss_conf 99989999779999999965--98999----8----67----------853589999999---99989999999799976
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHH-HHH--HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999-998--739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWR-QAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr-~~~--~~~lp~ilvINKiDr 144 (701)
+|..-.....+-+|++|+|.|...--.-.- ..-|. .+. ..++|+||+-||+|.
T Consensus 61 ~~~~l~~~~y~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL 117 (176)
T cd04133 61 DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 542468987267875799997898789999999999999986849988999986320
No 231
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.50 E-value=1.4e-06 Score=61.01 Aligned_cols=114 Identities=24% Similarity=0.251 Sum_probs=75.3
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEE
Q ss_conf 02527999868788977899999998087321422017956137808898708537640--7999960777871389998
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlI 85 (701)
+-+==|+++|....|||||+.+++. +.-.. . | .-|+... .-.+.+ +++...+++-
T Consensus 5 d~~~KivllGd~~VGKTsli~r~~~--~~f~~----~----~----------~~Tig~d~~~k~i~~---~~~~v~l~iw 61 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP----G----Q----------GATIGVDFMIKTVEI---KGEKIKLQIW 61 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH--CCCCC----C----C----------CCCCCEEEEEEEEEE---CCEEEEEEEE
T ss_conf 7798999999899799999999985--98999----8----6----------774124789999999---9999999999
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 1798755289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
||+|.-.|..-...-++-+|++|+|.|...--.-+.-.-| +.+ ...++|+||+=||+|.
T Consensus 62 DtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL 124 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124 (169)
T ss_pred ECCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 899984445155777423664599814898889999999999999868988638973113434
No 232
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.47 E-value=1.3e-05 Score=54.77 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=105.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
=|+-|.|.-++||+||+.+|.. |.......|-. ++++.-+. |.. .+.+-++|-||||.
T Consensus 40 vnvLi~G~TG~GKSSliNALF~--~~~~~v~~vg~-----~t~~~~~~-------------~~~--~~~~~l~lwDtPG~ 97 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQ--GEVKEVSKVGV-----GTDITTRL-------------RLS--YDGENLVLWDTPGL 97 (296)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--CCCCEEEECCC-----CCCCHHHH-------------HHH--CCCCCEEEECCCCC
T ss_conf 1589743777768899999970--26734210466-----88701567-------------741--26652488437885
Q ss_pred CC-------CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 55-------28999999986045699995588888347999999987399--7899981767658755556664111102
Q gi|254780264|r 91 VD-------FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSV--PRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 91 ~D-------F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~l--p~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
-| ...-+.--|.=.|-.++++|+-.--...-+..||+.....+ |.+++||.-||.--
T Consensus 98 gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p-------------- 163 (296)
T COG3596 98 GDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP-------------- 163 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCC--------------
T ss_conf 532022189999999886322479996147770014779999999986057606999736654365--------------
Q ss_pred CCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 68330002345556653024422344311452226985138740043178899999988630023457899986327789
Q gi|254780264|r 162 ANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESF 241 (701)
Q Consensus 162 ~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~ 241 (701)
+..|+.......- +.++++=+.. +.+
T Consensus 164 -----------------------------------~~~W~~~~~~p~~-----a~~qfi~~k~----~~~---------- 189 (296)
T COG3596 164 -----------------------------------GREWDSAGHQPSP-----AIKQFIEEKA----EAL---------- 189 (296)
T ss_pred -----------------------------------CCCCCCCCCCCCH-----HHHHHHHHHH----HHH----------
T ss_conf -----------------------------------5430002599987-----8999999999----999----------
Q ss_pred CHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 988987300000310100323431000122102488989871786
Q gi|254780264|r 242 SSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
...+ ....||++++.....|...|+.+++..+|.
T Consensus 190 -----~~~~------q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 190 -----GRLF------QEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred -----HHHH------HHCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf -----9987------631774775254676689999999986731
No 233
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.47 E-value=3.3e-06 Score=58.60 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
.+=.+|-|+|==.+||||+..+|.. +.. . .+. -|+-.+.-++.++ ++.+++.|-
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~--~~~------~------~~~-------PT~g~~~e~~~~~-----~~~~~~wDl 68 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN--DRL------A------QHQ-------PTQHPTSEELAIG-----NIKFTTFDL 68 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC--CCC------C------CCC-------CCCCCCEEEEEEC-----CEEEEEEEC
T ss_conf 6614799996588988999999806--997------5------305-------7878864899999-----999999988
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHH----HHHHCCCCEEEEECCCCCCCC
Q ss_conf 987552899999998604569999558888-834799999----998739978999817676587
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWR----QADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr----~~~~~~lp~ilvINKiDr~~~ 147 (701)
.|+..|..-=..=..-+||.|.|||+..-- ..+.+..+. ...-.++|.+++.||.|.+.+
T Consensus 69 gG~~~~R~lW~~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a 133 (184)
T smart00178 69 GGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 98777889999882167589999726868899999999999864676559709999975677789
No 234
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.47 E-value=1.3e-06 Score=61.12 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=74.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|.++|....|||+|+-+++. |.-.. ... -||-....+-.++-.++....+++.||+|.-
T Consensus 4 KivllGd~~VGKTsL~~rf~~--~~F~~------------~~~------~Tig~df~~k~i~i~dg~~v~l~IwDTaGqe 63 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTE--GRFAE------------VSD------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC------------CCC------CCCCEEEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 999999999619999999981--99999------------868------7201688998999779959999999798863
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-9998----739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~----~~~lp~ilvINKiDr 144 (701)
.|..-...-.|-+||+|+|.|...--.-+.-.-| +.+. ...+|++||=||.|.
T Consensus 64 ~~~si~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL 121 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred CCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCH
T ss_conf 4564428774212446897147777999999999999999749888538988742312
No 235
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.47 E-value=8.7e-07 Score=62.31 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=73.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|.++|.-..|||||+-+++. +. +.+..+. --|++..+. .+.+ +++...+++.||+|+-
T Consensus 4 KivlvGd~~VGKTsli~r~~~--~~------------f~~~~~~--Tig~~~~~k--~i~~---~~~~~~l~iwDtaG~e 62 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTE--KK------------FMADCPH--TIGVEFGTR--IIEV---NGQKIKLQIWDTAGQE 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CC------------CCCCCCC--CCCEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf 999999999579999999912--98------------8999999--744688999--9999---9999999999899985
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
.|..-...-++-+|++|+|.|...--.-+- +.-++.+. ..+.|++||-||.|.
T Consensus 63 ~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL 119 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred CCCCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 444252111431546599725874767999999999999856999758703401574
No 236
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.47 E-value=5.2e-06 Score=57.34 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=80.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC--CCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 799986878897789999999808732--142201795613780889870853764079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSH--KIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~--~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
+++|+|....||+||..+|+..-.+|= .+|..+ |. |. ..+.. +++.++|+||-|
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR------Dv----------ie---e~i~i-----~G~pv~l~DTAG 274 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR------DV----------IE---EDINL-----NGIPVRLVDTAG 274 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCC------CE----------EE---EEEEE-----CCEEEEEEECCC
T ss_conf 49998799886799999886678667428999741------03----------78---99998-----988999985677
Q ss_pred CCCCHHHH--------HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
Q ss_conf 75528999--------9999860456999955888883479999999873997899981767658755
Q gi|254780264|r 90 HVDFTMEV--------ERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADF 149 (701)
Q Consensus 90 H~DF~~Ev--------~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~ 149 (701)
--+=.+.| ..++.-+|..++|+|+.+....+-..++. +...+.|.++++||.|......
T Consensus 275 iRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCC
T ss_conf 666734899999999999998599899997088777601177887-2436897799996021156432
No 237
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.46 E-value=2.1e-06 Score=59.87 Aligned_cols=112 Identities=22% Similarity=0.202 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|+++|....|||+|+-+++. +.-.. .|.-+. |+..... .+.. +++...+++.||+|.-
T Consensus 3 KivllGd~~VGKTsli~r~~~--~~f~~--------~y~~Ti------g~~~~~k--~i~~---~~~~i~l~iwDtaGqe 61 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYAD--DSFTS--------AFVSTV------GIDFKVK--TVFR---NDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCC------CEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf 999999999688999999924--98899--------768876------3787999--9999---9999999999699983
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-999999987---39978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQADK---YSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~~---~~lp~ilvINKiDr 144 (701)
.|..=...-++-+|++|+|.|...--.-+. +.-++++.+ .+.|++|+-||.|.
T Consensus 62 ~~~~l~~~y~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL 118 (165)
T cd01865 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred CCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 455441544113544899851788799999999999999868987259996024235
No 238
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.45 E-value=3.5e-06 Score=58.38 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=73.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|.++|....|||||+-+++... -.. + |.. |+... ...+.. +++.+.+++.||+|+-
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~--F~~--~------y~p----------T~~~~~~~~i~~---~~~~v~l~iwDtaG~e 59 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNG--YPT--E------YVP----------TAFDNFSVVVLV---DGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCC----------CEEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 9999989978899999996199--999--8------578----------358999999999---9999999999899873
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH-H--HHCCCCEEEEECCCCCC
Q ss_conf 5289999999860456999955888883479-99999-9--87399789998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ-A--DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~-~--~~~~lp~ilvINKiDr~ 145 (701)
+|..=.....+-+|++|+|.|...--.-+-- ..|.+ . ...+.|++|+=||.|..
T Consensus 60 ~~~~l~~~~~~~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~ 117 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 4434567661378789999965987889999999999999609899889998870110
No 239
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.43 E-value=4.5e-06 Score=57.74 Aligned_cols=112 Identities=17% Similarity=0.252 Sum_probs=72.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|....|||+|+-+++. +.-... |.- .-|+..... ++.. +++...++|.||+|.-.
T Consensus 3 ivlvGd~~VGKTsLi~rf~~--~~F~~~--------y~~------Tig~d~~~k--~i~v---~~~~v~l~iwDtaGqe~ 61 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVE--GEFDED--------YIQ------TLGVNFMEK--TISI---RGTEITFSIWDLGGQRE 61 (182)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCCC--------CCC------CCEEEEEEE--EEEE---CCEEEEEEEEECCCCHH
T ss_conf 99999999898999999953--999999--------888------733898999--9999---99999999986776487
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHHH--CCCCEEEEECCCCCC
Q ss_conf 289999999860456999955888883479999-99987--399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQADK--YSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~~--~~lp~ilvINKiDr~ 145 (701)
|..=+..-++-+|++|+|.|...--.-..-.-| +++.+ ...++|||-||.|..
T Consensus 62 f~~~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~ 117 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 89999998647878999997899899998999999999768999889999866355
No 240
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.43 E-value=8.2e-06 Score=56.04 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=74.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE-EEEEECCCCCCCEEEEEEECCC
Q ss_conf 279998687889778999999980873214220179561378088987085376407-9999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS-TTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~-~sl~~~~~~~~~~~iNlIDTPG 89 (701)
|=|.++|....|||||+-++.. |.-.. + |. -|+...- .... .+++.+.++|.||.|
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~--~~F~~--~------y~----------~Ti~~~~~~~~~---v~~~~v~l~iwDTaG 57 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ--V------YE----------PTVFENYVHDIF---VDGLHIELSLWDTAG 57 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--C------CC----------CCEEEEEEEEEE---ECCEEEEEEEEECCC
T ss_conf 9899999799769999999970--99999--8------68----------837899999999---999999999984778
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEECCCCCC
Q ss_conf 75528999999986045699995588888347-999999-98--7399789998176765
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-AD--KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~~--~~~lp~ilvINKiDr~ 145 (701)
+-+|..=.....+-+|++|+|.|...--.-+. +.-|.. +. ..++|+||+-||+|..
T Consensus 58 qe~~~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~ 117 (189)
T cd04134 58 QEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCC
T ss_conf 500003556764378645999978987899999999999999749799789999880046
No 241
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.42 E-value=2.5e-06 Score=59.32 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=74.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|-|+|=-.+|||||+-+|- .+... ++ .=|+....-++.++ ++.+++-|..|+-.
T Consensus 2 ililGLd~aGKTTil~~l~--~~~~~------------~~-------~PT~G~~~~~~~~~-----~~~l~~~DlgG~~~ 55 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ--GEIPK------------KV-------APTVGFTPTKLRLD-----KYEVCIFDLGGGAN 55 (167)
T ss_pred EEEEEECCCCHHHHHHHHC--CCCCC------------CC-------CCCCCCCEEEEEEC-----CEEEEEEECCCCHH
T ss_conf 8999008998899999982--89987------------65-------08777317999989-----99999998998778
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHH----HHCCCCEEEEECCCCCCCC
Q ss_conf 2899999998604569999558888-83479999999----8739978999817676587
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQA----DKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~----~~~~lp~ilvINKiDr~~~ 147 (701)
|..-=..=..-+||.|.|||+..-- ....+..++.+ ...++|++++.||.|.+.+
T Consensus 56 ~R~lW~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a 115 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC
T ss_conf 889999873477657999855758899999999999965887789959999886576158
No 242
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.39 E-value=1e-05 Score=55.50 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC--CCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 79998687889778999999980873--2142201795613780889870853764079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKS--HKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i--~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
.|+|+|..-+||+||.-+|+-..-+| ..+|..+ |. | -..+.+. ++.++|+||-|
T Consensus 218 ~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTR------D~----------i---e~~l~l~-----G~~v~l~DTAG 273 (445)
T PRK05291 218 KVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTR------DV----------I---EEHINLD-----GIPLRLIDTAG 273 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCC------CE----------E---EEEEEEC-----CEEEEEEECCC
T ss_conf 69988999876899999985787467318999740------40----------2---2368999-----98999998997
Q ss_pred CCCCHHHH-----H---HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 75528999-----9---999860456999955888883479999999873997899981767658
Q gi|254780264|r 90 HVDFTMEV-----E---RSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev-----~---~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
--+=.+++ . ..+.-+|-.++|+|+..+....-..++... .+-|.++|+||+|...
T Consensus 274 iR~t~d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~ 336 (445)
T PRK05291 274 IRETEDEVEKIGIERSRKAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTG 336 (445)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCC
T ss_conf 66557458899999999999839999999879988872259999851--7998799985120466
No 243
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=98.39 E-value=1.6e-05 Score=54.19 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=70.7
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-|=.|++||-..+|||||.-+| +++-.+.+. |- --|+.-..=.+.+.+ ...|.+.|.|
T Consensus 157 liADVgLVG~PNaGKSTLl~~i---s~A~pkIa~------Yp---------FTTl~P~lGvv~~~d----~~~~~iaDiP 214 (334)
T PRK12299 157 LLADVGLVGLPNAGKSTLISSV---SAAKPKIAD------YP---------FTTLHPNLGVVRVDD----YKSFVIADIP 214 (334)
T ss_pred EECCCEEEECCCCCHHHHHHHH---HCCCCCCCC------CC---------CEECCCEEEEEEECC----CCEEEEEECC
T ss_conf 4403014636987466999987---647643357------87---------300387547999468----8678998667
Q ss_pred CCCC-------CHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEECCCCCCC
Q ss_conf 8755-------289999999860456999955888-88347999999987-----3997899981767658
Q gi|254780264|r 89 GHVD-------FTMEVERSIRVTDGAIALLDSNAG-VEPQTETVWRQADK-----YSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~D-------F~~Ev~~aL~~~DgailvVDa~eG-v~~qT~~vlr~~~~-----~~lp~ilvINKiDr~~ 146 (701)
|-+. ...+..+-+.=|..-+.|||+... +..+-+.+.+.+.. .+-|.++++||||.+.
T Consensus 215 GlIegA~~g~GLG~~FLrHieR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~ 285 (334)
T PRK12299 215 GLIEGASEGAGLGHRFLKHIERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (334)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 43355234777478998766534369999979988989999999999998506553698799998810688
No 244
>KOG0467 consensus
Probab=98.38 E-value=3.1e-10 Score=84.49 Aligned_cols=422 Identities=9% Similarity=-0.061 Sum_probs=207.2
Q ss_pred CCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCC-CC
Q ss_conf 86567102527999868788977899999998087321--4220179561378088987085376407999960777-87
Q gi|254780264|r 2 ARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHK--IGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRD-GG 78 (701)
Q Consensus 2 ~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~--~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~-~~ 78 (701)
..+-+-++|| ++-.|+|++|++++++..+.++.+.. .++.. +.+..-.++++++|+....+...+...- .+
T Consensus 172 ~l~~~~~~i~--d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~----~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~ 245 (887)
T KOG0467 172 ELDDNWENIE--DEEITFGPEDGNVIFASALDGWGFGIEQFAKFY----AKKLGLKDAALLKFLWGDRYIDPKTKRICEG 245 (887)
T ss_pred HCCCHHHHHH--HCCEEECCCCCCEEEEEECCCCCCCHHHHHHHH----HHHCCHHHHHHHHHHCCCEEECCHHHHHHCC
T ss_conf 1021032210--100043677884899871015620199999999----8744734665213210452433204666435
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CHHHHHH
Q ss_conf 138999817987552899999998604569999558888834799999998739978999817676587----5555666
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA----DFYRSVE 154 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~----d~~~~l~ 154 (701)
...-+.+|.|+|++|..+....-+++|++ .+.+..+++.+++..++++-.+ .++.|+|++..- .+.....
T Consensus 246 ~~~~grkplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~-----~ll~~im~~wLPls~avll~a~~ 319 (887)
T KOG0467 246 KKLKGRKPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR-----NLLDAIMSTWLPLSDAVLLTVVY 319 (887)
T ss_pred CCCCCCCCCCCEEEHHHHHHHHHHHHCCC-HHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 67666777631333005789999874320-2888998764302121358999-----99999997526321022999988
Q ss_pred HHCCCCCCC---CCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 411110268---33000234555665302442234431145222698513874004317889999998863002345789
Q gi|254780264|r 155 MISSRLGAN---PLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSA 231 (701)
Q Consensus 155 ~i~~~l~~~---~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~ 231 (701)
.+-+-+... ..-+..+ +...- |.....+..- +..-+.. .+. +++.- +.
T Consensus 320 ~lp~pl~~~~~r~~rl~~s----~~~~~--~~~~~~~v~~-~~~~~pv--iv~-------------------Vskm~-~~ 370 (887)
T KOG0467 320 KLPDPIRSQAERGLRLLSS----SDHRS--DPPLTKAVKS-CSKESPV--LVF-------------------VSKML-AT 370 (887)
T ss_pred HCCCHHHHHHHHHCEECCC----CCCCC--CHHHHHHHHC-CCCCCCE--EEE-------------------EEEEE-CC
T ss_conf 5597799998752501268----41113--7276654113-7998847--999-------------------97220-46
Q ss_pred HHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH-HHEECCCCCCCC---CCCCCCCC
Q ss_conf 99863277899889873000003101003234310001221024889898717862-130001222245---67521011
Q gi|254780264|r 232 MDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP-LDVRAIKGVDVK---SNSEIDVS 307 (701)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP-~~~~~~~~~~~~---~~~~~~~~ 307 (701)
-. ..+.... ..-|.+++-|.-..+.-+- .++. .|.+ ......+...+| +......-
T Consensus 371 ~~-----k~lp~~~----------l~~~ari~sgTlr~g~~v~-v~~p----d~~~~e~i~~~~ie~lyl~mgqelv~~d 430 (887)
T KOG0467 371 PL-----KYLPQSR----------LLAFARIFSGTLRVGQVVY-VLGP----DPLSPEHITECTVESLYLFMGQELVPLD 430 (887)
T ss_pred CH-----HHCCHHH----------HEEEEEECCCCEEECCEEE-ECCC----CCCCCCEEEEEEEHHHHHHHCCCCEEEE
T ss_conf 23-----2172302----------1156350148446211764-2378----9998540456540556775045522310
Q ss_pred CCCCCCCCEEC-----CC--CCC-CCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCE-EHHHHH---------HHCCCEE
Q ss_conf 23456542010-----33--211-654671000011013345683689832655411-104532---------1047445
Q gi|254780264|r 308 AVDSSPLSMLA-----FK--VMA-DSFVGSLTFCRIYSGKISKGDSLLNTVKGKKER-VGRMLQ---------MHSNSRE 369 (701)
Q Consensus 308 ~~~~~pl~~~v-----~K--~~~-d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~k-V~~l~~---------~~g~~~~ 369 (701)
..+.+.+++.. .| ... +.-.|.+++ +.|+||...+..+.+..+..--+ +..+-+ ..+...-
T Consensus 431 ~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~-~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~g 509 (887)
T KOG0467 431 EVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLV-VNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENG 509 (887)
T ss_pred CCCCCCEEEECCCCEEECCCEECCCCCCCCEEE-EEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 247786798616644751541103688765045-6664024789996318867768899887766056406678876254
Q ss_pred EEEECCCCCEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCE--EEEEEEECCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 420035673264138---7444321101277884101566366521--35777615643220257888854102742014
Q gi|254780264|r 370 DIDEAYCGDIIALAG---LKETTTGDTLCDPSRPIVLERMDFPEPV--IQIAIEPKSKGDQERMSLALSRLVAEDPSLRV 444 (701)
Q Consensus 370 ~v~~a~aGdIv~I~G---l~~~~~gdTl~~~~~~~~~~~~~~~~Pv--v~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v 444 (701)
+..-+.||.+=.=.+ +.. ..+--+..++-.+++.-.-...|+ ...+|++ .+..++..+|....+.+|.-+.
T Consensus 510 Ehvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET~~e~s~l~~~~~I~~---~~~~~~~~~~ki~~~~~pl~~~ 585 (887)
T KOG0467 510 EHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFRETIIEDSDLLANLSIGQ---ETKCLPRGQLKIKLRVVPLSGA 585 (887)
T ss_pred CEEEEECCHHHHHHHHHHHHH-HHCEEEEECCCCCCHHHHCCCCCHHHHHHHCCC---CCCCCCCCCEEEEEEECCCCCC
T ss_conf 103443017779989988765-530688724876315654045301002332273---2110301233677664046652
Q ss_pred EEECCCCEEEEEECCHHHHHHHHHHHHHHC-CCCCEECCCCCCCCCCCCCC
Q ss_conf 450457546876066478999999987411-13320105410110144421
Q gi|254780264|r 445 SMDPNSGQTNLSGMGELHLEIIVDRMLREF-KVDANVGAPYVSYRESVTKS 494 (701)
Q Consensus 445 ~~~~etGE~il~g~GElhLev~l~~L~~~f-~iei~vs~P~V~yrEti~~~ 494 (701)
.++ -+||+.....+++|-+- |+-..+ .+...++ +.+.++||+...
T Consensus 586 ~v~-~l~~~~~ti~~i~~~~~---~~~~i~e~~k~~~~-e~ls~~~s~~~~ 631 (887)
T KOG0467 586 VVD-LLDKNSSLISNILRGES---RQVPIDESQKGSFE-ENLSLLISLERL 631 (887)
T ss_pred EEC-CCCCCCHHCCCHHCCCC---CCCCCCCCCCCCCC-CCCCHHHHHHHH
T ss_conf 221-24332110011012544---44301111245300-232379999887
No 245
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.36 E-value=5.8e-06 Score=57.01 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=73.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|...-|||||+.++.... ...... .|. |.++....+.+.-...+.+.+.++|-||.|.-.
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~-f~~~~~-----~Ti----------G~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqer 66 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ-VLGRPS-----WTV----------GCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CCCCCC-----CCE----------EEEEEEEEEEECCCCCCCCEEEEEEEECCCCHH
T ss_conf 9999999989999999998398-888888-----850----------367899999933787678389999998998775
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH----------------------HHCCCCEEEEECCCCCCC
Q ss_conf 2899999998604569999558888834799999-99----------------------873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA----------------------DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~----------------------~~~~lp~ilvINKiDr~~ 146 (701)
|..-...-.+-+||+|||-|...--.-.-..-|. +. ....+|+++|=||.|+..
T Consensus 67 y~sl~~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCC
T ss_conf 77678997588989999998949899986999999997536766654556665553334678975899976065243
No 246
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=7.5e-06 Score=56.30 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=74.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 7999868788977899999998087321422017956137808898708537640-799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-|.++|....|||+|+-++.. +.-.. . |. -|+... ..++.. +++.+.++|-||+|.
T Consensus 3 KivlvGd~~VGKTsLi~r~~~--~~F~~----~----y~----------pTi~~~~~~~~~v---~~~~v~l~iwDTaGq 59 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAK--DCYPE----T----YV----------PTVFENYTASFEI---DEQRIELSLWDTSGS 59 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC----C----CC----------CCEEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 999999999778999999963--99999----8----57----------8568888999999---999999999968987
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-999999-98--739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-AD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~~--~~~lp~ilvINKiDr 144 (701)
-+|..-.....+-+|++|||-|...--.-.. ..-|.. +. ..+.|++|+=||+|.
T Consensus 60 e~~~~l~~~~y~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DL 117 (178)
T cd04131 60 PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred HHHCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 4211036677346878999973798788999999999999986879988999985436
No 247
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.34 E-value=3e-07 Score=65.25 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=72.1
Q ss_pred CCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--
Q ss_conf 565420103321165467100001101334568368983265541110453210474454200356732641--3874--
Q gi|254780264|r 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK-- 386 (701)
Q Consensus 311 ~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~-- 386 (701)
++||.+.|..++..+..|.++.+||.+|+++.||+|.....+...+|.++... ..++++|.||+-|++ .|++
T Consensus 2 dkPlRmpId~vf~i~G~GtVvtG~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aGd~v~l~L~gi~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECCCCCEEEEEEEEEC----CCCCCEECCCCEEEEEECCCCHH
T ss_conf 98758899889972995699999981177857999772786433799999998----84958888998999998799899
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4432110127788
Q gi|254780264|r 387 ETTTGDTLCDPSR 399 (701)
Q Consensus 387 ~~~~gdTl~~~~~ 399 (701)
++..|+.||++++
T Consensus 78 ~i~rG~Vl~~~~n 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HCCCCCEEECCCC
T ss_conf 9267689955689
No 248
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=6.3e-06 Score=56.79 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=84.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-++|+|..+.|||||.-+|+.+ ++-+.-+|..--||+-|+ +...|+|+.|| -
T Consensus 71 IvavvGPpGtGKsTLirSlVrr---------------~tk~ti~~i~GPiTvvsg-----------K~RRiTflEcp--~ 122 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRR---------------FTKQTIDEIRGPITVVSG-----------KTRRITFLECP--S 122 (1077)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---------------HHHHHHHCCCCCEEEEEC-----------CEEEEEEEECH--H
T ss_conf 8996369988746899999999---------------877542036786478615-----------63578988671--7
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 52899999998604569999558888834799999998739978999-8176765875555666411110
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIF-CNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilv-INKiDr~~~d~~~~l~~i~~~l 160 (701)
| ...+.-...++|-++|+||+.-|.+..|-.-+..+..+++|.++- ++.+|-.-. ..++.++..+|
T Consensus 123 D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrl 189 (1077)
T COG5192 123 D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRL 189 (1077)
T ss_pred H-HHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCC--HHHHHHHHHHH
T ss_conf 8-8888768875213578863666704248899999866489724788862113358--37899999887
No 249
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.32 E-value=6.6e-06 Score=56.67 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=73.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.|.++|....|||+|+-+++. |.-.. .|.- |+.. ..+.... .+++...++|-||.|+-
T Consensus 5 KivlvGd~~VGKTsli~r~~~--~~F~~--------~y~p----------ti~~-~~~~~~~-i~~~~v~l~iwDtaG~e 62 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTT--NAFPK--------EYIP----------TVFD-NYSAQTA-VDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCC----------CCCE-EEEEEEE-ECCEEEEEEEEECCCCC
T ss_conf 999999999899999999972--99998--------6466----------2100-0467899-99999999998588870
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf 5289999999860456999955888883479-9999998---7399789998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQAD---KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~~---~~~lp~ilvINKiDr~ 145 (701)
.|..-.....+-+|++|+|.|...--.-..- .-|..-. ..++|++|+-||.|..
T Consensus 63 ~~~~~~~~~~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~ 120 (191)
T cd01875 63 EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 0356778774478689999857977889999999999999709699789998880102
No 250
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.32 E-value=8.5e-06 Score=55.95 Aligned_cols=108 Identities=24% Similarity=0.304 Sum_probs=72.4
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHH
Q ss_conf 86878897789999999808732142201795613780889870853764079999607778713899981798755289
Q gi|254780264|r 16 MAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTM 95 (701)
Q Consensus 16 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~ 95 (701)
||.-..|||||+-+++ .|.-.. .|. -||-....+.... .+++...+++-||.|.-.|.+
T Consensus 1 vGD~gVGKTsli~R~~--~~~F~~--------~y~----------pTiGvd~~~~~~~-~~~~~i~l~iWDTAGqE~f~s 59 (200)
T smart00176 1 VGDGGTGKTTFVKRHL--TGEFEK--------KYV----------ATLGVEVHPLVFH-TNRGPIRFNVWDTAGQEKFGG 59 (200)
T ss_pred CCCCCCCHHHHHHHHH--CCCCCC--------CCC----------CCEEEEEEEEEEE-ECCEEEEEEEEECCCCCCCCC
T ss_conf 9898878999999994--099999--------978----------8714898999999-899899999998988700011
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH--HHCCCCEEEEECCCCC
Q ss_conf 999999860456999955888883479999-999--8739978999817676
Q gi|254780264|r 96 EVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 96 Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~--~~~~lp~ilvINKiDr 144 (701)
-...-.+-+++||+|.|...--.-.--.-| +.+ ...++|+||+=||+|.
T Consensus 60 l~~~yyr~a~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL 111 (200)
T smart00176 60 LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred CCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 0265505787889996358778999899999999985799988999988757
No 251
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.31 E-value=1.7e-05 Score=54.09 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=70.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|....|||||+-+++.. .-.. .|.-+ =|+-..+..+.+ .+ +....+++.||+|+-.
T Consensus 3 vvllGd~~VGKTSli~rf~~~--~F~~--------~y~~T------iG~d~~~k~i~i--~~--~~~v~l~iwDtaGqe~ 62 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKE--GFGK--------SYKQT------IGLDFFSKRVTL--PG--NLNVTLQVWDIGGQSI 62 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHC--CCCC--------CCCCC------CCEEEEEEEEEE--CC--CCEEEEEEEECCCCCC
T ss_conf 999999997099999999749--8988--------77886------557889999998--79--9469999996998500
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH----HHHHCC---CCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799999----998739---978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR----QADKYS---VPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr----~~~~~~---lp~ilvINKiDr 144 (701)
|..-...-.+-+||+|+|-|...--.-+.-.-|. ...... .+++||=||.|.
T Consensus 63 ~~~~~~~y~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL 121 (215)
T cd04109 63 GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred HHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCH
T ss_conf 23789999975151377414786789998999999999985045778529999754542
No 252
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.31 E-value=7.6e-06 Score=56.28 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=76.0
Q ss_pred HEE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEE
Q ss_conf 252-7999868788977899999998087321422017956137808898708537640-79999607778713899981
Q gi|254780264|r 9 DSR-NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 9 ~iR-Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlID 86 (701)
+|| -|.++|....|||+|+-++.. +.-.. . |. -||-.. ...+.. +++.+.++|.|
T Consensus 3 ~ik~KivlvGd~~VGKTsLi~r~~~--~~F~~----~----y~----------pTi~~~~~~~~~i---~~~~v~l~iwD 59 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPE----N----YV----------PTVFENYTASFEI---DTQRIELSLWD 59 (182)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CEEEEEEEEEEEE---CCEEEEEEEEE
T ss_conf 3048999999999899999999983--99999----8----68----------7353226899999---99999999996
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 79875528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
|+|+-+|..-.....+-+|++|||-|...--.-.. ..-|..-. ..+.|+||+=||.|.
T Consensus 60 TaGqe~f~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DL 121 (182)
T cd04172 60 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred CCCCHHCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 89862012212555127878999964897788999999999999986879988999617101
No 253
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.29 E-value=1.9e-05 Score=53.64 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.++|.-..|||+|+-+++. +.-.. .|.-+..+ ..... +.+ +++.+.+++.||.|.-.
T Consensus 3 IvvlGdsgVGKTSLi~Rf~~--~~F~~--------~y~pTi~d-------~~~k~--i~i---~g~~v~L~IwDTaGqe~ 60 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLG--GRFEE--------QYTPTIED-------FHRKL--YSI---RGEVYQLDILDTSGNHP 60 (247)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCHHH-------EEEEE--EEE---CCEEEEEEEEECCCCCC
T ss_conf 99999899789999999964--96899--------87888353-------18899--999---99999999996766536
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH------------HCCCCEEEEECCCCCC
Q ss_conf 289999999860456999955888883479999-9998------------7399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD------------KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~------------~~~lp~ilvINKiDr~ 145 (701)
|..-.....+-+|++|+|-|...--.-+.-.-| ++.. ..++|+||+=||.|..
T Consensus 61 f~sl~~~y~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~ 126 (247)
T cd04143 61 FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred CCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf 874420131217789999979987899989999999998640010013578887589986655432
No 254
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.27 E-value=1.1e-05 Score=55.19 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=72.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|.+||....|||+|+-++.. +. +.|+ .-||-.. +..+ +.+.+.+++-||.|.-.
T Consensus 3 ivllGd~~VGKTsl~~rf~~--~~------------F~~~-------~~Tig~~---~~~k--~~~~~~l~IwDTaGqE~ 56 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYME--RR------------FKDT-------VSTVGGA---FYLK--QWGPYNISIWDTAGREQ 56 (220)
T ss_pred EEEECCCCCCHHHHHHHHHH--CC------------CCCC-------CCCCCEE---EEEE--ECCEEEEEEEECCCCCC
T ss_conf 99999999889999999972--98------------9998-------8871368---9998--76478899994798622
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH---HHHCCCCEEEEECCCCCC
Q ss_conf 28999999986045699995588888347-999999---987399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ---ADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~---~~~~~lp~ilvINKiDr~ 145 (701)
|.+=...-.|-+|++|+|.|...--.-.- +.-|.. .....+|++||=||.|..
T Consensus 57 f~sl~~~y~r~a~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~ 113 (220)
T cd04126 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred CCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCC
T ss_conf 433268885679889999979898999999999999998479998089998871213
No 255
>pfam00350 Dynamin_N Dynamin family.
Probab=98.27 E-value=7.1e-06 Score=56.44 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=44.7
Q ss_pred EEEEEEECCCCCCCH----HHHHHHHHHHCEEEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEEECCC
Q ss_conf 389998179875528----99999998604569999558888834799-9999987399789998176
Q gi|254780264|r 80 KKLTIIDTPGHVDFT----MEVERSIRVTDGAIALLDSNAGVEPQTET-VWRQADKYSVPRVIFCNKM 142 (701)
Q Consensus 80 ~~iNlIDTPGH~DF~----~Ev~~aL~~~DgailvVDa~eGv~~qT~~-vlr~~~~~~lp~ilvINKi 142 (701)
.-+.||||||.-+-. .-+...++-+|..+.|+||...+..|-.. +.+.+...+-+.+.++||.
T Consensus 101 ~~l~lvDtPGl~s~~~~~~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~ 168 (168)
T pfam00350 101 PGLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168 (168)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 88189827986544433699999998538669999846951666199999997399998389998188
No 256
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=98.27 E-value=4.7e-05 Score=51.17 Aligned_cols=116 Identities=18% Similarity=0.322 Sum_probs=66.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
|=.|++||-..+||+||+-++- .+-.+.+.-- +| |+.-..=.+.+.+ ...|.+-|.||
T Consensus 159 iADVGLvG~PNAGKSTll~~iS---~AkPKIAdYp----FT-----------TL~PnLGvV~~~~----~~~fviADIPG 216 (380)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVS---AAKPKVADYP----FT-----------TLVPNLGVVRVDD----ERSFVIADIPG 216 (380)
T ss_pred ECCCCEEECCCCCCHHHHHHHH---CCCCCCCCCC----CC-----------CCCCEEEEEEECC----CCEEEEEECCC
T ss_conf 5165146369886108998855---5897547887----53-----------3687467999469----86699987775
Q ss_pred CCC-------CHHHHHHHHHHHCEEEEEEECC--CCCCH--HHHHHHHHHH-----HCCCCEEEEECCCCCCCC
Q ss_conf 755-------2899999998604569999558--88883--4799999998-----739978999817676587
Q gi|254780264|r 90 HVD-------FTMEVERSIRVTDGAIALLDSN--AGVEP--QTETVWRQAD-----KYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 90 H~D-------F~~Ev~~aL~~~DgailvVDa~--eGv~~--qT~~vlr~~~-----~~~lp~ilvINKiDr~~~ 147 (701)
-+. ...+-.+-+.=|..-+-|||+. ++--+ +-+.+.+++. -.+-|.++++||||.+..
T Consensus 217 LIeGAs~G~GLG~~FLrHieRt~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~ 290 (380)
T PRK12298 217 LIEGAAEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDE 290 (380)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCH
T ss_conf 55775558772899999987535899999688777519999999999999985976605987999988548997
No 257
>PRK13768 GTPase; Provisional
Probab=98.23 E-value=3.8e-05 Score=51.79 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=44.0
Q ss_pred EEEEECCC------CCCCHHHHHHHHHHHC--EEEEEEECCCCCCHHH-----HHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 99981798------7552899999998604--5699995588888347-----999999987399789998176765875
Q gi|254780264|r 82 LTIIDTPG------HVDFTMEVERSIRVTD--GAIALLDSNAGVEPQT-----ETVWRQADKYSVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 82 iNlIDTPG------H~DF~~Ev~~aL~~~D--gailvVDa~eGv~~qT-----~~vlr~~~~~~lp~ilvINKiDr~~~d 148 (701)
+-++|||| |.+........|.-.. .++.++|+.-=..+.+ -..+....+.++|.|.|+||+|-+..+
T Consensus 99 Y~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~L~a~s~m~~l~lP~inVlsK~Dll~~~ 178 (253)
T PRK13768 99 YVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLLLLALSVQLRLGLPQIPVLNKIDLLSEE 178 (253)
T ss_pred EEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHH
T ss_conf 59982687443222340799999998636862899984505637887999999999999997399979986768627837
No 258
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.22 E-value=1.7e-05 Score=53.97 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=72.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE-EEEECCCCCCCEEEEEEECCC
Q ss_conf 2799986878897789999999808732142201795613780889870853764079-999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~-sl~~~~~~~~~~~iNlIDTPG 89 (701)
+=|.++|....|||||+-++.. |.-.. .|. -|+...-. .+. .+++.+.+++.||+|
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~--~~f~~--------~y~----------pTi~~~~~~~i~---v~~~~v~l~iwDTaG 58 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE--------EYH----------PTVFENYVTDCR---VDGKPVQLALWDTAG 58 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--CCCCC--------CCC----------CCEEEEEEEEEE---ECCEEEEEEEEECCC
T ss_conf 1999999899768999999982--98999--------878----------866789899999---999999999997888
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479-999-9998--739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVW-RQAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vl-r~~~--~~~lp~ilvINKiDr 144 (701)
+-+|..-.....+-+|++|||.|...--.-+.- .-| ..+. ..++|+||+-||.|-
T Consensus 59 ~e~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL 117 (187)
T cd04129 59 QEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred CCCCCCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 70345460412338858999702698667999999999999985879988999886001
No 259
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.21 E-value=1.7e-05 Score=54.05 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCE--EEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 7999868788977899999998087321422017956137808898708537--64079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITI--TSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi--~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-|+++|...-|||+|+-+++. |.-.. ..| | .|+ ....-.+.. ++....+++.||+|
T Consensus 2 KVvllGd~gVGKTSLi~rf~~--~~f~~-------~~y-~---------~t~~~d~~~k~v~v---d~~~~~l~i~Dt~g 59 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD-------HAY-D---------ASGDDDTYERTVSV---DGEESTLVVIDHWE 59 (221)
T ss_pred EEEEECCCCCHHHHHHHHHHH--CCCCC-------CCC-C---------CCCCEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 799999899709999999981--98698-------667-8---------74424889999999---99998999998987
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 75528999999986045699995588888347-99999998----739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~----~~~lp~ilvINKiDr 144 (701)
.-+|... ...-..+|++|||-|...--.-+- +..+.++. ..++|+|||=||+|.
T Consensus 60 ~e~~~~~-~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL 118 (221)
T cd04148 60 QEMWTED-SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred CHHHHHH-HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCH
T ss_conf 3126666-5653068689999964667788889999999998648999519998535666
No 260
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.20 E-value=3.1e-05 Score=52.32 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=72.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|.++|.-..|||+|+-++.. +.-.. + | --||-.. ..++.+ +++.+.++|-||.|.-
T Consensus 4 iVlvGD~~VGKTsLl~~f~~--~~F~~--~------y----------~pTi~~~~~~~~~v---d~~~v~L~iWDTAGqE 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAK--DAYPG--S------Y----------VPTVFENYTASFEI---DKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--C------C----------CCCEEEEEEEEEEE---CCEEEEEEEECCCCCC
T ss_conf 99989899898999999963--99999--8------4----------78458778999999---9999999997688850
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
+|..=.....+-+|++|||.|...--.-+- ..-|..-. ..++|+|||=||+|.
T Consensus 61 ~y~~lr~~yyr~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DL 117 (222)
T cd04173 61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 345567875036989999983897788999999999999985899978999587424
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.19 E-value=1.2e-05 Score=54.89 Aligned_cols=113 Identities=16% Similarity=0.278 Sum_probs=78.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
.=.+++||-.-.|||||.-+| ++.-+..++-. ++ |...-+--|.|++ -.|.|+|+||
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~----FT-----------Tl~~vPG~l~Y~g-----a~IQild~Pg 119 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYP----FT-----------TLEPVPGMLEYKG-----AQIQLLDLPG 119 (365)
T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCCCCCCCCC----CE-----------ECCCCCCEEEECC-----CEEEEECCCC
T ss_conf 738999768874589999887---68876434567----41-----------0244574475478-----1699972763
Q ss_pred CCCC-------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CEEEEECCCCCCC
Q ss_conf 7552-------8999999986045699995588888347999999987399-----7899981767658
Q gi|254780264|r 90 HVDF-------TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSV-----PRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF-------~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~l-----p~ilvINKiDr~~ 146 (701)
-+.= ..|+.++.|-||..++|+|+.+.... -+.+.+.+...|+ |+-+.|-|=++-+
T Consensus 120 ii~gas~g~grG~~vls~~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gG 187 (365)
T COG1163 120 IIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGG 187 (365)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHH-HHHHHHHHHHCCEEECCCCCCEEEEEECCCC
T ss_conf 1257656888764654652158889999716888248-8999999985676821799965999952598
No 262
>PRK11058 putative GTPase HflX; Provisional
Probab=98.19 E-value=2.6e-05 Score=52.85 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=37.6
Q ss_pred EEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECC-CCEEEEEEEEEHHHHCCHHH
Q ss_conf 9801789999838577457999997277079745358-98399999960437338478
Q gi|254780264|r 605 LLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR-SVYVVIDAHVPLSCMFKYVD 661 (701)
Q Consensus 605 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~-~~~~~i~a~iP~~e~~gf~~ 661 (701)
|.+-+..+++..|.+. |.+.+-|. ..|.|.+++.. .+...++..+|..+..-|..
T Consensus 361 L~~~~~~~~l~iP~~~-g~l~a~l~-~~g~V~~e~y~e~G~~~l~vrl~~~d~~Rl~k 416 (426)
T PRK11058 361 LSGEVAQHTLRLPPQE-GRLRSRFY-QLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCK 416 (426)
T ss_pred CCCCCEEEEEEECHHH-HHHHHHHH-HCCEEEEEEECCCCCEEEEEEECHHHHHHHHH
T ss_conf 0337689999978652-28999998-35938999987998099999978999999988
No 263
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.18 E-value=5.8e-05 Score=50.58 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=76.0
Q ss_pred CHHHEE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEE
Q ss_conf 710252-7999868788977899999998087321422017956137808898708537640-79999607778713899
Q gi|254780264|r 6 KIEDSR-NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLT 83 (701)
Q Consensus 6 ~~e~iR-Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iN 83 (701)
++-.+| -|.++|....|||+|+-++... .-.. + | --||.-. ...+.+ +++...++
T Consensus 8 ~p~~~~~KiVlVGD~~VGKTsLl~~~~~~--~F~~--~------y----------~pTv~~~~~~~i~v---~~~~v~L~ 64 (232)
T cd04174 8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKD--CYPE--T------Y----------VPTVFENYTAGLET---EEQRVELS 64 (232)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHC--CCCC--C------C----------CCCEEEEEEEEEEE---CCEEEEEE
T ss_conf 99855889999998998999999999739--8999--8------5----------88368888999999---99999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHH-HHH--HCCCCEEEEECCCCC
Q ss_conf 98179875528999999986045699995588888347-99999-998--739978999817676
Q gi|254780264|r 84 IIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWR-QAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 84 lIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr-~~~--~~~lp~ilvINKiDr 144 (701)
|-||-|+-+|..-.....+-+|++|||.|...--.-.. ..-|. ++. ..++|+|||=||+|.
T Consensus 65 lWDTAGqE~y~~lr~~yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DL 129 (232)
T cd04174 65 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred EEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHC
T ss_conf 98389970100367997406878999996898799998999999999986899978999876021
No 264
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=98.15 E-value=0.00011 Score=48.89 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=67.3
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-|-.|++||-..+||+||+-++- .+-.+.+.-. ++ |+.-..=.+.+.+ +..+.+.|-|
T Consensus 157 liADVGLvG~PNaGKSTll~~is---~A~pkIa~Yp----FT-----------Tl~P~lGvv~~~~----~~~~~iADiP 214 (429)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVS---NAKPKIANYH----FT-----------TLVPNLGVVETDD----GRSFVMADLP 214 (429)
T ss_pred EECCCCEEECCCCCHHHHHHHHH---CCCCCCCCCC----CC-----------CCCCEEEEEEECC----CCEEEEEECC
T ss_conf 53276336479984578998875---4897557877----40-----------2576666898569----8669996267
Q ss_pred CCCC-------CHHHHHHHHHHHCEEEEEEECC--CCCCH--HHHHHHHHHH-----HCCCCEEEEECCCCCCC
Q ss_conf 8755-------2899999998604569999558--88883--4799999998-----73997899981767658
Q gi|254780264|r 89 GHVD-------FTMEVERSIRVTDGAIALLDSN--AGVEP--QTETVWRQAD-----KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~D-------F~~Ev~~aL~~~DgailvVDa~--eGv~~--qT~~vlr~~~-----~~~lp~ilvINKiDr~~ 146 (701)
|-+. ...+-.+-+.=|..-+.|||+. ++--| +-+.+-+.+. -..-|.|+++||||.+.
T Consensus 215 GLIeGA~~g~GLG~~FLrHieR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~ 288 (429)
T PRK12297 215 GLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPE 288 (429)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCC
T ss_conf 45677446888668888876624679999978787777989999999999998689872696699997645857
No 265
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.12 E-value=5.9e-05 Score=50.55 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996077787138999817987-
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH- 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH- 90 (701)
||+|.|..++||+||+.+|. |. |.-+.|.+-+ |.+ .++.....|+..+.. -+.|.|.||-
T Consensus 3 ~iaVtGesGaGKSSfINAlR---Gl----~~~d~~aA~t---------Gv~-eTT~~~~~Y~~p~~p--nv~lwDlPG~G 63 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR---GV----GHEEEGAAPT---------GVV-ETTMKRTPYPHPKFP--NVTLWDLPGIG 63 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC----CCCCCCCCCC---------CCC-CCCCCCEECCCCCCC--CCEEECCCCCC
T ss_conf 79995589986899999986---88----9887775888---------887-467786204799999--87697289999
Q ss_pred -CCCHHHHH---HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf -55289999---9998604569999558888834799999998739978999817676587
Q gi|254780264|r 91 -VDFTMEVE---RSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 91 -~DF~~Ev~---~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
..|..+.. -.+...|--|++.| +-....-..+++.+.+.+.+..+|.||+|+...
T Consensus 64 t~~f~~~~Yl~~~~~~~yD~fiiiss--~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~ 122 (197)
T cd04104 64 STAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 87659899998658554578999838--864142699999999809928999861214000
No 266
>KOG1532 consensus
Probab=98.11 E-value=1.6e-05 Score=54.26 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=73.1
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC----------------EECCCCEECCCHHHHHH------HCCCEE
Q ss_conf 10252799986878897789999999808732142----------------20179561378088987------085376
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIG----------------EVHDGSATMDWMEQEQE------RGITIT 64 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g----------------~v~~g~~~~D~~~~E~e------RgITi~ 64 (701)
+++--.|-++|-.++||||++.+|..+...-..++ .++-.. .-++.+.=++ -||+--
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRD-tVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRD-TVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCHHHH
T ss_conf 568707999944778841399999999862369980886788885488866775665-4309999998388998640335
Q ss_pred EEEEEEEE------CCCCCCCEEEEEEECCCCCC-C----HHHHH-HHHH-HHCE-EEEEEECCCCCCHHH--HHHHHH-
Q ss_conf 40799996------07778713899981798755-2----89999-9998-6045-699995588888347--999999-
Q gi|254780264|r 65 SASTTVFW------PGRDGGQKKLTIIDTPGHVD-F----TMEVE-RSIR-VTDG-AIALLDSNAGVEPQT--ETVWRQ- 127 (701)
Q Consensus 65 ss~~sl~~------~~~~~~~~~iNlIDTPGH~D-F----~~Ev~-~aL~-~~Dg-ailvVDa~eGv~~qT--~~vlr~- 127 (701)
.+.....+ -......+.+-||||||.+. | ++-+. -+|. .-+. .+-|||.--.-++.| -..+..
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 89999878999999997422047799748880689984278501586676139859999944776788416998899999
Q ss_pred --HHHCCCCEEEEECCCCCCCCCH
Q ss_conf --9873997899981767658755
Q gi|254780264|r 128 --ADKYSVPRVIFCNKMDKMGADF 149 (701)
Q Consensus 128 --~~~~~lp~ilvINKiDr~~~d~ 149 (701)
+.+.++|.|++.||.|-...+|
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532 175 SILYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHHHHCCCCEEEEEECCCCCCCHH
T ss_conf 999862687699971434456188
No 267
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=98.09 E-value=3.9e-06 Score=58.11 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=63.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC--
Q ss_conf 799986878897789999999808732142201795613780889870853764079999607778713899981798--
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG-- 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG-- 89 (701)
-+.++|.++||||||+.+|- +..++- =|+.+|.+ .+ =+.|||||
T Consensus 2 r~~f~G~~gCGKTTL~q~L~--g~~~~Y-----------------------KKTQAvE~--~~-------k~~IDTPGEY 47 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ--GEEIKY-----------------------KKTQAVEY--KD-------KEAIDTPGEY 47 (144)
T ss_pred EEEEEECCCCCHHHHHHHCC--CCCCCE-----------------------EEEEEEEE--CC-------CCCCCCCCCC
T ss_conf 17887158887443543116--873210-----------------------23344542--58-------8865598500
Q ss_pred --CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-HCCCCEEEEECCCCCCCCC
Q ss_conf --7552899999998604569999558888834799999998-7399789998176765875
Q gi|254780264|r 90 --HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQAD-KYSVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 90 --H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~-~~~lp~ilvINKiDr~~~d 148 (701)
|--+..=....+.=+|--++|-+|.++-+.=. =.-+. -.+-|.|=+|.|+|-...|
T Consensus 48 ~enr~~Y~AL~vtaaDAd~i~lV~~a~~~~~~f~---PgF~~~f~kK~~IG~vTK~DLA~~d 106 (144)
T TIGR02528 48 VENRRYYSALIVTAADADVIALVQSATDEESRFS---PGFASIFVKKEVIGIVTKIDLAEAD 106 (144)
T ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCCCCH
T ss_conf 1575237888888721023667735776422378---5000236788634788403788773
No 268
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=98.05 E-value=0.00024 Score=46.62 Aligned_cols=110 Identities=25% Similarity=0.418 Sum_probs=62.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-|=.|++||-..+||+||+-++- .+-.+++.-. ++ |+.-..=.+.+ ++..|.+.|-|
T Consensus 158 ~iADVGLvG~PNaGKSTLl~~iS---~AkpkIA~Yp----FT-----------TL~PnLGvv~~-----~d~~f~iADiP 214 (495)
T PRK12296 158 SVADVGLVGFPSAGKSSLISAIS---AAKPKIADYP----FT-----------TLVPNLGVVSA-----GDHTFTVADVP 214 (495)
T ss_pred EEECCCEECCCCCCHHHHHHHHH---CCCCCCCCCC----CC-----------CCCCEEEEEEC-----CCCEEEEEECC
T ss_conf 86131101189996158998875---4887657877----55-----------45754678970-----79528998566
Q ss_pred CCC-----------CCHHHHHHHHHHHCEEEEEEECCC---CCCH--HHHHHHHHHHHC--------------CCCEEEE
Q ss_conf 875-----------528999999986045699995588---8883--479999999873--------------9978999
Q gi|254780264|r 89 GHV-----------DFTMEVERSIRVTDGAIALLDSNA---GVEP--QTETVWRQADKY--------------SVPRVIF 138 (701)
Q Consensus 89 GH~-----------DF~~Ev~~aL~~~DgailvVDa~e---Gv~~--qT~~vlr~~~~~--------------~lp~ilv 138 (701)
|-+ +|.--++| |-.-+.|||+.. |--| .-+.+-+.+... .-|.|++
T Consensus 215 GLIeGAs~g~GLG~~FLRHieR----~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVv 290 (495)
T PRK12296 215 GLIPGASEGRGLGLDFLRHIER----CAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVV 290 (495)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEE
T ss_conf 4346500389843999998752----547999996887666789699999999999971914304433232101965999
Q ss_pred ECCCCCC
Q ss_conf 8176765
Q gi|254780264|r 139 CNKMDKM 145 (701)
Q Consensus 139 INKiDr~ 145 (701)
+||||-+
T Consensus 291 lNKiDlp 297 (495)
T PRK12296 291 LNKIDVP 297 (495)
T ss_pred EECCCCC
T ss_conf 9665675
No 269
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.05 E-value=4e-06 Score=58.03 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=63.4
Q ss_pred CCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CC
Q ss_conf 5420103321165467100001101334568368983265541110453210474454200356732641--3874--44
Q gi|254780264|r 313 PLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ET 388 (701)
Q Consensus 313 pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~ 388 (701)
||.+.|..++.... |....+||.||+++.||+|.....+++.+|.++... ..+++.|.||+.|++ .|++ ++
T Consensus 1 P~R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~A~aG~~V~l~L~gid~~~i 75 (83)
T cd03698 1 PFRLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CEEEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEECCCCEEEEEEEEEC----CEEECEECCCCEEEEEECCCCHHHC
T ss_conf 97989974798699-739999990258728999999789988999999999----9172988899979999848989994
Q ss_pred CCCCCCCC
Q ss_conf 32110127
Q gi|254780264|r 389 TTGDTLCD 396 (701)
Q Consensus 389 ~~gdTl~~ 396 (701)
..|+.||+
T Consensus 76 ~rG~vlcs 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEEC
T ss_conf 79889949
No 270
>KOG1489 consensus
Probab=98.00 E-value=0.00011 Score=48.83 Aligned_cols=110 Identities=25% Similarity=0.393 Sum_probs=50.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE-EEEEEC
Q ss_conf 2527999868788977899999998087321422017956137808898708537640799996077787138-999817
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKK-LTIIDT 87 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~-iNlIDT 87 (701)
-|-++++||-..+||+||.-+|- .+-.+.+.- .+| |++-..-+..|.+ |. |.+-|-
T Consensus 195 siadvGLVG~PNAGKSTLL~als---~AKpkVa~Y----aFT-----------TL~P~iG~v~ydd-----f~q~tVADi 251 (366)
T KOG1489 195 SIADVGLVGFPNAGKSTLLNALS---RAKPKVAHY----AFT-----------TLRPHIGTVNYDD-----FSQITVADI 251 (366)
T ss_pred EECCCCEECCCCCCHHHHHHHHH---CCCCCCCCC----CEE-----------EECCCCCEEECCC-----CCEEEECCC
T ss_conf 10554321289886788987764---058754554----203-----------4446411251354-----514685047
Q ss_pred CCCC-----------CCHHHHHHHHHHHCEEEEEEECCCCC--CH--HHHHHHHHHHHC-----CCCEEEEECCCCCC
Q ss_conf 9875-----------52899999998604569999558888--83--479999999873-----99789998176765
Q gi|254780264|r 88 PGHV-----------DFTMEVERSIRVTDGAIALLDSNAGV--EP--QTETVWRQADKY-----SVPRVIFCNKMDKM 145 (701)
Q Consensus 88 PGH~-----------DF~~Ev~~aL~~~DgailvVDa~eGv--~~--qT~~vlr~~~~~-----~lp~ilvINKiDr~ 145 (701)
||-+ +|.--++| |+.-++|||+..+. .| |-+.+|+.+... .-|.++|+||||-+
T Consensus 252 PGiI~GAh~nkGlG~~FLrHiER----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489 252 PGIIEGAHMNKGLGYKFLRHIER----CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHH----HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 65344543467654899998875----334899997787555887899999999999986542358538997446736
No 271
>COG2262 HflX GTPases [General function prediction only]
Probab=97.99 E-value=0.00033 Score=45.77 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=14.0
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 999999860456999955888883479999999
Q gi|254780264|r 96 EVERSIRVTDGAIALLDSNAGVEPQTETVWRQA 128 (701)
Q Consensus 96 Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~ 128 (701)
|........+.-+|++|-.=. -+|.+++.+.+
T Consensus 60 Ei~~~v~~~~ad~VIf~~~Ls-P~Q~~NLe~~l 91 (411)
T COG2262 60 EIAEAVEETGADLVIFDHELS-PSQLRNLEKEL 91 (411)
T ss_pred HHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHH
T ss_conf 999999843999999999689-88999999997
No 272
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=97.96 E-value=0.00022 Score=46.91 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|-+.|.-.+||||..- .++..= .. .|++- -|-|++..-.++.+. +...+|+.|+||..+
T Consensus 2 iLLMG~~~sGKTSi~~-vIF~~~-~p-----------~dT~~----L~~T~~ve~~~v~~~----~~l~l~iwD~pGq~~ 60 (230)
T pfam04670 2 VLLMGLRGSGKSSMRS-IIFSNY-SP-----------RDTLR----LGATIDVEQSHVRFL----GNLTLNLWDCPGQDD 60 (230)
T ss_pred EEEECCCCCCHHHHHH-HHHCCC-CH-----------HHHCC----CCCCCCEEEEEEECC----CCCEEEEEECCCCHH
T ss_conf 7875689998777699-986799-82-----------14120----257777677877416----873689997698353
Q ss_pred CHHH-----HHHHHHHHCEEEEEEECCC-CCC---HHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHH-HHHHCCCC
Q ss_conf 2899-----9999986045699995588-888---347999999987--3997899981767658755556-66411110
Q gi|254780264|r 93 FTME-----VERSIRVTDGAIALLDSNA-GVE---PQTETVWRQADK--YSVPRVIFCNKMDKMGADFYRS-VEMISSRL 160 (701)
Q Consensus 93 F~~E-----v~~aL~~~DgailvVDa~e-Gv~---~qT~~vlr~~~~--~~lp~ilvINKiDr~~~d~~~~-l~~i~~~l 160 (701)
|... ...-++-+..-|-|+|+-. -.. ..-+..+..+.+ .+++.-+||.|||.+..|.+.. .+++++++
T Consensus 61 f~e~~~~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~r~~~~~~~~~~i 140 (230)
T pfam04670 61 FMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDERKEIFEDRKEEI 140 (230)
T ss_pred HHHHHCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 54412002235476447889999968886099999999999999998399988999996035888667899999999999
No 273
>KOG0090 consensus
Probab=97.95 E-value=5.1e-05 Score=50.93 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=78.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
+.|-++|--|+|||+|--.|+. | .. ..|++ ||.-+.+.+.+.+ ....|||-|||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~--g--s~------~~Tvt-----------Siepn~a~~r~gs-----~~~~LVD~PGH 92 (238)
T KOG0090 39 NAVLLVGLSDSGKTSLFTQLIT--G--SH------RGTVT-----------SIEPNEATYRLGS-----ENVTLVDLPGH 92 (238)
T ss_pred CCEEEEECCCCCCEEEEEEHHC--C--CC------CCEEE-----------EECCCEEEEEECC-----CCEEEEECCCC
T ss_conf 8689993278983355420013--8--73------67032-----------1046613576368-----62388757995
Q ss_pred CCCHHHHHHHHH---HHCEEEEEEECCCCC---CHHHHHHHHHH-----HHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 552899999998---604569999558888---83479999999-----87399789998176765875555666
Q gi|254780264|r 91 VDFTMEVERSIR---VTDGAIALLDSNAGV---EPQTETVWRQA-----DKYSVPRVIFCNKMDKMGADFYRSVE 154 (701)
Q Consensus 91 ~DF~~Ev~~aL~---~~DgailvVDa~eGv---~~qT~~vlr~~-----~~~~lp~ilvINKiDr~~~d~~~~l~ 154 (701)
.-.-.-..--+. -+-+.|.|||+++=. ....+.+...+ ...+.|.++..||-|..-+.....+.
T Consensus 93 ~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090 93 SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHHH
T ss_conf 889999998734655221599998332246006799999999998601234799889995552232138599999
No 274
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=97.92 E-value=0.00038 Score=45.32 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=47.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+=++|.-+.|||||+..|+.. ..+.... .+......++...|.+....+.- ++-...+|+|||||.-
T Consensus 6 nimvvG~sGlGKTTfiNtL~~~-~~~~~~~--------~~~~~~~~~~t~~i~~~~~~iee---~g~~l~LtiiDTpGfG 73 (280)
T pfam00735 6 TLMVVGESGLGKTTLINTLFLT-DLYPERG--------IPGPSEKIKKTVEIKATTVEIEE---DGVKLNLTVIDTPGFG 73 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CCCCCCC--------CCCCCCCCCCCCCEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 9999779999789999998578-5778667--------88843355677534889999988---9989999999899842
Q ss_pred CCHHHHHHHHH
Q ss_conf 52899999998
Q gi|254780264|r 92 DFTMEVERSIR 102 (701)
Q Consensus 92 DF~~Ev~~aL~ 102 (701)
|..+....--.
T Consensus 74 d~i~n~~~~~~ 84 (280)
T pfam00735 74 DAIDNSNCWKP 84 (280)
T ss_pred CCCCHHHHHHH
T ss_conf 33451666999
No 275
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.91 E-value=0.00052 Score=44.47 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=63.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+=++|.-+.|||||+..|+.. ..... ...-+.....+++...|.+...-+.- ++-...+|+|||||.-
T Consensus 6 nimVvG~sGlGKsTfiNtLf~~-~~~~~-------~~~~~~~~~~~~~t~~i~~~~~~i~e---~g~~l~LtviDTpGfG 74 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNT-KLIPS-------DYPPDPAEEHIDKTVEIKSSKAEIEE---NGVKLKLTVIDTPGFG 74 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CCCCC-------CCCCCCHHHCCCCCCEEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 9999768999889999997478-57787-------77788132056888258999999963---9989999999768841
Q ss_pred CCHHHHHHHHHH----------------------------HCEEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 528999999986----------------------------0456999955-88888347999999987399789998176
Q gi|254780264|r 92 DFTMEVERSIRV----------------------------TDGAIALLDS-NAGVEPQTETVWRQADKYSVPRVIFCNKM 142 (701)
Q Consensus 92 DF~~Ev~~aL~~----------------------------~DgailvVDa-~eGv~~qT~~vlr~~~~~~lp~ilvINKi 142 (701)
|+.+....--.+ +..|+-.+.. .-|+.+---.+++. +..++..|.||-|-
T Consensus 75 d~i~n~~~~~~I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~-Ls~~vNvIPVIaKA 153 (276)
T cd01850 75 DNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR-LSKRVNIIPVIAKA 153 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH-HCCCCCEEEEEECC
T ss_conf 22360340999999999999999999853145788877744899999678888887999999999-62756456678516
Q ss_pred CCCC
Q ss_conf 7658
Q gi|254780264|r 143 DKMG 146 (701)
Q Consensus 143 Dr~~ 146 (701)
|-+-
T Consensus 154 DtlT 157 (276)
T cd01850 154 DTLT 157 (276)
T ss_pred CCCC
T ss_conf 6699
No 276
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.90 E-value=1.3e-05 Score=54.80 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=40.1
Q ss_pred EEEEECCCCC------CCHHHHHHHHHH-HCEEEEEEECCCCCCHH-----HHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9998179875------528999999986-04569999558888834-----79999999873997899981767658
Q gi|254780264|r 82 LTIIDTPGHV------DFTMEVERSIRV-TDGAIALLDSNAGVEPQ-----TETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 82 iNlIDTPGH~------DF~~Ev~~aL~~-~DgailvVDa~eGv~~q-----T~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
+-|+||||-+ +-.......|.- .=+++.++|+.-=-.+. ....+-...+.++|.|.++||+|-+.
T Consensus 92 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP~vnvlsK~Dl~~ 168 (234)
T pfam03029 92 YYLFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLPFVVALNKFDLLS 168 (234)
T ss_pred EEEEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC
T ss_conf 69983698357654002699999997128738999842577468888999999999999974899443100041354
No 277
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.88 E-value=0.0001 Score=49.03 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=65.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
|+++|...-|||+|+-+++. |.-.. ++.+. +-..+ . +... +++.+.+.+.||.|...
T Consensus 3 ivllGd~~VGKTsl~~Rf~~--~~F~~-----------~~~pt----~~~~~-~--~~~v---dg~~~~l~i~DTaG~~~ 59 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT--GSYVQ-----------LESPE----GGRFK-K--EVLV---DGQSHLLLIRDEGGAPD 59 (158)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC-----------CCCCC----CCEEE-E--EEEE---CCEEEEEEEEECCCCCC
T ss_conf 99999699879999999980--94787-----------44466----44179-9--9999---99999999995899834
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH----CCCCEEEEECCCCC
Q ss_conf 28999999986045699995588888347-999999987----39978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQADK----YSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~~----~~lp~ilvINKiDr 144 (701)
| +-.+-+||+|+|-|...--.-+. +..+++..+ ..+|+||+=||-|-
T Consensus 60 ~-----~~~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl 111 (158)
T cd04103 60 A-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred H-----HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 3-----332149989999988988899999999999998559789968999877003
No 278
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.86 E-value=1.3e-05 Score=54.83 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=59.1
Q ss_pred CCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CC
Q ss_conf 5420103321165467100001101334568368983265541110453210474454200356732641--3874--44
Q gi|254780264|r 313 PLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ET 388 (701)
Q Consensus 313 pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~ 388 (701)
||.+-|..++. ..|....+||.||+++.||+|.....+.+.+|.++... ..++++|.||+-+++ .|++ ++
T Consensus 1 PlR~pi~dv~k--g~G~vV~G~vesG~v~~Gd~v~i~P~~~~~~Vk~I~~~----~~~v~~A~aGd~V~l~L~gvd~~~i 74 (82)
T cd04089 1 PLRLPIIDKYK--DMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CEEEEEEEEEE--CCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEEC----CEEECEECCCCCEEEEECCCCHHHC
T ss_conf 97826878992--89889999993677829999999589988999999999----9795888699732688848888844
Q ss_pred CCCCCCCC
Q ss_conf 32110127
Q gi|254780264|r 389 TTGDTLCD 396 (701)
Q Consensus 389 ~~gdTl~~ 396 (701)
..|+.||+
T Consensus 75 ~rG~vlcs 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEECC
T ss_conf 78879959
No 279
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.84 E-value=0.00026 Score=46.45 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=59.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9998179875528999999986045699995588888347999999987399789-998176765875555666411110
Q gi|254780264|r 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRV-IFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~i-lvINKiDr~~~d~~~~l~~i~~~l 160 (701)
+-+||||.-. ...+..++.++|.+++|+..----..-+.++++.+.+.+.+.+ +++||.|+-....+...+++.+.+
T Consensus 65 ~viiD~ppg~--~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~~~~~~~~~~~~~~~l 142 (179)
T cd02036 65 YILIDSPAGI--ERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEIL 142 (179)
T ss_pred EEEEECCCCC--CHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999799998--88999999846812563788588999999999999825996469998454676663677999999855
Q ss_pred CCCC
Q ss_conf 2683
Q gi|254780264|r 161 GANP 164 (701)
Q Consensus 161 ~~~~ 164 (701)
+.+.
T Consensus 143 ~~~v 146 (179)
T cd02036 143 GVPL 146 (179)
T ss_pred CCCE
T ss_conf 9967
No 280
>PHA02518 ParA-like protein; Provisional
Probab=97.83 E-value=0.00016 Score=47.70 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=68.6
Q ss_pred EEEECC-CCCCHHHHHHHHHH---HCCCCCCCCEECCCCEECCCHHHHHHHCC-CEEEEEEEEEEC---CCCCCCEEEEE
Q ss_conf 999868-78897789999999---80873214220179561378088987085-376407999960---77787138999
Q gi|254780264|r 13 FGIMAH-IDAGKTTTTERILY---YAGKSHKIGEVHDGSATMDWMEQEQERGI-TITSASTTVFWP---GRDGGQKKLTI 84 (701)
Q Consensus 13 v~iiaH-vd~GKTTL~d~LL~---~~g~i~~~g~v~~g~~~~D~~~~E~eRgI-Ti~ss~~sl~~~---~~~~~~~~iNl 84 (701)
|+|..+ =+.||||++=.|-+ ..|.-=-+-+.|-...-++|.+. ++.+- .+......-... ..-...|-+-+
T Consensus 3 Iav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~-r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~vi 81 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEA-REEGEPLIPVVRMGKSIRADLPKVASGYDYVV 81 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-CCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEE
T ss_conf 99980899974999999999999978994899977999678899985-22689974012136779999997406788899
Q ss_pred EECCCCCCCHHHHHHHHHHHCEEEEEEECC----CCCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf 817987552899999998604569999558----888834799999998--73997899981767658755556664111
Q gi|254780264|r 85 IDTPGHVDFTMEVERSIRVTDGAIALLDSN----AGVEPQTETVWRQAD--KYSVPRVIFCNKMDKMGADFYRSVEMISS 158 (701)
Q Consensus 85 IDTPGH~DF~~Ev~~aL~~~DgailvVDa~----eGv~~qT~~vlr~~~--~~~lp~ilvINKiDr~~~d~~~~l~~i~~ 158 (701)
|||||+. +..+..+|.++|.+|+-+... .| ..++..+++.+. ..+++...+++............+.+...
T Consensus 82 ID~pp~~--~~~~~~al~aaD~vliP~~ps~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 158 (211)
T PHA02518 82 VDGAPQD--SELARAALRIADMVLIPVQPSPFDIWA-APDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKALA 158 (211)
T ss_pred ECCCCCC--HHHHHHHHHHCCEEEEECCCCHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8899974--299999999589699963786878999-9999999999998665675168886235866569999999999
Q ss_pred CCCCC
Q ss_conf 10268
Q gi|254780264|r 159 RLGAN 163 (701)
Q Consensus 159 ~l~~~ 163 (701)
.++..
T Consensus 159 ~~~~~ 163 (211)
T PHA02518 159 GYGLP 163 (211)
T ss_pred HCCCC
T ss_conf 86998
No 281
>KOG1191 consensus
Probab=97.78 E-value=0.00069 Score=43.69 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=3.9
Q ss_pred HHHHHHHHHC
Q ss_conf 4889898717
Q gi|254780264|r 275 PLLDAVVDYL 284 (701)
Q Consensus 275 ~LLd~i~~~l 284 (701)
.|+|.|..++
T Consensus 247 ~l~d~v~s~l 256 (531)
T KOG1191 247 SLLDDVLSHL 256 (531)
T ss_pred HHHHHHHHHH
T ss_conf 8899999888
No 282
>KOG0395 consensus
Probab=97.75 E-value=5.2e-05 Score=50.91 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=78.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
-..+.++|.-.-|||+|+=+++... - ++ .|.-+.++--.+.+++. ++.+.+.++||+|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f-----~~---~y~ptied~y~k~~~v~------------~~~~~l~ilDt~g 60 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFLTGR--F-----VE---DYDPTIEDSYRKELTVD------------GEVCMLEILDTAG 60 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEECCCC--C-----CC---CCCCCCCCCEEEEEEEC------------CEEEEEEEEECCC
T ss_conf 1479997789888530578963575--5-----44---34797676315999989------------9788999982888
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHH----HHHHHHCCCCEEEEECCCCCCC
Q ss_conf 75528999999986045699995588888347-999----9999873997899981767658
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETV----WRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~v----lr~~~~~~lp~ilvINKiDr~~ 146 (701)
-.+|.+.=...++-.||-++|.+...--.-+. +.+ .|.-....+|++++-||.|...
T Consensus 61 ~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395 61 QEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred CCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHH
T ss_conf 53476888877554868999998988889999999999998640767788799988555323
No 283
>KOG0078 consensus
Probab=97.70 E-value=0.002 Score=40.73 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=81.0
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCC---CCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCC
Q ss_conf 98656710252799986878897789999999808---732142201795613780889870853764079999607778
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAG---KSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDG 77 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g---~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~ 77 (701)
|+++ +.+..=-|.++|..+.|||.++.++.-.+- -++.+| |-.+... ... ++
T Consensus 4 ~~~~-~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG-------------------IDFk~kt--i~l---~g 58 (207)
T KOG0078 4 MAKE-DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG-------------------IDFKIKT--IEL---DG 58 (207)
T ss_pred CCCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEE-------------------EEEEEEE--EEE---CC
T ss_conf 4457-845189999977898765576665440667677651587-------------------8878889--983---89
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEECCCCCCC
Q ss_conf 713899981798755289999999860456999955888883479999----999873997899981767658
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW----RQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl----r~~~~~~lp~ilvINKiDr~~ 146 (701)
+.-+..+.||-|---|..=..+-.|-++|++||+|...-..-.--.-| ++-..+.+|.+||=||+|-..
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 0899999972430567889999986548249999845257777799999999863788874898511412101
No 284
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.69 E-value=8.3e-05 Score=49.60 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||-++|..+.||||+.-.|+...- .+...+-|..+.-.+.++.|+.+..-+.-. +-...+|+|||||.-
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l--------~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~---~~~~~l~vIDtpGfG 93 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSL--------VDETEIDDIRAEGTSPTLEIKITKAELEED---GFHLNLTVIDTPGFG 93 (373)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--------CCCCCCCCCCCCCCCCCEEEEEEEEEEECC---CEEEEEEEECCCCCC
T ss_conf 899962788755578876567652--------577775576666677625888643166048---748988886158865
Q ss_pred CCHHHHHHHHH------------------------HHC----EEEEEEE-CCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 52899999998------------------------604----5699995-588888347999999987399789998176
Q gi|254780264|r 92 DFTMEVERSIR------------------------VTD----GAIALLD-SNAGVEPQTETVWRQADKYSVPRVIFCNKM 142 (701)
Q Consensus 92 DF~~Ev~~aL~------------------------~~D----gailvVD-a~eGv~~qT~~vlr~~~~~~lp~ilvINKi 142 (701)
||.+...+-=. ..| +|+-.+- -..|+.+.--.+++. ....+-.|.||-|-
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~-ls~~vNlIPVI~Ka 172 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR-LSKRVNLIPVIAKA 172 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH-HHCCCCEEEEEECC
T ss_conf 65464101799999999999999998643455665446824899998468988787888999999-85336756566246
Q ss_pred CCCCC
Q ss_conf 76587
Q gi|254780264|r 143 DKMGA 147 (701)
Q Consensus 143 Dr~~~ 147 (701)
|-+-.
T Consensus 173 D~lT~ 177 (373)
T COG5019 173 DTLTD 177 (373)
T ss_pred CCCCH
T ss_conf 65899
No 285
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=97.69 E-value=0.00061 Score=44.05 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=84.5
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHC-CCCCCC--------CEECCCCEECCCHHHH---HHHCCCEEEEEEEEEECCCC
Q ss_conf 25279998687889778999999980-873214--------2201795613780889---87085376407999960777
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYA-GKSHKI--------GEVHDGSATMDWMEQE---QERGITITSASTTVFWPGRD 76 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~-g~i~~~--------g~v~~g~~~~D~~~~E---~eRgITi~ss~~sl~~~~~~ 76 (701)
+-.-|+|-|..++||+||+|+|..+- ..-++. ....+|.-.-|-.-.+ +..+.=|+|.+..=...+..
T Consensus 28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls 107 (267)
T pfam03308 28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS 107 (267)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 95599876899887999999999999968986899997899988886300107777650589985886457788888714
Q ss_pred -----------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -----------871389998179875528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 77 -----------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 77 -----------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.-+|-+-||.|-|--- +|+.. ..++|..+||.-..-|=+.|..+ +--.-+.=+++|||-|+.
T Consensus 108 ~~t~~~i~lleaaGfD~IivETVGVGQ--sE~~v-~~~aD~~llv~~Pg~GDeiQ~iK----aGImEiaDi~vVNKaD~~ 180 (267)
T pfam03308 108 RATREAILLLDAAGFDVIIIETVGVGQ--SEVDI-ANMADTFVLVTIPGGGDDLQGIK----AGLMEIADIYVVNKADLP 180 (267)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCC--CCHHH-HHHCCEEEEEECCCCCHHHHHHH----HHHHHHCCEEEEECCCHH
T ss_conf 769999999997799999992477775--30355-54157689995588760888987----537653548999667647
Q ss_pred CCCHHHHHHHHCCCC
Q ss_conf 875555666411110
Q gi|254780264|r 146 GADFYRSVEMISSRL 160 (701)
Q Consensus 146 ~~d~~~~l~~i~~~l 160 (701)
+++ ....+++..+
T Consensus 181 ~A~--~~~~~l~~~l 193 (267)
T pfam03308 181 GAE--RTARELRSAL 193 (267)
T ss_pred HHH--HHHHHHHHHH
T ss_conf 699--9999999998
No 286
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.66 E-value=0.0011 Score=42.38 Aligned_cols=145 Identities=20% Similarity=0.150 Sum_probs=83.4
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHC-CCCCCC--------CEECCCCEECCCHHH---HHHHCCCEEEEEEEEEECCCC
Q ss_conf 25279998687889778999999980-873214--------220179561378088---987085376407999960777
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYA-GKSHKI--------GEVHDGSATMDWMEQ---EQERGITITSASTTVFWPGRD 76 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~-g~i~~~--------g~v~~g~~~~D~~~~---E~eRgITi~ss~~sl~~~~~~ 76 (701)
+-.-|+|-|..++||+||+|+|..+- ..-++. ....+|.-.-|..-. -..-++=|+|.+..-...+..
T Consensus 48 ~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~ 127 (325)
T PRK09435 48 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 127 (325)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 82599742799986889999999999967985899997899998886101038888761479984884067788867733
Q ss_pred -----------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -----------871389998179875528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 77 -----------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 77 -----------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.-+|-+-||.|-|-- .+|+.. ..++|..++|+--.-|=..|..+ +--.-+.=+++|||-|+.
T Consensus 128 ~~~~~~~~~~~a~g~d~i~iETvGvG--Q~e~~v-~~~~d~~~~~~~p~~GD~~Q~~K----~GImEiaDi~vVNKaDgd 200 (325)
T PRK09435 128 RKTRETMLLCEAAGFDVILVETVGVG--QSETAV-AGMVDFFLLLQLPGAGDELQGIK----KGIMELADLIVINKADGD 200 (325)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHH-HHHCCEEEEEECCCCCCHHHHHH----HHHHHHCCEEEEECCCCC
T ss_conf 54999999999779998999706777--148899-87426688883588760889988----657750426899776755
Q ss_pred CCC-HHHHHHHHCCCC
Q ss_conf 875-555666411110
Q gi|254780264|r 146 GAD-FYRSVEMISSRL 160 (701)
Q Consensus 146 ~~d-~~~~l~~i~~~l 160 (701)
... .+.+..+++..+
T Consensus 201 ~~~~A~~t~~e~~~aL 216 (325)
T PRK09435 201 NHTAARRAAAEYRSAL 216 (325)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 6589999999999998
No 287
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.65 E-value=4.6e-05 Score=51.26 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=60.2
Q ss_pred EECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CCCCC
Q ss_conf 0103321165467100001101334568368983265541110453210474454200356732641--3874--44321
Q gi|254780264|r 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ETTTG 391 (701)
Q Consensus 316 ~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~~~g 391 (701)
++|-..+.-+..|.+..++|.||+++.||+++....+++.+|.++..+ ..++++|.||+-|++ .|++ ++..|
T Consensus 3 ~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~di~rG 78 (83)
T cd03696 3 LPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEC----CCEECEECCCCEEEEEEECCCHHHCCCC
T ss_conf 488689981895799999996798569999999787733899999989----9596889799879999758976735867
Q ss_pred CCCCC
Q ss_conf 10127
Q gi|254780264|r 392 DTLCD 396 (701)
Q Consensus 392 dTl~~ 396 (701)
+.||+
T Consensus 79 ~vl~s 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred CEEEC
T ss_conf 89919
No 288
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.63 E-value=4.5e-05 Score=51.31 Aligned_cols=78 Identities=28% Similarity=0.350 Sum_probs=57.7
Q ss_pred EECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEEC--CCCCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CCC
Q ss_conf 01033211654671000011013345683689832--65541110453210474454200356732641--3874--443
Q gi|254780264|r 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTV--KGKKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ETT 389 (701)
Q Consensus 316 ~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~~ 389 (701)
+.|-..+.-+..|.++.++|.+|+++.||++.... ...+.+|.++... ..++++|.|||-|++ .|++ ++.
T Consensus 3 m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~~~~~~~V~sIq~~----~~~v~~a~aG~rv~l~l~gi~~~~i~ 78 (87)
T cd03697 3 MPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKREDVE 78 (87)
T ss_pred EEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCCCCCEEEEEEEHHC----CCCCCCCCCCCEEEEEECCCCHHHCC
T ss_conf 36816996698689999995526084799999972899718999990871----94335379867999998588889837
Q ss_pred CCCCCCCC
Q ss_conf 21101277
Q gi|254780264|r 390 TGDTLCDP 397 (701)
Q Consensus 390 ~gdTl~~~ 397 (701)
.|+.||.|
T Consensus 79 rG~vl~~p 86 (87)
T cd03697 79 RGMVLAKP 86 (87)
T ss_pred CCCEEECC
T ss_conf 70399479
No 289
>KOG2486 consensus
Probab=97.63 E-value=0.00081 Score=43.25 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=78.0
Q ss_pred CCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf 65671025279998687889778999999980873214220179561378088987085376407999960777871389
Q gi|254780264|r 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKL 82 (701)
Q Consensus 3 ~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~i 82 (701)
.+|+-.+.=-++++|--.-||++|++.++.. ..+...++-.-| ++..+..+.- +-.+
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~-k~~~~t~k~K~g-----------------~Tq~in~f~v-----~~~~ 185 (320)
T KOG2486 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRV-KNIADTSKSKNG-----------------KTQAINHFHV-----GKSW 185 (320)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHHHHCCCCCC-----------------CCEEEEEEEC-----CCEE
T ss_conf 2477788852666247762278887654321-455640378876-----------------5113200120-----5548
Q ss_pred EEEECCC-----C-----CCCHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9981798-----7-----55289999999---86045699995588888347999999987399789998176765
Q gi|254780264|r 83 TIIDTPG-----H-----VDFTMEVERSI---RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 83 NlIDTPG-----H-----~DF~~Ev~~aL---~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.++|-|| + .||..=+..-+ +-.=-+.++|||.-++++.--..+..|-+.++|+.+++||||+-
T Consensus 186 ~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486 186 YEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 9984688654567855741476757888872653311566630367889987699988752499738863024455
No 290
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.56 E-value=0.00052 Score=44.45 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 28999999986045699995588888347999999987399789998176765
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|--++..++.-+|-.+.|+||..++.+.-..+.+.+.+.+-|+++++||+|..
T Consensus 2 ~rr~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~ 54 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 78999999987999999998788999869899999975699399997755558
No 291
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.54 E-value=0.00043 Score=45.04 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=44.9
Q ss_pred CCCC-CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9875-528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 88 PGHV-DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 88 PGH~-DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|||+ -..-++..++..+|-.+.|+||..++...-..+.+.+ .+-|+++++||+|..
T Consensus 3 pghm~k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~--~~K~~ilV~NK~DL~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCC
T ss_conf 548999999999999869999999989888876528999997--689889998555558
No 292
>PRK11568 hypothetical protein; Provisional
Probab=97.53 E-value=0.0073 Score=37.12 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 22550331289999511168767603379999999999998489889801789999838577457999997277079745
Q gi|254780264|r 559 LAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQ 638 (701)
Q Consensus 559 L~~epi~gv~v~l~d~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~ 638 (701)
|-+..+.+|.++++.. +-...--.|...-|=..+..+|+..+...-..|...+.|.++.+.+|.+...|.+..+.|.+.
T Consensus 87 L~~~~l~nv~vVVtRY-FGGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 87 LMGSGVGEITAVVVRY-YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLAGIEALLGQFDGKIINS 165 (204)
T ss_pred HHHCCCCCEEEEEEEE-ECCEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9638997699999997-566770652678999999999998488089998689999986778899999999869989706
Q ss_pred ECCCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEE
Q ss_conf 358983999999604373384788786308637989
Q gi|254780264|r 639 ENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYT 674 (701)
Q Consensus 639 ~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~ 674 (701)
+.... +.++..+|..+.-.|...|..+|+|+....
T Consensus 166 ~y~~~-V~~~~~v~~~~~~~~~~~l~~~t~G~v~i~ 200 (204)
T PRK11568 166 DYQAF-VTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred EECCE-EEEEEEECHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 71470-899999878999999999999679907999
No 293
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.52 E-value=0.00043 Score=44.98 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=68.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHH--CC---CEEEE-----EEEEEECCC----
Q ss_conf 52799986878897789999999808732142201795613780889870--85---37640-----799996077----
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQER--GI---TITSA-----STTVFWPGR---- 75 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eR--gI---Ti~ss-----~~sl~~~~~---- 75 (701)
++-|.+.|.+++|||||+++++..=..-.+. .|-.+.-|+..+.+...| |+ -+.+. ..|+.....
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~-aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~ 91 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKI-AVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELV 91 (202)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCE-EEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 4899961799867899999999999752776-899640400655999973779806874038765886788999999986
Q ss_pred -CCCCEEEEEEECCCCCCCHHHHHHHHHHHC-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -787138999817987552899999998604-5699995588888347999999987399789998176765
Q gi|254780264|r 76 -DGGQKKLTIIDTPGHVDFTMEVERSIRVTD-GAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 76 -~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~D-gailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
.+.+.-+=||.+=| +.+. ..+--+.| ..|+|||+.||--.--+ .- .... ..=+++|||.|-.
T Consensus 92 ~~~~~~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P~K-~g-P~i~--~aDllVInK~DLa 155 (202)
T COG0378 92 LDFPDLDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIPRK-GG-PGIF--KADLLVINKTDLA 155 (202)
T ss_pred HCCCCCCEEEEECCC--CEEC--CCCCCHHHCEEEEEEECCCCCCCCCC-CC-CCEE--EEEEEEEEHHHHH
T ss_conf 317767789992376--4324--46804130469999987888887655-79-9646--7418998567738
No 294
>KOG1547 consensus
Probab=97.44 E-value=0.00026 Score=46.38 Aligned_cols=73 Identities=25% Similarity=0.273 Sum_probs=46.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
||-++|..+.|||||+..|.. ++..++ + ..|+.++-.-.-+-|++..-.+.-.+ -..++|+|||||.-
T Consensus 48 NIMVVgqSglgkstlinTlf~-s~v~~~-s-------~~~~~~~p~pkT~eik~~thvieE~g---VklkltviDTPGfG 115 (336)
T KOG1547 48 NIMVVGQSGLGKSTLINTLFK-SHVSDS-S-------SSDNSAEPIPKTTEIKSITHVIEEKG---VKLKLTVIDTPGFG 115 (336)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HHHHHC-C-------CCCCCCCCCCCEEEEEEEEEEEEECC---EEEEEEEECCCCCC
T ss_conf 799980687771156788888-887612-5-------89765675564278875344533066---58998883489853
Q ss_pred CCHHH
Q ss_conf 52899
Q gi|254780264|r 92 DFTME 96 (701)
Q Consensus 92 DF~~E 96 (701)
||...
T Consensus 116 DqInN 120 (336)
T KOG1547 116 DQINN 120 (336)
T ss_pred CCCCC
T ss_conf 33375
No 295
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.38 E-value=0.003 Score=39.57 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=73.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCC----CC-CCCE-ECCCCEECCCHHHHH---HHCCCEEEEEEEEEECCC---
Q ss_conf 27999868788977899999998---087----32-1422-017956137808898---708537640799996077---
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYY---AGK----SH-KIGE-VHDGSATMDWMEQEQ---ERGITITSASTTVFWPGR--- 75 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~---~g~----i~-~~g~-v~~g~~~~D~~~~E~---eRgITi~ss~~sl~~~~~--- 75 (701)
--|+|-|-.++||+||+|.|... -|- +. -+.+ ..+|.-.-|-.-..+ .-|+=|+|++.+=...+.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~a 131 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRA 131 (323)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 37873179988668899999999997796789999889999878530120766776446998178426877651016688
Q ss_pred --------CCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf --------787138999817987552899999998604569999558888834799999998739978999817676587
Q gi|254780264|r 76 --------DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 76 --------~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
+.-.|=+-+|.|-|-- .+||.-+ ..+|..++|.=.--|=..|..+. --.-+-=|+||||.||.++
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvG--Qsev~I~-~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVG--QSEVDIA-NMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRKGA 204 (323)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCC--CCHHHHH-HHCCEEEEEECCCCCCHHHHHHH----HHHHHHHEEEEECCCHHHH
T ss_conf 999999998618988999814788--4155776-52166899965788827888874----1465403356725672658
Q ss_pred C
Q ss_conf 5
Q gi|254780264|r 148 D 148 (701)
Q Consensus 148 d 148 (701)
+
T Consensus 205 ~ 205 (323)
T COG1703 205 E 205 (323)
T ss_pred H
T ss_conf 9
No 296
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.37 E-value=0.00014 Score=48.11 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHH---HHCCCCCCCCEECCCCEECCCHHHHHHHCCC-----EEEE-EEEE---EECCCCCCCEEEEEEE
Q ss_conf 7889778999999---9808732142201795613780889870853-----7640-7999---9607778713899981
Q gi|254780264|r 19 IDAGKTTTTERIL---YYAGKSHKIGEVHDGSATMDWMEQEQERGIT-----ITSA-STTV---FWPGRDGGQKKLTIID 86 (701)
Q Consensus 19 vd~GKTTL~d~LL---~~~g~i~~~g~v~~g~~~~D~~~~E~eRgIT-----i~ss-~~sl---~~~~~~~~~~~iNlID 86 (701)
-++||||++=.|- +..|.-=..-+.|-....++|.+.-.++|.- +-.. ..+. .++.....+|-+-+||
T Consensus 11 GG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VIID 90 (231)
T pfam07015 11 GGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALAD 90 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98659999999999999689959999689986889999987646888876522205660158999998865799989983
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEE-----ECCCCCCHHHHHHHHH---HHHCCCCEEEEECCCCC
Q ss_conf 7987552899999998604569999-----5588888347999999---98739978999817676
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALL-----DSNAGVEPQTETVWRQ---ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvV-----Da~eGv~~qT~~vlr~---~~~~~lp~ilvINKiDr 144 (701)
|||+.. ..+..++.++|-+|+=+ |+.++ .+|-..+++ +.+.++|.-++++++--
T Consensus 91 tpg~~s--~~~~~AI~~ADlVLIP~qpSplD~~~a--~~t~~~i~~~~~~~~~~ip~avl~tRv~~ 152 (231)
T pfam07015 91 THGGSS--ELNNTIIASSDLLLIPTMLTPLDIDEA--LATYRYVIELLLTENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCCC--HHHHHHHHHCCEEEECCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 998575--899999997898997789982339999--99999999999973789980334551140
No 297
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.37 E-value=0.0032 Score=39.40 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=65.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEC---CCCEE-CCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 799986878897789999999808732142201---79561-37808898708537640799996077787138999817
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH---DGSAT-MDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~---~g~~~-~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
-+.+||.-..|||+|+=+... +....-+... ..+.+ .|. .++........+.-.+++...++|-||
T Consensus 4 KiVlvGDs~VGKTsLl~~~~~--n~~~~~~~~~~~~~pTv~~~~~--------~~~~~~~~~~~~~~vdg~~v~L~iWDT 73 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARAC--NKTLTQYQLLATHVPTVWAIDQ--------YRVCQEVLERSRDVVDGVSVSLRLWDT 73 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCC--------CEEEEEECCCCEEEECCEEEEEEEEEC
T ss_conf 999987899898999977874--7876556566675886633333--------134444302211421895999999978
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 9875528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
.|.-++.- ..+-+-+|+++||.|...--.-+. ...|..-. ..++|+|||=||+|.
T Consensus 74 AG~~~~~r--~~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DL 132 (195)
T cd01873 74 FGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred CCCHHHCC--CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 99620012--143568889999996698014899999999999986899988999637575
No 298
>KOG0084 consensus
Probab=97.37 E-value=0.0065 Score=37.44 Aligned_cols=118 Identities=22% Similarity=0.203 Sum_probs=86.4
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
+.+=-|-+||.-+-|||.|+-++- .|+..++...-|-+.-..-++++.+ +.-++++=||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~------------------~~~f~e~~~sTIGVDf~~rt~e~~g---k~iKlQIWDT 65 (205)
T KOG0084 7 DYLFKIILIGDSGVGKTCLLLRFK------------------DDTFTESYISTIGVDFKIRTVELDG---KTIKLQIWDT 65 (205)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHC------------------CCCCCHHHCCEEEEEEEEEEEEECC---EEEEEEEEEC
T ss_conf 268999998778967635556662------------------6985333232312678898755526---4888876663
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEECCCCCCC
Q ss_conf 98755289999999860456999955888883479999----999873997899981767658
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW----RQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl----r~~~~~~lp~ilvINKiDr~~ 146 (701)
-|---|-..+.+--|-+.|+|+|-|...--.-+-..-| +.-..+++|++||=||-|...
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
T ss_conf 653777555476616787599999765577765488999986652467787688862455186
No 299
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.36 E-value=0.0049 Score=38.21 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=63.8
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE--EEEEEEECCCCCCCEEEEEEE
Q ss_conf 252799986878897789999999808732142201795613780889870853764--079999607778713899981
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS--ASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s--s~~sl~~~~~~~~~~~iNlID 86 (701)
-|-.|+++|-..+||+||+-.+- .+-.|++.-. ++ |+.- .+++. ..+..|-+-|
T Consensus 158 llADVGLVG~PNaGKSTlls~vS---~AkPKIadYp----FT-----------TL~PnLGvV~~------~~~~sfv~AD 213 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVS---AAKPKIADYP----FT-----------TLVPNLGVVRV------DGGESFVVAD 213 (369)
T ss_pred EECCCCCCCCCCCCHHHHHHHHH---HCCCCCCCCC----CC-----------CCCCCCCEEEE------CCCCEEEEEC
T ss_conf 00011412589885798998886---0688544886----53-----------02475307996------4886079934
Q ss_pred CCCCC-----------CCHHHHHHHHHHHCEEEEEEECCCC--C--CHHHHHHHHHHHHC-----CCCEEEEECCCCCCC
Q ss_conf 79875-----------5289999999860456999955888--8--83479999999873-----997899981767658
Q gi|254780264|r 87 TPGHV-----------DFTMEVERSIRVTDGAIALLDSNAG--V--EPQTETVWRQADKY-----SVPRVIFCNKMDKMG 146 (701)
Q Consensus 87 TPGH~-----------DF~~Ev~~aL~~~DgailvVDa~eG--v--~~qT~~vlr~~~~~-----~lp~ilvINKiDr~~ 146 (701)
-||-+ +|.--++|+ -.-+-|||+..- . .-.-+.++..+.+. +-|.++++||||.+.
T Consensus 214 IPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 214 IPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH----HEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCC
T ss_conf 7532356446887638888788865----154799856765677989999999999998577753585699985557766
No 300
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.36 E-value=0.00058 Score=44.16 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHH---HHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE------EEE---ECCCCCCCEEEEEEE
Q ss_conf 7889778999999---9808732142201795613780889870853764079------999---607778713899981
Q gi|254780264|r 19 IDAGKTTTTERIL---YYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST------TVF---WPGRDGGQKKLTIID 86 (701)
Q Consensus 19 vd~GKTTL~d~LL---~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~------sl~---~~~~~~~~~~iNlID 86 (701)
-++||||++=.|- +..|.--..-+.|-....+.|.+.-++.|..-....+ +.. ++.....+|-+-+||
T Consensus 11 GG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~~D~VIID 90 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALAD 90 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98769999999999999789959999689986889999876525898877523405652578999988753699889981
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEE-----CCCCCCHHHHHHHHH---HHHCCCCEEEEECCCCC
Q ss_conf 79875528999999986045699995-----588888347999999---98739978999817676
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLD-----SNAGVEPQTETVWRQ---ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVD-----a~eGv~~qT~~vlr~---~~~~~lp~ilvINKiDr 144 (701)
|||+.+ ..+..++.++|-+|+=+- +.+. .+|-.++++ ..+..+|.-+++|++--
T Consensus 91 tpg~~s--~~~~~Ai~~ADLVLIP~qPSp~D~~~a--~~tv~~i~~~~~~~~~~ip~~vlltRv~a 152 (231)
T PRK13849 91 THGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEA--LSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCCC--HHHHHHHHHCCEEEECCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 899775--899999997898997799986679999--99999999999972878865666540504
No 301
>KOG0073 consensus
Probab=97.35 E-value=0.0042 Score=38.64 Aligned_cols=110 Identities=22% Similarity=0.212 Sum_probs=74.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|-|+|--.+||||+..+|+-.. ..+.+ -|+...--++.++ .|.+|+-|--|-.
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~-----------~~~i~----------pt~gf~Iktl~~~-----~~~L~iwDvGGq~ 71 (185)
T KOG0073 18 RILILGLDNSGKTTIVKKLLGED-----------TDTIS----------PTLGFQIKTLEYK-----GYTLNIWDVGGQK 71 (185)
T ss_pred EEEEEECCCCCCHHHHHHHCCCC-----------CCCCC----------CCCCEEEEEEEEC-----CEEEEEEECCCCC
T ss_conf 79999127898244898853898-----------22328----------7211355787742-----4289999748853
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEECCCCCCCC
Q ss_conf 52899999998604569999558888-834799999998----739978999817676587
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQAD----KYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~----~~~lp~ilvINKiDr~~~ 147 (701)
-+..-=..=---+||-|-|||...-- +.+|...++.+. ..+-|++++.||.|-.++
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 3687887766504728999977208889999999999975654348843999734768552
No 302
>KOG1707 consensus
Probab=97.31 E-value=0.0023 Score=40.29 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=81.3
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999607778713
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
|+-+-...++| |.++|.-+.|||||+=+|+...-.-.-+ +.+| -|||-+.+.+ ..-
T Consensus 1 ~~~~~t~kdVR-IvliGD~G~GKtSLImSL~~eef~~~VP-------~rl~--------~i~IPadvtP--------e~v 56 (625)
T KOG1707 1 MSDDETLKDVR-IVLIGDEGVGKTSLIMSLLEEEFVDAVP-------RRLP--------RILIPADVTP--------ENV 56 (625)
T ss_pred CCCCCCCCCEE-EEEECCCCCCHHHHHHHHHHHHCCCCCC-------CCCC--------CCCCCCCCCC--------CCC
T ss_conf 98756755259-9997788866899999987633545345-------5577--------6115875676--------767
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEEC-----CCCCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCC
Q ss_conf 899981798755289999999860456999955-----8888834799999998--739978999817676587
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDS-----NAGVEPQTETVWRQAD--KYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa-----~eGv~~qT~~vlr~~~--~~~lp~ilvINKiDr~~~ 147 (701)
-..++||+--.|=-..+...++-+|...+|-++ ++|++..=.-++||.. -.++|+||+=||.|--..
T Consensus 57 pt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707 57 PTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 21887436664256889999864588999985387687654443223656441577766877998303577554
No 303
>KOG1954 consensus
Probab=97.30 E-value=0.0034 Score=39.22 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=83.4
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC--------------E---ECCCCE-ECC----CHH--------HHHH
Q ss_conf 252799986878897789999999808732142--------------2---017956-137----808--------8987
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIG--------------E---VHDGSA-TMD----WME--------QEQE 58 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g--------------~---v~~g~~-~~D----~~~--------~E~e 58 (701)
+---|-++|.-..||||++..||-..=--.+.| . +-.|++ .-| |+. ++|=
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 68448997246666039999987177875546899975306899855865666786256468775165666679999988
Q ss_pred HCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-----------CCCHHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHH
Q ss_conf 08537640799996077787138999817987-----------5528999999986045699995588-88834799999
Q gi|254780264|r 59 RGITITSASTTVFWPGRDGGQKKLTIIDTPGH-----------VDFTMEVERSIRVTDGAIALLDSNA-GVEPQTETVWR 126 (701)
Q Consensus 59 RgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH-----------~DF~~Ev~~aL~~~DgailvVDa~e-Gv~~qT~~vlr 126 (701)
++-.|.+.. -..||+|||||- -||.+-.+==..-||--+|+.|+.. -|...++.++.
T Consensus 137 ~csqmp~~v-----------Le~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~ 205 (532)
T KOG1954 137 MCSQLPNQV-----------LESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVID 205 (532)
T ss_pred HHHCCCHHH-----------HHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHH
T ss_conf 773387565-----------500444236753201222012367808899999974568999724664566678999999
Q ss_pred HHHHCCCCEEEEECCCCCCCC
Q ss_conf 998739978999817676587
Q gi|254780264|r 127 QADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 127 ~~~~~~lp~ilvINKiDr~~~ 147 (701)
++..+.=++=+|+||-|....
T Consensus 206 aLkG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954 206 ALKGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHCCCCEEEEEECCCCCCCH
T ss_conf 861886406888303244379
No 304
>KOG0098 consensus
Probab=97.30 E-value=0.004 Score=38.80 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=76.3
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECC----CC
Q ss_conf 98656710252799986878897789999999808732142201795613780889870853764079999607----77
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG----RD 76 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~----~~ 76 (701)
|+..|.. -+-|+|.-+-||+.|.-++- .. +- +++..+.+-+.|.. .+
T Consensus 1 m~~~~~f----KyIiiGd~gVGKSclllrf~---~k--rF--------------------~~~hd~TiGvefg~r~~~id 51 (216)
T KOG0098 1 MSYAYLF----KYIIIGDTGVGKSCLLLRFT---DK--RF--------------------QPVHDLTIGVEFGARMVTID 51 (216)
T ss_pred CCCCCEE----EEEEECCCCCCHHHHHHHHH---CC--CC--------------------CCCCCCEEEEEECEEEEEEC
T ss_conf 9865447----89998777732889999985---15--76--------------------54534302244023698885
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 8713899981798755289999999860456999955888883479----999999873997899981767658
Q gi|254780264|r 77 GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE----TVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 77 ~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~----~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
++.-++|+-||-||..|.+=+.+--|-+-|||||-|..---.-.-. .=+||...+++.++|.=||.|-..
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHC
T ss_conf 81689999755786769998888844676238999713066677899999999972678838999744144210
No 305
>PTZ00099 rab6; Provisional
Probab=97.29 E-value=0.0016 Score=41.36 Aligned_cols=69 Identities=26% Similarity=0.318 Sum_probs=53.3
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH---HHCCCCEEEEECCCCC
Q ss_conf 787138999817987552899999998604569999558888834799999-99---8739978999817676
Q gi|254780264|r 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 76 ~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~---~~~~lp~ilvINKiDr 144 (701)
+++...++|-||+|+-.|..=+..-.|-+||+|||-|...--.-+.-.-|. .+ ....+|++||=||.|.
T Consensus 25 ~~~~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL 97 (176)
T PTZ00099 25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
T ss_conf 9999999999799863413576887079867999850420778999999999999853887743999855655
No 306
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=97.27 E-value=0.0014 Score=41.72 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=57.5
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCC-HHHHHHHH
Q ss_conf 1389998179875528999999986045699995588888347999999987399789-998176765875-55566641
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRV-IFCNKMDKMGAD-FYRSVEMI 156 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~i-lvINKiDr~~~d-~~~~l~~i 156 (701)
.|=+-+||||+..+ ..+..++.++|.+|+|+..-.--..-++++++.+.+.+++++ +++||.|+-..+ ++..++.+
T Consensus 112 ~~D~viiD~pp~~~--~~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~ 189 (212)
T pfam01656 112 AYDYVIIDGAPGLG--ELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDERHLDKEIEAL 189 (212)
T ss_pred CCCEEEEECCCCCC--HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 49989994799755--9999999839989999489769999999999999985996229999148899836630789999
Q ss_pred CCCCCCC
Q ss_conf 1110268
Q gi|254780264|r 157 SSRLGAN 163 (701)
Q Consensus 157 ~~~l~~~ 163 (701)
....+..
T Consensus 190 ~~~~~~~ 196 (212)
T pfam01656 190 ERKTGIP 196 (212)
T ss_pred HHHHCCC
T ss_conf 9997899
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.24 E-value=0.0019 Score=40.83 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=30.8
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHH-HHCC
Q ss_conf 2527999868788977899999998087321422017956137808898-7085
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ-ERGI 61 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~-eRgI 61 (701)
+|.-+-+++..++|||||+++.|..-+.-.+. .|-.|.-.++.+.+-. +.|+
T Consensus 103 gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~-aVIeGD~~T~~DA~RI~~~Gv 155 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC-AVIEGDQQTVNDAARIRATGT 155 (290)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHCCC
T ss_conf 91899930699878899999999987336757-999604235667999997699
No 308
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.17 E-value=0.002 Score=40.71 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=56.3
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf 13899981798755289999999860456999955888883479999999873997899981767658755556664111
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISS 158 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~ 158 (701)
+|-+-+||||-.. ...+..++.++|.+|+|+.-..---.-++++++.+.+.++|.-+++||.|-. .+....++++.+
T Consensus 92 ~~D~viiD~Ppg~--~~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~Nr~~~~-~~~~~~i~~~~~ 168 (179)
T cd03110 92 GAELIIIDGPPGI--GCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN-DEIAEEIEDYCE 168 (179)
T ss_pred CCCEEEEECCCCC--CHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHH
T ss_conf 7998998189997--5789999973994999819947899999999999998299789999688788-763489999999
Q ss_pred CCCC
Q ss_conf 1026
Q gi|254780264|r 159 RLGA 162 (701)
Q Consensus 159 ~l~~ 162 (701)
+++.
T Consensus 169 ~~~v 172 (179)
T cd03110 169 EEGI 172 (179)
T ss_pred HHCC
T ss_conf 8099
No 309
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.15 E-value=0.0099 Score=36.26 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH---HHHHHCCCEEEEEEEEE---ECC----------
Q ss_conf 27999868788977899999998087321422017956137808---89870853764079999---607----------
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME---QEQERGITITSASTTVF---WPG---------- 74 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~---~E~eRgITi~ss~~sl~---~~~---------- 74 (701)
+=|+++|.-+.||||.+-+|-++.. +.|. .=+--.+|+.- .||-+...=.. .++++ ...
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~---~~~~-~V~lit~Dt~R~gA~eQL~~ya~~l-~v~~~~~~~~~d~~~~~~~~l 76 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLK---KQGK-KVLLVAADTFRAAAIEQLKQLAERL-GVPVFGSGTGSDPAAVAFDAV 76 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HCCC-EEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHH
T ss_conf 6999989999988999999999999---7799-2899975877688999999999863-981781487778789999999
Q ss_pred --CCCCCEEEEEEECCCCCCCHHH----HHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf --7787138999817987552899----999998--604569999558888834799999998739978999817676
Q gi|254780264|r 75 --RDGGQKKLTIIDTPGHVDFTME----VERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 75 --~~~~~~~iNlIDTPGH~DF~~E----v~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr 144 (701)
....++-+-||||||...+-.+ +..-+. ..+-.+||+||.-|-.. .+.+++.....++ -=++++|+|.
T Consensus 77 ~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~f~~~~~~-~~~I~TKlDe 152 (196)
T pfam00448 77 EKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNA-LNQAKAFNEAVGI-TGVILTKLDG 152 (196)
T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH-HHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 99884689999998999874767789999999852287302899856778213-7899987600477-6268884057
No 310
>KOG2655 consensus
Probab=97.14 E-value=0.00076 Score=43.42 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=47.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
|+=++|..+.|||||+-.|.... +. +++..+..+.+..+...|.+..+-+.-. +-...+|+|||||.-
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~--------l~-~~~~~~~~~~~~~~t~~i~~~~~~iee~---g~~l~LtvidtPGfG 90 (366)
T KOG2655 23 TLMVVGESGLGKSTFINSLFLTD--------LS-GNREVPGASERIKETVEIESTKVEIEEN---GVKLNLTVIDTPGFG 90 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------CC-CCCCCCCCCCCCCCCCEEEEEEEEECCC---CEEEEEEEECCCCCC
T ss_conf 89985588763889998888653--------25-7766677556765531132232376379---748876784369986
Q ss_pred CCHHHHH
Q ss_conf 5289999
Q gi|254780264|r 92 DFTMEVE 98 (701)
Q Consensus 92 DF~~Ev~ 98 (701)
|+.+.-.
T Consensus 91 D~vdns~ 97 (366)
T KOG2655 91 DAVDNSN 97 (366)
T ss_pred CCCCCCC
T ss_conf 5446512
No 311
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.07 E-value=0.0023 Score=40.37 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=71.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCCCCC--------EECCCCEECCCHHHH---HHHCCCEEEEEEEEEECCC-----
Q ss_conf 9998687889778999999980-8732142--------201795613780889---8708537640799996077-----
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYA-GKSHKIG--------EVHDGSATMDWMEQE---QERGITITSASTTVFWPGR----- 75 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~-g~i~~~g--------~v~~g~~~~D~~~~E---~eRgITi~ss~~sl~~~~~----- 75 (701)
|+|-|.+++|||||+|+|+.+- ..-.+.+ ...+|.-.-|.--.+ ..-++=|+|.+..-...+.
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred ------CCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf ------78713899981798755289999999860456999955888883479999999873997899981767
Q gi|254780264|r 76 ------DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMD 143 (701)
Q Consensus 76 ------~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiD 143 (701)
+..++-+-||.|-|- =.+|+..+ .++|..++|++...|=..|.++ +--..+.=+++|||.|
T Consensus 82 ~~i~~l~~~g~D~IiIETvGv--GQse~~i~-~~aD~~i~v~~p~~GD~iQ~~K----~gi~e~aDl~vvNK~D 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGV--GQSEVDIA-SMADTTVVVMAPGAGDDIQAIK----AGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHHHCCCCEEEEECCCC--CCCHHHHH-HHCCEEEEEECCCCCCHHHHCC----CCHHHCCCEEEEECCC
T ss_conf 999999975999899974877--75602655-4356699996368873776112----2852124699993789
No 312
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.06 E-value=0.0016 Score=41.42 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCC
Q ss_conf 456999955888883479999999873-99789998176765
Q gi|254780264|r 105 DGAIALLDSNAGVEPQTETVWRQADKY-SVPRVIFCNKMDKM 145 (701)
Q Consensus 105 DgailvVDa~eGv~~qT~~vlr~~~~~-~lp~ilvINKiDr~ 145 (701)
|-.+.|+||..|+.+.-..+.+...+. +-|.|+++||+|..
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 989999968799998899999999865899489997673458
No 313
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.98 E-value=0.0063 Score=37.51 Aligned_cols=106 Identities=20% Similarity=0.359 Sum_probs=60.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC----CCCE--E--CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 99986878897789999999808732----1422--0--17956137808898708537640799996077787138999
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSH----KIGE--V--HDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTI 84 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~----~~g~--v--~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNl 84 (701)
.-|||.-++||||++- ++|..- +.|. + -+|++.+|+ |-. + .=-|
T Consensus 114 YlviG~~gsGKTt~l~----~Sgl~fPl~~~~~~~~~~g~ggt~~cdw-------------------wft----~-~AVl 165 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQ----NSGLKFPLAERLGAAALRGVGGTRNCDW-------------------WFT----D-EAVL 165 (1169)
T ss_pred EEEECCCCCCHHHHHH----HCCCCCCCCCCCCHHHCCCCCCCCCCCE-------------------EEE----C-CEEE
T ss_conf 8997899986689998----3799887741001122158899855571-------------------652----7-8799
Q ss_pred EECCCCC---CCHHHHHHH--------------HHHHCEEEEEEECCCCCCH-HH--H---HH-------HHHHHHCCCC
Q ss_conf 8179875---528999999--------------9860456999955888883-47--9---99-------9999873997
Q gi|254780264|r 85 IDTPGHV---DFTMEVERS--------------IRVTDGAIALLDSNAGVEP-QT--E---TV-------WRQADKYSVP 134 (701)
Q Consensus 85 IDTPGH~---DF~~Ev~~a--------------L~~~DgailvVDa~eGv~~-qT--~---~v-------lr~~~~~~lp 134 (701)
|||-|.- |=-+|..++ =+-..|+||+||+.+=+.. .+ . .. +++...-++|
T Consensus 166 iDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~P 245 (1169)
T TIGR03348 166 IDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP 245 (1169)
T ss_pred EECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 94797602688864001899999999998648989987689997899974789999999999999999999998299877
Q ss_pred EEEEECCCCCCC
Q ss_conf 899981767658
Q gi|254780264|r 135 RVIFCNKMDKMG 146 (701)
Q Consensus 135 ~ilvINKiDr~~ 146 (701)
+-++++|+|.+.
T Consensus 246 VYv~~TK~Dll~ 257 (1169)
T TIGR03348 246 VYLVLTKADLLA 257 (1169)
T ss_pred EEEEEECHHHHH
T ss_conf 599866401230
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.98 E-value=0.0091 Score=36.49 Aligned_cols=123 Identities=24% Similarity=0.280 Sum_probs=66.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH---HHHHHCCCEEEEEEEEEE-CCC-------------
Q ss_conf 999868788977899999998087321422017956137808---898708537640799996-077-------------
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME---QEQERGITITSASTTVFW-PGR------------- 75 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~---~E~eRgITi~ss~~sl~~-~~~------------- 75 (701)
|.++|.-+.||||.+-.|-++.- +.|. .=+--.+|+.- .||-|-..=... +.+.- .+.
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~---~~~~-kV~lit~Dt~R~gA~eQL~~~a~~l~-v~~~~~~~~~~~~~~~~~~~~~ 77 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK---KKGK-KVLLVAADTYRPAAIEQLRVLGEQVG-VPVFEEGEGKDPVSIAKRAIEH 77 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HCCC-EEEEEECCCCCHHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999988999999999999---7699-28999748875779999999999749-8599227755879999999999
Q ss_pred -CCCCEEEEEEECCC--CCCCH--HHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCE-EEEECCCCCC
Q ss_conf -78713899981798--75528--999999986--0456999955888883479999999873--9978-9998176765
Q gi|254780264|r 76 -DGGQKKLTIIDTPG--HVDFT--MEVERSIRV--TDGAIALLDSNAGVEPQTETVWRQADKY--SVPR-VIFCNKMDKM 145 (701)
Q Consensus 76 -~~~~~~iNlIDTPG--H~DF~--~Ev~~aL~~--~DgailvVDa~eGv~~qT~~vlr~~~~~--~lp~-ilvINKiDr~ 145 (701)
..+++-+-|||||| |.|.. .|...-+.+ .|-.++|+||..| +...+++... .++. =++++|+|.-
T Consensus 78 ~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~-----~~~~~~~~~f~~~~~~~~~I~TKlDet 152 (173)
T cd03115 78 AREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG-----QDAVNQAKAFNEALGITGVILTKLDGD 152 (173)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH-----HHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 875689989997888787999999999999864489721574246550-----658999999874279978999714389
No 315
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.96 E-value=0.0028 Score=39.81 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCC
Q ss_conf 8999999986045699995588888347999999987--399789998176765
Q gi|254780264|r 94 TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK--YSVPRVIFCNKMDKM 145 (701)
Q Consensus 94 ~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~--~~lp~ilvINKiDr~ 145 (701)
.-|+..++..+|-.+.|+||-.++.+.-..+-+.+.+ .+-|+++++||+|-.
T Consensus 2 ~rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~ 55 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 189999997699999999898888768999999999843899579998650049
No 316
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.96 E-value=0.0063 Score=37.51 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=58.6
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCC-CC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 1389998179875528999999986045699995588-88--83479999999873997899981767658755556664
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNA-GV--EPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEM 155 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~e-Gv--~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~ 155 (701)
.|-+-+||||.-. +.-+..+|.++|..++++.+-. .+ ..+....+++.......+-+++|+.|.-..-.++..+.
T Consensus 114 ~~D~viiD~pp~l--~~~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~ 191 (246)
T TIGR03371 114 ARDWVLIDLPRGP--SPITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAV 191 (246)
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 7988999489987--49999999988947998189989999999999999984277675178863026401589999999
Q ss_pred HCCCCCCCCCEECCC
Q ss_conf 111102683300023
Q gi|254780264|r 156 ISSRLGANPLVIQLP 170 (701)
Q Consensus 156 i~~~l~~~~~~~~~p 170 (701)
+...++...++..+|
T Consensus 192 l~~~~~~~~~~~~I~ 206 (246)
T TIGR03371 192 LRATLGSRLLPMFVH 206 (246)
T ss_pred HHHHCCCCEEEEECC
T ss_conf 999749881622689
No 317
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.96 E-value=0.0023 Score=40.29 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 78897789999999808732142201795613780889870853764079999607778713899981798755289999
Q gi|254780264|r 19 IDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVE 98 (701)
Q Consensus 19 vd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ 98 (701)
=+.||||++-.|-+... +.|. .....|.+++ |-+-+||||++.+ .++.
T Consensus 9 GGvGKtt~~~~la~~~a---~~g~---~vl~iD~DpQ------------------------yD~iiIDtpp~~~--~~~~ 56 (104)
T cd02042 9 GGVGKTTTAVNLAAALA---RRGK---RVLLIDLDPQ------------------------YDYIIIDTPPSLG--LLTR 56 (104)
T ss_pred CCCCHHHHHHHHHHHHH---HCCC---EEEEEECCCC------------------------CCEEEEECCCCCC--HHHH
T ss_conf 98768999999999999---7799---2999977988------------------------8889997949998--9999
Q ss_pred HHHHHHCEEEEEEECC
Q ss_conf 9998604569999558
Q gi|254780264|r 99 RSIRVTDGAIALLDSN 114 (701)
Q Consensus 99 ~aL~~~DgailvVDa~ 114 (701)
.++.++|..|+.+...
T Consensus 57 ~al~~aD~viiP~~p~ 72 (104)
T cd02042 57 NALAAADLVLIPVQPS 72 (104)
T ss_pred HHHHHCCEEEEECCCC
T ss_conf 9999789999983698
No 318
>KOG0080 consensus
Probab=96.95 E-value=0.0023 Score=40.38 Aligned_cols=114 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHH--CCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 52799986878897789999999808732142201795613780889870--8537640799996077787138999817
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQER--GITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eR--gITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
.=-|-+||..+-||++|.=++...+ -++++.- |+-.|...++. +++.+++.+-||
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~------------------fd~~~~~tIGvDFkvk~m~v-----dg~~~KlaiWDT 67 (209)
T KOG0080 11 TFKILLIGESGVGKSSLLLRFVSNT------------------FDDLHPTTIGVDFKVKVMQV-----DGKRLKLAIWDT 67 (209)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC------------------CCCCCCCEEEEEEEEEEEEE-----CCCEEEEEEEEC
T ss_conf 4799998168765789999987643------------------67667734434578899987-----582678998743
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-----HHHCCCCEEEEECCCCCCC
Q ss_conf 9875528999999986045699995588888347999999-----9873997899981767658
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ-----ADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~-----~~~~~lp~ilvINKiDr~~ 146 (701)
-|.--|..-+.+--|-+.|+|+|-|+..-=.-.-...|-+ +.+.++-.++|=||||+..
T Consensus 68 AGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080 68 AGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred CCHHHHHCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHH
T ss_conf 4527661168767455750699997122356775999999887644881376765425445012
No 319
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.89 E-value=0.015 Score=35.17 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=29.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCCCEE
Q ss_conf 527999868788977899999998087321422017-9561378088987085376
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGITIT 64 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgITi~ 64 (701)
=..+||+|+.++|||||...|+ |.....|++.= |....+....+..+.|++-
T Consensus 30 Ge~vaIvG~sGsGKSTLl~lL~---gl~~~~G~I~idg~~i~~~~~~~~r~~i~~v 82 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFL---RLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---HHCCCCCEEEECCEECCCCCHHHHHHHEEEE
T ss_conf 9999999999997999999996---0357895399998806736899997638996
No 320
>KOG0448 consensus
Probab=96.89 E-value=0.018 Score=34.60 Aligned_cols=135 Identities=19% Similarity=0.331 Sum_probs=74.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC----CCCCC-------CCEECCCCEEC--CCHHH---HHHHC-----C-----CEEE
Q ss_conf 79998687889778999999980----87321-------42201795613--78088---98708-----5-----3764
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYA----GKSHK-------IGEVHDGSATM--DWMEQ---EQERG-----I-----TITS 65 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~----g~i~~-------~g~v~~g~~~~--D~~~~---E~eRg-----I-----Ti~s 65 (701)
-|+|.|-.-+||+|++.+||... |+-+- .|. ++...|+ |-.++ =.-++ . +-+.
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega-dG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448 111 KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA-DGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC-CCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 799957877768999999998720766665531234663146-7731155168873432188877778751733003765
Q ss_pred EEEEEEECCCCCC--CEEEEEEECCCC---CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHHHCCCCEEEE-
Q ss_conf 0799996077787--138999817987---55289999999860456999955888883479999-9998739978999-
Q gi|254780264|r 66 ASTTVFWPGRDGG--QKKLTIIDTPGH---VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQADKYSVPRVIF- 138 (701)
Q Consensus 66 s~~sl~~~~~~~~--~~~iNlIDTPGH---~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~~~~lp~ilv- 138 (701)
+.+..+|++.... -.-+-|||+||- ..+...+-.-.-=+|-.|+|+.| |--..++++-+ +-+-++ -|-|++
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~Na-Entlt~sek~Ff~~vs~~-KpniFIl 267 (749)
T KOG0448 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNA-ENTLTLSEKQFFHKVSEE-KPNIFIL 267 (749)
T ss_pred EEEEEEECCCCCHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHHHHHHCC-CCCEEEE
T ss_conf 06899942863213305501205888888602459999764407758999617-638689899999985404-8847999
Q ss_pred ECCCCCCCCCH
Q ss_conf 81767658755
Q gi|254780264|r 139 CNKMDKMGADF 149 (701)
Q Consensus 139 INKiDr~~~d~ 149 (701)
.||.|.-..+.
T Consensus 268 nnkwDasase~ 278 (749)
T KOG0448 268 NNKWDASASEP 278 (749)
T ss_pred ECHHHHHCCCH
T ss_conf 64012202637
No 321
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.82 E-value=0.0092 Score=36.46 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=52.3
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEEC-----------------CCCCCHHHHHHHHHHHH------CCCCE
Q ss_conf 13899981798755289999999860456999955-----------------88888347999999987------39978
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDS-----------------NAGVEPQTETVWRQADK------YSVPR 135 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa-----------------~eGv~~qT~~vlr~~~~------~~lp~ 135 (701)
+|=+-+|||||.... -+..||.++|..|+=+.+ +.|...-++.||..-.. ..+.-
T Consensus 98 ~yDfIlIDcPPsl~~--Lt~nAl~aAD~vIiPlq~sf~dld~L~~vd~~~~~i~~~s~y~e~vw~~r~~ra~~~~~~idw 175 (261)
T pfam09140 98 DADFIVIDTPGSDSP--LSRLAHSRADTLVTPLNDSFVDFDLLGQVDPETFKVTRPSFYAEMVWEARKKRAQADRAPIDW 175 (261)
T ss_pred CCCEEEEECCCCCCH--HHHHHHHHHCEEEECCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 799999969985739--999999983987632440155143352137034321362178999999999874368988647
Q ss_pred EEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9998176765875555666411110
Q gi|254780264|r 136 VIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 136 ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
|++-|.+.-..+.-+..+++.-..+
T Consensus 176 ivlrnRl~~~~~rnk~~~~~~l~~L 200 (261)
T pfam09140 176 IVLRNRLSTLEARNKRRVEDALNEL 200 (261)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 9980562188878889999999999
No 322
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=96.81 E-value=0.034 Score=32.85 Aligned_cols=60 Identities=27% Similarity=0.433 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|.++|--++||++....+|-..-..++.. ....|-.+...+-.|. +..+++|||||-.
T Consensus 2 rivLlGktG~GKSstgNtILG~~~F~s~~~----------------~~~vT~~c~~~~~~~~-----gr~v~ViDTPgl~ 60 (200)
T pfam04548 2 RIVLVGKTGNGKSATGNSILGRKAFESKLR----------------AQGVTKTCQLVSRTWD-----GRIINVIDTPGLF 60 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCC----------------CCCCCEEEEEEEEEEC-----CEEEEEEECCCCC
T ss_conf 899979999843655766179753357898----------------8887413689999989-----9689999786635
Q ss_pred C
Q ss_conf 5
Q gi|254780264|r 92 D 92 (701)
Q Consensus 92 D 92 (701)
|
T Consensus 61 ~ 61 (200)
T pfam04548 61 D 61 (200)
T ss_pred C
T ss_conf 7
No 323
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=96.75 E-value=0.0026 Score=40.01 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=36.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----HCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 2799986878897789999999----808732142201795613780889870853764079999607778713899981
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY----YAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~----~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlID 86 (701)
+..+++||.+.|||||+-+|+- .+|.|+. ...|=|--|-.+..+.|.- +. -+||
T Consensus 36 k~sv~~G~SGVGKSTLiN~L~~~~~~~t~~iS~--------------~~~rGkHTTt~~~l~~l~~-----gg---~iiD 93 (161)
T pfam03193 36 KTSVLAGQSGVGKSTLLNALLPELDLRTGEISE--------------KLGRGRHTTTHVELFPLPG-----GG---LLID 93 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHH--------------HHCCCCCEEEEEEEEEECC-----CC---EEEE
T ss_conf 859998899988999998856344357775358--------------8638851121137998079-----95---8985
Q ss_pred CCCCCCCH
Q ss_conf 79875528
Q gi|254780264|r 87 TPGHVDFT 94 (701)
Q Consensus 87 TPGH~DF~ 94 (701)
|||--+|.
T Consensus 94 TPG~r~f~ 101 (161)
T pfam03193 94 TPGFRELG 101 (161)
T ss_pred CCCCCCCC
T ss_conf 89876257
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.75 E-value=0.0036 Score=39.05 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.2
Q ss_pred EECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 323431000122102488989871786
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
.|+++.|+..+.|+..|.+.+.++++.
T Consensus 71 ~~~i~iSa~~~~g~~~L~~~i~~~~~~ 97 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 973787012675799999999986023
No 325
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=96.69 E-value=0.0031 Score=39.49 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH---HHHHCCCCEEEEECCCCCCCC
Q ss_conf 52899999998604569999558888834799999---998739978999817676587
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR---QADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr---~~~~~~lp~ilvINKiDr~~~ 147 (701)
|+.+.+..-..=.|-+++|+.+ + ..+.+..+=| .|...++++++++||+|-+..
T Consensus 111 d~~~~~k~iAANIDqvlIV~A~-~-P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~ 167 (344)
T PRK12288 111 DYYDGVKPIAANIDQIVIVSAV-L-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDD 167 (344)
T ss_pred CCCCCEEEEEEECCEEEEEEEC-C-CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCH
T ss_conf 8888743579716889999968-9-9989789999999999869977999731440897
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.68 E-value=0.0021 Score=40.53 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHCEEEEEEECCCCC-CH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8604569999558888-83-47999999987399789998176765875555666411110268
Q gi|254780264|r 102 RVTDGAIALLDSNAGV-EP-QTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 102 ~~~DgailvVDa~eGv-~~-qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
.=.|-+++|+.+.+-- .. .-++.+=.|+..++++++++||+|-............+..++..
T Consensus 77 ANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~gy~ 140 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP 140 (287)
T ss_pred ECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCE
T ss_conf 7266899995268998998999999999997799689999862219948999999998729984
No 327
>KOG1490 consensus
Probab=96.67 E-value=0.0063 Score=37.52 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=71.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+.|+++|+|-..-||+|+.-.+ .+ +.++-.. |- .|-+ +|+....+.+..++..||||
T Consensus 167 ~trTlllcG~PNVGKSSf~~~v-------tr-advevqp-Ya----------FTTk----sL~vGH~dykYlrwQViDTP 223 (620)
T KOG1490 167 NTRTLLVCGYPNVGKSSFNNKV-------TR-ADDEVQP-YA----------FTTK----LLLVGHLDYKYLRWQVIDTP 223 (620)
T ss_pred CCCEEEEECCCCCCCHHHCCCC-------CC-CCCCCCC-CC----------CCCC----HHHHHHHHHHEEEEEECCCC
T ss_conf 8671798527887737643552-------01-5555577-66----------5510----12100203240234403884
Q ss_pred CCCCCHHH--------HHHHHHHHCEEEEE-EECCC----CCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCC-CHH--
Q ss_conf 87552899--------99999860456999-95588----88834799999998--739978999817676587-555--
Q gi|254780264|r 89 GHVDFTME--------VERSIRVTDGAIAL-LDSNA----GVEPQTETVWRQAD--KYSVPRVIFCNKMDKMGA-DFY-- 150 (701)
Q Consensus 89 GH~DF~~E--------v~~aL~~~Dgailv-VDa~e----Gv~~qT~~vlr~~~--~~~lp~ilvINKiDr~~~-d~~-- 150 (701)
|-.|=--| ...||.-.-.|||- .|-.| +|..|- .+++... =.+-|.|+|+||+|-+.. ++.
T Consensus 224 GILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490 224 GILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHCCCHHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
T ss_conf 1247605432179999999998756564113432212088899999-999876788628846999520025686566878
Q ss_pred --HHHHHHCCC
Q ss_conf --566641111
Q gi|254780264|r 151 --RSVEMISSR 159 (701)
Q Consensus 151 --~~l~~i~~~ 159 (701)
..++++.+.
T Consensus 303 ~~~ll~~~~~~ 313 (620)
T KOG1490 303 NQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHHHC
T ss_conf 89999998860
No 328
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.65 E-value=0.019 Score=34.40 Aligned_cols=128 Identities=24% Similarity=0.216 Sum_probs=63.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC------CCCEECCCCEECCCHHHHH--HHCCCEEEEEEEEEECCC---------
Q ss_conf 99986878897789999999808732------1422017956137808898--708537640799996077---------
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSH------KIGEVHDGSATMDWMEQEQ--ERGITITSASTTVFWPGR--------- 75 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~------~~g~v~~g~~~~D~~~~E~--eRgITi~ss~~sl~~~~~--------- 75 (701)
.-|-|=.++|||||.-+||...+-.+ ..|++. .|..-... ..=+.+...++.=-.++.
T Consensus 7 tiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~-----iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~ 81 (317)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS-----VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (317)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC-----CHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHH
T ss_conf 99830888899999999972778997899983761453-----3298873565326884477368730522899999999
Q ss_pred ---CCC--CEEEEEEECCCCCCCHHHHHH--------HHHHHCEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEEECC
Q ss_conf ---787--138999817987552899999--------9986045699995588888347-99999998739978999817
Q gi|254780264|r 76 ---DGG--QKKLTIIDTPGHVDFTMEVER--------SIRVTDGAIALLDSNAGVEPQT-ETVWRQADKYSVPRVIFCNK 141 (701)
Q Consensus 76 ---~~~--~~~iNlIDTPGH~DF~~Ev~~--------aL~~~DgailvVDa~eGv~~qT-~~vlr~~~~~~lp~ilvINK 141 (701)
..+ .+-.=+|-|-|=.|=..=+.. .--..|+.|-||||..+.+--. ..+. ..+-..-=++++||
T Consensus 82 ~~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~--~~Qi~~AD~illnK 159 (317)
T PRK11537 82 DNLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA--QSQVGYADRILLTK 159 (317)
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHH--HHHHHHCCEEEEEC
T ss_conf 8664357775479996257788399999986125656532036559998665557665303466--76663186899742
Q ss_pred CCCCCC
Q ss_conf 676587
Q gi|254780264|r 142 MDKMGA 147 (701)
Q Consensus 142 iDr~~~ 147 (701)
.|....
T Consensus 160 ~Dlv~~ 165 (317)
T PRK11537 160 TDVAGE 165 (317)
T ss_pred CCCCCH
T ss_conf 002365
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.62 E-value=0.0055 Score=37.88 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCC
Q ss_conf 99999986045699995588888347999999987--399789998176765
Q gi|254780264|r 96 EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK--YSVPRVIFCNKMDKM 145 (701)
Q Consensus 96 Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~--~~lp~ilvINKiDr~ 145 (701)
|..+++--+|..+.|+||..++.+.-..+-+.+.+ .+-|.++++||+|..
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~ 52 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9889787599999998898888878989999987537999789999894479
No 330
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.61 E-value=0.03 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=14.0
Q ss_pred HHHHHHHHHHCCCEE--EEEEEEEEEEECH
Q ss_conf 999999998489889--8017899998385
Q gi|254780264|r 591 RACFREAASKMGVQL--LEPLMKVEVTVPA 618 (701)
Q Consensus 591 ~~a~~~a~~~a~p~L--lEPi~~~eI~~p~ 618 (701)
|.|+..|+++-.|.| =||.-.++-.+-.
T Consensus 493 RiaiARAll~~~~ILILDEaTSaLD~~tE~ 522 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 999999983798989998987798999999
No 331
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=96.58 E-value=0.025 Score=33.72 Aligned_cols=110 Identities=24% Similarity=0.336 Sum_probs=69.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCC---EEEEEEE
Q ss_conf 5279998687889778999999980873214220179561378088987085376407999960777871---3899981
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQ---KKLTIID 86 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~---~~iNlID 86 (701)
|=.|++||=.-+||+||+-++ |.+-.| |.+ |.=| |++=..=.+.+.+ + ..|-+-|
T Consensus 158 lADVGLvGfPNAGKSTLLs~~---S~AkPK---iAd---YPFT---------TL~P~LGvv~~~~----~~Y~~~fviAD 215 (296)
T TIGR02729 158 LADVGLVGFPNAGKSTLLSAI---SNAKPK---IAD---YPFT---------TLEPNLGVVRVDD----NKYERSFVIAD 215 (296)
T ss_pred EEEEEEECCCCCCHHHHHHHH---HCCCCE---ECC---CCCC---------CCCCCEEEEEECC----CCEEEEEEEEE
T ss_conf 620210357887468888887---627882---238---7874---------5653112898748----74168899985
Q ss_pred CCCCC-----------CCHHHHHHHHHHHCEEEEEEECCCC---------CCHHHHHHHHHHHHC-----CCCEEEEECC
Q ss_conf 79875-----------5289999999860456999955888---------883479999999873-----9978999817
Q gi|254780264|r 87 TPGHV-----------DFTMEVERSIRVTDGAIALLDSNAG---------VEPQTETVWRQADKY-----SVPRVIFCNK 141 (701)
Q Consensus 87 TPGH~-----------DF~~Ev~~aL~~~DgailvVDa~eG---------v~~qT~~vlr~~~~~-----~lp~ilvINK 141 (701)
=||=+ +|-=-++|+- .=+-|||+..- +..+-+.+.+++.+. .-|.|+|+||
T Consensus 216 IPGLIEGAs~G~GLG~~FLKHIERt~----~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK 291 (296)
T TIGR02729 216 IPGLIEGASEGKGLGHKFLKHIERTR----LLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNK 291 (296)
T ss_pred CCCCHHHHHCCCCCCHHHHHHHHHEE----EEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEE
T ss_conf 68615666268875335545752026----68879806875342428988899999999999750873627807999860
Q ss_pred CCCC
Q ss_conf 6765
Q gi|254780264|r 142 MDKM 145 (701)
Q Consensus 142 iDr~ 145 (701)
||-+
T Consensus 292 ~Dl~ 295 (296)
T TIGR02729 292 IDLL 295 (296)
T ss_pred CCCC
T ss_conf 6778
No 332
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.57 E-value=0.0017 Score=41.16 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=50.9
Q ss_pred CCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCC--CCCCCCCCCC
Q ss_conf 71000011013345683689832655411104532104744542003567326413874--4432110127
Q gi|254780264|r 328 GSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLK--ETTTGDTLCD 396 (701)
Q Consensus 328 G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~--~~~~gdTl~~ 396 (701)
.|.-.+||.||+++.||+|.....++..+|.++.... .++++|.+|+-++|.=-+ ++.-||.|++
T Consensus 15 ~R~~~G~v~sG~v~~GD~v~i~Psg~~a~Vk~I~~~~----~~~~~A~aG~~v~l~L~~eidisRGdvi~s 81 (81)
T cd03695 15 FRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFD----GELDEAGAGESVTLTLEDEIDVSRGDVIVA 81 (81)
T ss_pred CCEEEEEEEECCEECCCEEEECCCCCCEEEEEEEECC----CCCCEECCCCEEEEEECCCCCCCCCCEEEC
T ss_conf 4689999933558389999968999818998999589----982488799828999787311579879859
No 333
>KOG0394 consensus
Probab=96.55 E-value=0.024 Score=33.85 Aligned_cols=117 Identities=25% Similarity=0.195 Sum_probs=77.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
.--|.|+|..++|||+|-.++.+. +-.+.-.-||-.--.+-.+. .+++...+.+=||-|
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~--------------------kF~~qykaTIgadFltKev~-Vd~~~vtlQiWDTAG 67 (210)
T KOG0394 9 LLKVIILGDSGVGKTSLMNQYVNK--------------------KFSQQYKATIGADFLTKEVQ-VDDRSVTLQIWDTAG 67 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--------------------HHHHHHCCCCCCEEEEEEEE-ECCEEEEEEEEECCC
T ss_conf 359999379984478999999888--------------------88887432000110322799-867699999873311
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECC-----CCCCHHHHHHHHHHH---HCCCCEEEEECCCCCCCC
Q ss_conf 7552899999998604569999558-----888834799999998---739978999817676587
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSN-----AGVEPQTETVWRQAD---KYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~-----eGv~~qT~~vlr~~~---~~~lp~ilvINKiDr~~~ 147 (701)
---|.+==.+--|-+|-|++|-|.. |.+...-...++||. -+.-|.|+.=||+|....
T Consensus 68 QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394 68 QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred HHHHHHCCCCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 777631464112477547898326864665118789999987468799775667997551147777
No 334
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=96.55 E-value=0.0021 Score=40.56 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHCEEEEEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 60456999955888883-4799999998739978999817676587555566641
Q gi|254780264|r 103 VTDGAIALLDSNAGVEP-QTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMI 156 (701)
Q Consensus 103 ~~DgailvVDa~eGv~~-qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i 156 (701)
=+|-+++|..+..-..+ .-++.+-.|+..++++++++||+|.. .|....+.++
T Consensus 111 NiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~-~d~~~~~~~~ 164 (353)
T PRK01889 111 NVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLC-EDVEEKIAEV 164 (353)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHHH
T ss_conf 17689999528999797899999999998699679999665566-7999999999
No 335
>KOG0079 consensus
Probab=96.55 E-value=0.026 Score=33.60 Aligned_cols=122 Identities=26% Similarity=0.319 Sum_probs=79.3
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEEC--CCCCC
Q ss_conf 9865671025279998687889778999999980873214220179561378088987085376407999960--77787
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWP--GRDGG 78 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~--~~~~~ 78 (701)
|+++| .+.=-.+|||...-|||+|+-++- ...-+ |+ | |.+..+-|... +..+.
T Consensus 1 mar~~--dhLfkllIigDsgVGKssLl~rF~--ddtFs--~s------Y-------------itTiGvDfkirTv~i~G~ 55 (198)
T KOG0079 1 MARDY--DHLFKLLIIGDSGVGKSSLLLRFA--DDTFS--GS------Y-------------ITTIGVDFKIRTVDINGD 55 (198)
T ss_pred CCCCH--HHHHHHHEECCCCCCHHHHHHHHH--HCCCC--CC------E-------------EEEEEEEEEEEEEECCCC
T ss_conf 96528--889888832687645789999985--25556--51------4-------------887533579998604886
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHHHC--CCCEEEEECCCCCCCC
Q ss_conf 138999817987552899999998604569999558888834799999-99873--9978999817676587
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QADKY--SVPRVIFCNKMDKMGA 147 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~~~~--~lp~ilvINKiDr~~~ 147 (701)
...+.+-||-|.--|..=+..--|-.-|.++|-|+..|-.-..-.-|- .+... .+|.+||=||-|-+..
T Consensus 56 ~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079 56 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred EEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
T ss_conf 899998614057999999887703886699999776636567599999999854964352210467887543
No 336
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.045 Score=32.01 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=10.1
Q ss_pred CHHHHHHHHCCCCCCCCCEEC
Q ss_conf 555566641111026833000
Q gi|254780264|r 148 DFYRSVEMISSRLGANPLVIQ 168 (701)
Q Consensus 148 d~~~~l~~i~~~l~~~~~~~~ 168 (701)
+.++.++.|++.||.+.++++
T Consensus 10 dm~eAl~~Vr~eLG~DAVILs 30 (412)
T PRK05703 10 DMREALKQIKEELGPDAVILS 30 (412)
T ss_pred CHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999999789949996
No 337
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.53 E-value=0.015 Score=35.05 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCCE--EEEEEEEEEEEECH
Q ss_conf 99999999848988--98017899998385
Q gi|254780264|r 591 RACFREAASKMGVQ--LLEPLMKVEVTVPA 618 (701)
Q Consensus 591 ~~a~~~a~~~a~p~--LlEPi~~~eI~~p~ 618 (701)
|.|+..|+++-.|. |=||--.++-.+-.
T Consensus 479 RialARAll~~p~IliLDEaTSaLD~~tE~ 508 (585)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDAETEA 508 (585)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 999999994698989986887689999999
No 338
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.49 E-value=0.008 Score=36.85 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=43.1
Q ss_pred CCCC-CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9875-528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 88 PGHV-DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 88 PGH~-DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|||+ --.-++...+..+|-.|-|+||-..+..+-..+-+.. .+-|+|+++||+|..
T Consensus 5 PGHm~ka~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCC
T ss_conf 588999999999998759999999867788786897599986--699679997343459
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.46 E-value=0.0077 Score=36.97 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=5.6
Q ss_pred CEECCCCHHHHHHHH
Q ss_conf 000122102488989
Q gi|254780264|r 266 SSFKNKGVQPLLDAV 280 (701)
Q Consensus 266 sa~~~~Gv~~LLd~i 280 (701)
|+....|...|++.+
T Consensus 76 s~~~~~~~~~l~~~l 90 (157)
T cd01858 76 SINNPFGKGSLIQLL 90 (157)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 323864689999999
No 340
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.45 E-value=0.016 Score=34.85 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=48.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC--
Q ss_conf 799986878897789999999808732142201795613780889870853764079999607778713899981798--
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG-- 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG-- 89 (701)
-++++|.+++|||||+-+|- |.-.. -=|+.++ +|.+. -.|||||
T Consensus 3 ri~~vG~~gcGKTtL~q~L~---G~~~l----------------------ykKTQAv--e~~d~-------~~IDTPGEy 48 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLY---GNDTL----------------------YKKTQAV--EFNDK-------GDIDTPGEY 48 (148)
T ss_pred EEEEECCCCCCCHHHHHHHH---CCHHH----------------------HCCCCEE--ECCCC-------CCCCCCHHH
T ss_conf 06875145657316788861---60332----------------------1000013--30475-------565880666
Q ss_pred --CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --75528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 90 --HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 90 --H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|.-..+-....+.=+|--++|-.|.++-+.=.- ..+.-..-|.|=+|.|.|..
T Consensus 49 ~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 49 FEHPRWYHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCCCCCCCEEEEEECCCCC
T ss_conf 52467899998876113325543002684444884---21344666558998603466
No 341
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.45 E-value=0.034 Score=32.84 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=64.0
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
++-=||-++|--+-||++.+.+++-... . ....|.+. |.+-.-++= .-.++++|+|||
T Consensus 29 ~~sltILvlGKtGVGKSsTINSifgE~~--------~---~~~aF~~~------t~r~~~v~~-----tv~G~kl~iIDT 86 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK--------A---ATSAFQSE------TLRVREVSG-----TVDGFKLNIIDT 86 (249)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHCCCCC--------C---CCCCCCCC------CCCEEEEEE-----EECCEEEEEECC
T ss_conf 6436999980687645776776508541--------3---44776778------865089987-----533448998608
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHHHCCCCEEEEECCCCCCCCCH--HHHHHHHCCCCCC
Q ss_conf 98755289999999860456999955888883479999-999873997899981767658755--5566641111026
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQADKYSVPRVIFCNKMDKMGADF--YRSVEMISSRLGA 162 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~~~~lp~ilvINKiDr~~~d~--~~~l~~i~~~l~~ 162 (701)
||-.+=..+-. +-.+--..+ |...+...-++|++-++|-...|. .-.+..|-+.||.
T Consensus 87 PGL~~~~~~~~------------------~N~k~l~~iKr~l~~~~~DvvLYvDRLD~~r~d~~D~~ll~~iT~~fG~ 146 (249)
T cd01853 87 PGLLESVMDQR------------------VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP 146 (249)
T ss_pred CCCCCCCCCCH------------------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98776654221------------------3099999999996289997899984576624586428999999987678
No 342
>KOG0077 consensus
Probab=96.44 E-value=0.015 Score=35.02 Aligned_cols=107 Identities=22% Similarity=0.298 Sum_probs=63.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-+-++|==.+|||||.-+|= -++.|- ++- |..-+.--+.. ++..++-+|--||.
T Consensus 22 KllFlGLDNAGKTTLLHMLK-----dDrl~q------hvP----------TlHPTSE~l~I-----g~m~ftt~DLGGH~ 75 (193)
T KOG0077 22 KLLFLGLDNAGKTTLLHMLK-----DDRLGQ------HVP----------TLHPTSEELSI-----GGMTFTTFDLGGHL 75 (193)
T ss_pred EEEEEEECCCCHHHHHHHHC-----CCCCCC------CCC----------CCCCCHHHHEE-----CCCEEEEECCCCHH
T ss_conf 18999515775266898873-----300113------578----------76897677313-----57158997256679
Q ss_pred CCHHHHHHH----HHHHCEEEEEEECCCCCCHH-----HHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 528999999----98604569999558888834-----7999999987399789998176765875
Q gi|254780264|r 92 DFTMEVERS----IRVTDGAIALLDSNAGVEPQ-----TETVWRQADKYSVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 92 DF~~Ev~~a----L~~~DgailvVDa~eGv~~q-----T~~vlr~~~~~~lp~ilvINKiDr~~~d 148 (701)
...++ ...+||.+.+|||..--.-| -+.++--..-.++|.++..||||++++-
T Consensus 76 ----qArr~wkdyf~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~ 137 (193)
T KOG0077 76 ----QARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ----HHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf ----99988887876543168530112177767789999988768877158610111655688733
No 343
>PRK10416 cell division protein FtsY; Provisional
Probab=96.41 E-value=0.066 Score=30.98 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=9.9
Q ss_pred EEEEECCHHHHHH-HHHHHHH
Q ss_conf 6876066478999-9999874
Q gi|254780264|r 453 TNLSGMGELHLEI-IVDRMLR 472 (701)
Q Consensus 453 ~il~g~GElhLev-~l~~L~~ 472 (701)
.++=+.|-||-+. +++.|+.
T Consensus 381 viiDTAGRl~~~~~LM~EL~k 401 (499)
T PRK10416 381 LIADTAGRLQNKSHLMEELKK 401 (499)
T ss_pred EEEECCCCCCCCHHHHHHHHH
T ss_conf 998577643260999999999
No 344
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.39 E-value=0.074 Score=30.64 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=62.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH------HCCC-CCCCCEE--------------CCCCEECCCHHHH------HHH--C-
Q ss_conf 2799986878897789999999------8087-3214220--------------1795613780889------870--8-
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY------YAGK-SHKIGEV--------------HDGSATMDWMEQE------QER--G- 60 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~------~~g~-i~~~g~v--------------~~g~~~~D~~~~E------~eR--g- 60 (701)
=-++++|+=-+||+|+.|+|.- .+|. ++.+-++ ..+..+.|+.+.+ .++ |
T Consensus 27 PqiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 84899888787589999998788755568972764406999733886512477437863489899999999988753267
Q ss_pred -CCEEEEEEEEEECCCCCCCEEEEEEECCCCC--------CCHHHHHHH-----HHHHCEEEE-EEECCCCCCHHHHHHH
Q ss_conf -5376407999960777871389998179875--------528999999-----986045699-9955888883479999
Q gi|254780264|r 61 -ITITSASTTVFWPGRDGGQKKLTIIDTPGHV--------DFTMEVERS-----IRVTDGAIA-LLDSNAGVEPQTETVW 125 (701)
Q Consensus 61 -ITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~--------DF~~Ev~~a-----L~~~Dgail-vVDa~eGv~~qT~~vl 125 (701)
-.+....+.+...+. +--.++|||-||-. .-..+.... ++--..-|| |++|. +-..|..++
T Consensus 107 ~~~~s~~~l~lei~gP--~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~--~D~anq~~l 182 (240)
T smart00053 107 NKGISPVPINLRVYSP--HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN--VDLANSDAL 182 (240)
T ss_pred CCCCCCCCEEEEEECC--CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC--CCHHHHHHH
T ss_conf 8876788559999479--998854414754124678998567999999999998479880699984078--567661999
Q ss_pred HHHH---HCCCCEEEEECCCCCCC
Q ss_conf 9998---73997899981767658
Q gi|254780264|r 126 RQAD---KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 126 r~~~---~~~lp~ilvINKiDr~~ 146 (701)
+.|. ..+-..|-||+|.|.+.
T Consensus 183 ~lAr~~Dp~g~RTiGVlTKpDl~~ 206 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 999971999982899973533457
No 345
>KOG0092 consensus
Probab=96.38 E-value=0.022 Score=33.97 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-++++|....|||||+.++.. |..+. + + -=||-.+-.+--+.- .....++-+=||-|--
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk--~~F~e------------~----~--e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQE 65 (200)
T KOG0092 7 KVVLLGDSGVGKSSLVLRFVK--DQFHE------------N----I--EPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQE 65 (200)
T ss_pred EEEEECCCCCCCHHHHHHHHH--CCCCC------------C----C--CCCCCEEEEEEEEEE-CCCEEEEEEEECCCCC
T ss_conf 999986787770241122232--75663------------2----3--454000789999984-8957899998767730
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC----EEEEECCCCCC
Q ss_conf 5289999999860456999955888883479999999873997----89998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP----RVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp----~ilvINKiDr~ 145 (701)
.|-+=.-.=.|-++.||||-|...-=.-++-.-|=+=++++.| +.|+=||+|-.
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CCCCCCCCEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 0335561010477679999855667899999999999986279875999832516541
No 346
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=96.35 E-value=0.01 Score=36.17 Aligned_cols=56 Identities=23% Similarity=0.392 Sum_probs=43.5
Q ss_pred CCCC-CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9875-528999999986045699995588888347999999987399789998176765
Q gi|254780264|r 88 PGHV-DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 88 PGH~-DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
|||+ --.-++...+..+|-.|.|+||...+...-..+-+.. .+-|+|+++||+|..
T Consensus 8 PGHm~ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~ 64 (282)
T PRK09563 8 PGHMAKARREIKENLKKVDVVIEVLDARIPLSSENPMIDKII--GNKPRLLVLNKSDLA 64 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCC
T ss_conf 889999999999998769999999765477675887599997--689769997555488
No 347
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=96.33 E-value=0.081 Score=30.42 Aligned_cols=133 Identities=15% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHEE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 10252-79998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 7 IEDSR-NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 7 ~e~iR-Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
+++.+ ||||.|..++||+|++.+|= -.|..++|.+-+.. +.++...-.|+..+.. -+.|-
T Consensus 31 ~~~~~lnIavtGesG~GkSsfINalR-------g~g~e~~~aA~tGv----------vetT~~~~~Y~hp~~p--nV~lw 91 (375)
T pfam05049 31 ISSAPLKIAVTGDSGNGKSSFINALR-------GIGHEEDGSAPTGV----------VETTMKRTPYSHPHFP--NVVLW 91 (375)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHH-------CCCCCCCCCCCCCC----------EEECCCCCCCCCCCCC--CEEEE
T ss_conf 44382479985489986789999874-------78987777687687----------6632675567899999--80796
Q ss_pred ECCC--CCCCHHHHHHH---HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----------HH
Q ss_conf 1798--75528999999---986045699995588888347999999987399789998176765875----------55
Q gi|254780264|r 86 DTPG--HVDFTMEVERS---IRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGAD----------FY 150 (701)
Q Consensus 86 DTPG--H~DF~~Ev~~a---L~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d----------~~ 150 (701)
|=|| -..|..+-+-. ..-.|.-|++.+.. ....--.+-....+.|-+..+|=+|+|+.... -.
T Consensus 92 DLPG~gt~~f~~~~Yl~~~~f~~yDfFiiiss~r--f~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e 169 (375)
T pfam05049 92 DLPGLGATNFTVETYLEEMKFSEYDFFIIISSER--FSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKE 169 (375)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHH
T ss_conf 2899998998989999874856477899996775--43201899999998389479998623676065762589999989
Q ss_pred HHHHHHCCCC
Q ss_conf 5666411110
Q gi|254780264|r 151 RSVEMISSRL 160 (701)
Q Consensus 151 ~~l~~i~~~l 160 (701)
.+++.|++..
T Consensus 170 ~~Lq~IR~~c 179 (375)
T pfam05049 170 KVLQNIQDNC 179 (375)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 348
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.031 Score=33.09 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=31.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH----HCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 799986878897789999999----80873214220179561378088987085376407
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILY----YAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~----~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
-+||+|+.++|||||+..|+- ..|.|.- +|.-..+....+..+.|++-..-
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i-----dg~di~~~~~~~~r~~i~~v~Q~ 83 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILI-----DGQDIREVTLDSLRRAIGVVPQD 83 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE-----CCEECCCCCHHHHHHCEEEEECC
T ss_conf 99999999998999999974385488748999-----99992318999997237899507
No 349
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=96.28 E-value=0.01 Score=36.12 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=32.7
Q ss_pred HHCEEEEEEECCC-CCCH-HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 6045699995588-8883-47999999987399789998176765
Q gi|254780264|r 103 VTDGAIALLDSNA-GVEP-QTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 103 ~~DgailvVDa~e-Gv~~-qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
=.|-+++|+.+.+ .... ...+.+=.|...++++++++||+|..
T Consensus 80 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~ 124 (298)
T PRK00098 80 NVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLV 124 (298)
T ss_pred ECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 447899998568898998999999999998699589996424564
No 350
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=96.28 E-value=0.024 Score=33.83 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=78.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE-EEEEECCCC
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996077787138-999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKK-LTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~-iNlIDTPGH 90 (701)
-++++|....||+|+...++-..-.+.. . .+. |........... +... +-++||||.
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~--~----------~~~------~~~~~~~~~~~~----~~~~~~~~~d~pg~ 59 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITS--P----------KPQ------TTRNRISGILTT----GASQNIIFIDTPGF 59 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCC--C----------CCH------HHHHHHHEEEEC----CCCCCEEEEECCCC
T ss_conf 1121157765336677766324101002--3----------101------234332001223----66551578625876
Q ss_pred CCC-H--------HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 552-8--------999999986045699995588888347999999987399789998176765
Q gi|254780264|r 91 VDF-T--------MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 91 ~DF-~--------~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
..- . .+...++.-.|-.++++|+.++.....+.++.++.....|.++.+||+|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (278)
T TIGR00436 60 HEPEKHKLGELLNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNK 123 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 5124567788888888753123226889863344556404688987652021010012233310
No 351
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.081 Score=30.40 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 799986878897789999999808732-142201-79561378088987085376407
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
.++|+|+.++|||||...|+- .+. ..|++. +|.-..+....+..+.|++-..-
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g---~~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~ 90 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFR---FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHH---HCCCCCCEEEECCEECCCCCHHHHHHHCEEEECC
T ss_conf 999999999879999999998---7288887899999995407999999515377035
No 352
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.25 E-value=0.012 Score=35.68 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=19.9
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 025279998687889778999999
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL 31 (701)
+.-++++++|..-.||+||.-+|+
T Consensus 81 ~~~~~i~ivG~PNVGKSSlIN~L~ 104 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 776268997788866999999985
No 353
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.22 E-value=0.08 Score=30.44 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=31.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 2799986878897789999999808732-142201-79561378088987085376407
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
-.++|+|..++|||||+..|+ |... ..|++. +|.-..+....+..+.|++-...
T Consensus 48 e~vaIvG~sGsGKSTL~~ll~---gl~~p~~G~I~idg~di~~~~~~~lr~~i~~v~Q~ 103 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFF---RMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHH---HCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECC
T ss_conf 999999999981999999996---05667888899998996879999997505799456
No 354
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.20 E-value=0.052 Score=31.61 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--------EEEEEECCCCCCCEEEE
Q ss_conf 7999868788977899999998087321422017956137808898708537640--------79999607778713899
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--------STTVFWPGRDGGQKKLT 83 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--------~~sl~~~~~~~~~~~iN 83 (701)
-++++|.|-.||+|++-++.-.. .+..+.+..+..|..|-+|+- .-|-||-++ ++.... .++-...+-
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l--~~~~~~kVR 94 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKL--DDGLKFKVR 94 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEE--CCCCEEEEE
T ss_conf 99962672067366999999985-468889877877643037767-89981333688766531048883--698448999
Q ss_pred EEECCCCC-------------------------CCHHHHHHHHH------HHCEEEEEEECCCC------CCHHHHHHHH
Q ss_conf 98179875-------------------------52899999998------60456999955888------8834799999
Q gi|254780264|r 84 IIDTPGHV-------------------------DFTMEVERSIR------VTDGAIALLDSNAG------VEPQTETVWR 126 (701)
Q Consensus 84 lIDTPGH~-------------------------DF~~Ev~~aL~------~~DgailvVDa~eG------v~~qT~~vlr 126 (701)
||||-|++ -|..-...+-+ ..=|-++.-|+.-| --..-+++++
T Consensus 95 LiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ 174 (492)
T pfam09547 95 LVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99652567557555546897513048987888786888764654133157714499956887567664442357999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEC
Q ss_conf 998739978999817676587555566641111026833000
Q gi|254780264|r 127 QADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ 168 (701)
Q Consensus 127 ~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~ 168 (701)
++..-+-|.|+++|-.+-...+-...-+++.++.+..+++++
T Consensus 175 ELk~i~KPFiillNs~~P~s~et~~L~~eL~ekY~v~Vl~vn 216 (492)
T pfam09547 175 ELKEIGKPFIILLNSQRPYSEETKELRDELEEKYDVPVLPVN 216 (492)
T ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999709988999838998998999999999998599579967
No 355
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.20 E-value=0.037 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCE--EEEEEEEEEEEEC
Q ss_conf 999999999848988--9801789999838
Q gi|254780264|r 590 ARACFREAASKMGVQ--LLEPLMKVEVTVP 617 (701)
Q Consensus 590 ~~~a~~~a~~~a~p~--LlEPi~~~eI~~p 617 (701)
-|.|+..|+++-.|. |=||.-.++-.+-
T Consensus 483 QRiaiARAll~~~~iliLDEaTs~LD~~te 512 (575)
T PRK11160 483 RRLGIARALLHDAPLLLLDEPTEGLDAETE 512 (575)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 999999999459999998498666799999
No 356
>KOG0075 consensus
Probab=96.17 E-value=0.0094 Score=36.39 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=75.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHH-HHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79998687889778999999980873214220179561378088-98708537640799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQ-EQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~-E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
-+.++|---+||||++-... + -|+.++ =..+|.-|. ..+.++..|-+-|-||.
T Consensus 22 el~lvGLq~sGKtt~Vnvia-------~----------g~~~edmiptvGfnmr---------kvtkgnvtik~wD~gGq 75 (186)
T KOG0075 22 ELSLVGLQNSGKTTLVNVIA-------R----------GQYLEDMIPTVGFNMR---------KVTKGNVTIKLWDLGGQ 75 (186)
T ss_pred EEEEEEECCCCCCEEEEEEE-------C----------CCCHHHHCCCCCCEEE---------EECCCCEEEEEEECCCC
T ss_conf 58888532478525888875-------0----------6745664302463268---------83158369999836997
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHH----HHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 55289999999860456999955888-883479----9999998739978999817676587
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAG-VEPQTE----TVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eG-v~~qT~----~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
.-|-+-=.+=-|.+|.-+-+|||++- --...+ .++....-.++|.++.=||+|++++
T Consensus 76 ~rfrsmWerycR~v~aivY~VDaad~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075 76 PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCC
T ss_conf 60888999986038689999616786534312999998850321148717996255667553
No 357
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.0098 Score=36.28 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=61.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-------CCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 999868788977899999998087-------3214220179561378088987085376407999960777871389998
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGK-------SHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~-------i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
.-|||...+||||+.. .+|. ....|.-..|++++|+. - .+. --||
T Consensus 128 y~viG~pgsGKTtal~----~sgl~Fpl~~~~~~~~~~~~gT~~cdww-------------------f----~de-aVlI 179 (1188)
T COG3523 128 YMVIGPPGSGKTTALL----NSGLQFPLAEQMGALGLAGPGTRNCDWW-------------------F----TDE-AVLI 179 (1188)
T ss_pred EEEECCCCCCCCHHHH----CCCCCCCCHHHHCCCCCCCCCCCCCCCC-------------------C----CCC-EEEE
T ss_conf 5885488898400875----1553666155533122268887335754-------------------2----553-4898
Q ss_pred ECCCC------CCCHHH-----------HHHHHHHHCEEEEEEECCCCCCHH--HH-HH----------HHHHHHCCCCE
Q ss_conf 17987------552899-----------999998604569999558888834--79-99----------99998739978
Q gi|254780264|r 86 DTPGH------VDFTME-----------VERSIRVTDGAIALLDSNAGVEPQ--TE-TV----------WRQADKYSVPR 135 (701)
Q Consensus 86 DTPGH------~DF~~E-----------v~~aL~~~DgailvVDa~eGv~~q--T~-~v----------lr~~~~~~lp~ 135 (701)
||=|- .|+.+. -.|..+-.+|+||.+|+.+=.... -+ .+ +++...-++|.
T Consensus 180 DtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PV 259 (1188)
T COG3523 180 DTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPV 259 (1188)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 58752443667502348889998889997355788863799978999738999999999999999999999841567763
Q ss_pred EEEECCCCCCC
Q ss_conf 99981767658
Q gi|254780264|r 136 VIFCNKMDKMG 146 (701)
Q Consensus 136 ilvINKiDr~~ 146 (701)
.+++||+|.+.
T Consensus 260 Yl~lTk~Dll~ 270 (1188)
T COG3523 260 YLVLTKADLLP 270 (1188)
T ss_pred EEEEECCCCCC
T ss_conf 89986210021
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.12 E-value=0.016 Score=34.99 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=21.1
Q ss_pred EECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 323431000122102488989871786
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
.++++-||..+.|+..|.+.+...++.
T Consensus 76 ~~~~~~sa~~~~g~~~l~~~i~~~~~~ 102 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 967998422665789999999997354
No 359
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.11 E-value=0.04 Score=32.37 Aligned_cols=53 Identities=21% Similarity=0.114 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-CCCCEECC-CCEECCCHHHHHHHCCCEEEEE
Q ss_conf 79998687889778999999980873-21422017-9561378088987085376407
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKS-HKIGEVHD-GSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i-~~~g~v~~-g~~~~D~~~~E~eRgITi~ss~ 67 (701)
-++|+|+.++|||||+..|+ |.. ...|++.= |.-..+....+..+.|++-..-
T Consensus 30 ~vaivG~sGsGKSTll~ll~---gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~ 84 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQ---RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQE 84 (237)
T ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECC
T ss_conf 99999999985999999996---77657987899999995518999998601899587
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.08 E-value=0.02 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred EECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 323431000122102488989871786
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
.++++.|+.++.|+..|++.+.+.++.
T Consensus 78 ~~~~~~sa~~~~~~~~l~~~~~~~~~~ 104 (276)
T TIGR03596 78 IKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCEEEEHHCCCCCHHHHHHHHHHHHHH
T ss_conf 918986430745389999999999999
No 361
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.99 E-value=0.12 Score=29.36 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+|.++|--.+||++....||-...-.++. .....|-.+..-+-.|. +..+++|||||-.
T Consensus 2 rIvLlGktGsGKSstgNtILG~~~F~s~~----------------~~~svT~~c~~~~~~~~-----gr~v~VIDTPg~~ 60 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKL----------------SASSVTKTCQKESAVWD-----GRRVNVIDTPGLF 60 (196)
T ss_pred EEEEECCCCCCCHHHHEEECCCCCCCCCC----------------CCCCCCEEEEEEEEEEC-----CCEEEEEECCCCC
T ss_conf 89997899986153403256876667889----------------99987558888889988-----9379999677635
Q ss_pred CC
Q ss_conf 52
Q gi|254780264|r 92 DF 93 (701)
Q Consensus 92 DF 93 (701)
|-
T Consensus 61 dt 62 (196)
T cd01852 61 DT 62 (196)
T ss_pred CC
T ss_conf 65
No 362
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.03 Score=33.19 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHCCCCCCCCCEECC
Q ss_conf 875555666411110268330002
Q gi|254780264|r 146 GADFYRSVEMISSRLGANPLVIQL 169 (701)
Q Consensus 146 ~~d~~~~l~~i~~~l~~~~~~~~~ 169 (701)
..+.++.+..+++.||.+.++++.
T Consensus 8 a~~m~eAl~~Vr~eLG~DAVILSt 31 (404)
T PRK06995 8 GATSRDALRLVREALGADAVILSN 31 (404)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 699999999999997899399979
No 363
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.11 Score=29.59 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=32.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 2799986878897789999999808732-142201-79561378088987085376407
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
-.++|+|+.++|||||...|+ |... ..|++. +|.-..+....+..+.|++-...
T Consensus 29 e~i~IvG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 84 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIP---RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQD 84 (234)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCC
T ss_conf 999999899982999999996---67667886899999996608999997317999368
No 364
>KOG0076 consensus
Probab=95.93 E-value=0.023 Score=33.86 Aligned_cols=112 Identities=22% Similarity=0.242 Sum_probs=72.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-HCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 2799986878897789999999-808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY-YAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~-~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
=++-|+|-=-+||||+++++=- ++++. |. +| +.+. --|+....-+.... ...++++|-=|
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~---~~-------l~--~~ki--~~tvgLnig~i~v~-----~~~l~fwdlgG 78 (197)
T KOG0076 18 YSVLILGLDNAGKTTFLEALKTDFSKAY---GG-------LN--PSKI--TPTVGLNIGTIEVC-----NAPLSFWDLGG 78 (197)
T ss_pred HHHEEECCCCCCCHHHHHHHHHHHHHHH---CC-------CC--HHHE--ECCCCEEECCEEEC-----CCEEEEEECCC
T ss_conf 3100242445785208988777887651---68-------88--8881--01224031316412-----54167788678
Q ss_pred CCCCHHHHHHHH-----HHHCEEEEEEECCCC-----CCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 755289999999-----860456999955888-----883479999999873997899981767658
Q gi|254780264|r 90 HVDFTMEVERSI-----RVTDGAIALLDSNAG-----VEPQTETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev~~aL-----~~~DgailvVDa~eG-----v~~qT~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
- |-.++| -.+-|.|-||||..- ...+-+.++++=..+|+|.++..||=|+..
T Consensus 79 Q-----e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076 79 Q-----ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred H-----HHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHH
T ss_conf 0-----8789999999997263477641777788888799999999878762871543400433030
No 365
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.92 E-value=0.13 Score=29.15 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCC--EECCCCEECCCHHHHHHHCCCEEE-EEEEEEEC-------------CCCC
Q ss_conf 9986878897789999999808732142--201795613780889870853764-07999960-------------7778
Q gi|254780264|r 14 GIMAHIDAGKTTTTERILYYAGKSHKIG--EVHDGSATMDWMEQEQERGITITS-ASTTVFWP-------------GRDG 77 (701)
Q Consensus 14 ~iiaHvd~GKTTL~d~LL~~~g~i~~~g--~v~~g~~~~D~~~~E~eRgITi~s-s~~sl~~~-------------~~~~ 77 (701)
-|-|-.++|||||..+||.....-.+.+ ..+-|..-.|..-. ++.|..+.. +.=.+.+. ....
T Consensus 4 iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~ 82 (174)
T pfam02492 4 VLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLELKL 82 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99348878899999999984448984799993365302079998-70696189974886645433369999999985578
Q ss_pred CCEEEEEEECCCCCCCHH--HHHHHHHHHCEEEEEEECC---CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 713899981798755289--9999998604569999558---888834799999998739978999817676587
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTM--EVERSIRVTDGAIALLDSN---AGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~--Ev~~aL~~~DgailvVDa~---eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
...-.-+|.|-|-.|-.. +.... -..|+.|.||||. ++...+ ....+|. ..-=++++||+|....
T Consensus 83 ~~~d~iiIE~sGla~p~~i~~~~~~-~~~~~~i~vvDa~~~~~~~~~~-~~~~~Qi---~~AD~vvlNK~Dl~~~ 152 (174)
T pfam02492 83 PRLDLLFIETTGLACPAPVLDLRSD-LGLDGVVTVVDVKNFTEGEDIP-EKAPDQI---AFADLIVINKTDLAPA 152 (174)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC-CCCCEEEEEEECHHHHHCCCCH-HHHHHHH---HHCCEEEEEHHHCCCC
T ss_conf 9999999958766770777765320-2654599999723433002007-8999999---8769999846653782
No 366
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=95.91 E-value=0.0063 Score=37.50 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCC----CCCEEHHHHHHHCCCEEEEEECCCCCEEEE--CCCC--CCCC
Q ss_conf 3321165467100001101334568368983265----541110453210474454200356732641--3874--4432
Q gi|254780264|r 319 FKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKG----KKERVGRMLQMHSNSREDIDEAYCGDIIAL--AGLK--ETTT 390 (701)
Q Consensus 319 ~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~----~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~Gl~--~~~~ 390 (701)
-.++.-+..|.+..++|.+|+++.||+++....+ .+.+|.++.. .+.++++|.||+-+++ .|++ ++..
T Consensus 6 D~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f~~v~VrsIq~----~~~~v~~a~aG~~~~~~l~~i~~~~i~r 81 (87)
T cd03694 6 DEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDRSLLRK 81 (87)
T ss_pred EEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEE----CCCCCCEECCCCEEEEEECCCCHHHCCC
T ss_conf 137986985689899984571538999999216789667789988998----8829789769989889986999999067
Q ss_pred CCCCC
Q ss_conf 11012
Q gi|254780264|r 391 GDTLC 395 (701)
Q Consensus 391 gdTl~ 395 (701)
|..|.
T Consensus 82 G~VL~ 86 (87)
T cd03694 82 GMVLV 86 (87)
T ss_pred CCEEE
T ss_conf 66996
No 367
>KOG0070 consensus
Probab=95.91 E-value=0.025 Score=33.62 Aligned_cols=113 Identities=27% Similarity=0.286 Sum_probs=72.4
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+=..|-++|==.+||||+.=.| +.|++-.. ==||-.++=.+.|+ +..+++-|.=
T Consensus 16 ~e~~IlmvGLD~AGKTTILykl--------k~~E~vtt-------------vPTiGfnVE~v~yk-----n~~f~vWDvG 69 (181)
T KOG0070 16 KEMRILMVGLDAAGKTTILYKL--------KLGEIVTT-------------VPTIGFNVETVEYK-----NISFTVWDVG 69 (181)
T ss_pred CEEEEEEEECCCCCCCEEEEEC--------CCCCCCCC-------------CCCCCCCEEEEEEC-----CEEEEEEECC
T ss_conf 4679999961689860156750--------25874147-------------78645313699986-----6189998158
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCC--CHHHHHHHHHHH---HCCCCEEEEECCCCCCCC
Q ss_conf 87552899999998604569999558888--834799999998---739978999817676587
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGV--EPQTETVWRQAD---KYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv--~~qT~~vlr~~~---~~~lp~ilvINKiDr~~~ 147 (701)
|.--+-.==..-.+-.+|.|.|||+..-- .---+.+.+... -.+.|.++|-||.|-+++
T Consensus 70 Gq~k~R~lW~~Y~~nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070 70 GQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred CCCCCCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCC
T ss_conf 8735453135320377279999817738889999999999976834477369998421204245
No 368
>KOG0086 consensus
Probab=95.90 E-value=0.11 Score=29.62 Aligned_cols=118 Identities=22% Similarity=0.245 Sum_probs=77.0
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
+-.=-+-++|..+.||+.|.-+++...= + ++-+ . --|+-.-|-.++. -++..++.+-||
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf------k-Ddss-H--------TiGveFgSrIinV-----GgK~vKLQIWDT 65 (214)
T KOG0086 7 DYLFKFLVIGSAGTGKSCLLHQFIENKF------K-DDSS-H--------TIGVEFGSRIVNV-----GGKTVKLQIWDT 65 (214)
T ss_pred HHHHEEEEECCCCCCHHHHHHHHHHHHC------C-CCCC-C--------EEEEEECCCEEEE-----CCCEEEEEEEEC
T ss_conf 2430268864688863279999998641------3-6546-4--------4202201102540-----571899998634
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEECCCCCCC
Q ss_conf 98755289999999860456999955888883479999----999873997899981767658
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW----RQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl----r~~~~~~lp~ilvINKiDr~~ 146 (701)
-|.--|.+-+.+--|-+-||+||-|+..-=.-...+-| |.....++.+||+=||-|...
T Consensus 66 AGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086 66 AGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCH
T ss_conf 257889999998753656427998524555699999988877764799679999377121441
No 369
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.84 E-value=0.13 Score=29.14 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEE
Q ss_conf 2799986878897789999999808732-142201-79561378088987085376
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITIT 64 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ 64 (701)
-.++|+|+.++|||||...|+ |... ..|++. +|.-..+....+..+.|++-
T Consensus 31 e~v~ivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 83 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALF---RLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHEEEE
T ss_conf 899999999998999999996---79718984899999996619999997407999
No 370
>KOG0088 consensus
Probab=95.82 E-value=0.017 Score=34.73 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=68.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-+.++|.---|||+|+=+..... ...+ .+ -|+++|..+-... ..+...-+|+-||-|.
T Consensus 15 K~VLLGEGCVGKtSLVLRy~Enk-Fn~k---------Hl----------sTlQASF~~kk~n-~ed~ra~L~IWDTAGQ- 72 (218)
T KOG0088 15 KIVLLGEGCVGKTSLVLRYVENK-FNCK---------HL----------STLQASFQNKKVN-VEDCRADLHIWDTAGQ- 72 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCHH---------HH----------HHHHHHHHHCCCC-CCCCEEEEEEEECCCH-
T ss_conf 89997487556068999998723-2304---------67----------8999887633046-2111311432124445-
Q ss_pred CCHHHHHHHH-----HHHCEEEEEEECCCCCCHHHHHH----HHHHHHCCCCEEEEECCCCC
Q ss_conf 5289999999-----86045699995588888347999----99998739978999817676
Q gi|254780264|r 92 DFTMEVERSI-----RVTDGAIALLDSNAGVEPQTETV----WRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL-----~~~DgailvVDa~eGv~~qT~~v----lr~~~~~~lp~ilvINKiDr 144 (701)
|-..|| |-+|||+||-|...--.-|-..- +|+++...+..++|=||||.
T Consensus 73 ----ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL 130 (218)
T KOG0088 73 ----ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL 130 (218)
T ss_pred ----HHHHCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_conf ----7652357537707996289986444688999999999999871883599995374467
No 371
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.81 E-value=0.01 Score=36.17 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=35.0
Q ss_pred HCEEEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
Q ss_conf 0456999955888883--47999999987399789998176765875555
Q gi|254780264|r 104 TDGAIALLDSNAGVEP--QTETVWRQADKYSVPRVIFCNKMDKMGADFYR 151 (701)
Q Consensus 104 ~DgailvVDa~eGv~~--qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~ 151 (701)
.|-+++||.+++.--. +-.+.|=.|...++.++++|||+|.+..+...
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~ 129 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAA 129 (301)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
T ss_conf 55199999626899898899999999977699579999753367616778
No 372
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.74 E-value=0.057 Score=31.40 Aligned_cols=142 Identities=23% Similarity=0.221 Sum_probs=73.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC------CCCCCCEE--CCCCEECCCHHHHHHHCCCEEEEEEEEEECCC--------
Q ss_conf 799986878897789999999808------73214220--17956137808898708537640799996077--------
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAG------KSHKIGEV--HDGSATMDWMEQEQERGITITSASTTVFWPGR-------- 75 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g------~i~~~g~v--~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~-------- 75 (701)
-.-|=|=.++|||||.-+||.+.. ..+..|++ +++....+..++ ....+.=.+.+.-.
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~------~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEE------VVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC------EEEECCCCEEEECCCHHHHHHH
T ss_conf 7998116779989999999854589807999855740221677641348975------7983697078703421589999
Q ss_pred ---C-CCCEEEEEEECCCCCC-------CHH-HHHHHHHHHCEEEEEEECCCCCCHH---HHHHHHHHHHCCCCEEEEEC
Q ss_conf ---7-8713899981798755-------289-9999998604569999558888834---79999999873997899981
Q gi|254780264|r 76 ---D-GGQKKLTIIDTPGHVD-------FTM-EVERSIRVTDGAIALLDSNAGVEPQ---TETVWRQADKYSVPRVIFCN 140 (701)
Q Consensus 76 ---~-~~~~~iNlIDTPGH~D-------F~~-Ev~~aL~~~DgailvVDa~eGv~~q---T~~vlr~~~~~~lp~ilvIN 140 (701)
+ .+..-.=+|-|-|=.| |.. +..+..--.|+.|-||||.-..... -+...+|+.- -=++++|
T Consensus 77 ~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlN 153 (323)
T COG0523 77 RLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLN 153 (323)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHH---CCEEEEE
T ss_conf 9985256899899968877786999998606512245404133699984788654567799999999986---7999983
Q ss_pred CCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 7676587555566641111026
Q gi|254780264|r 141 KMDKMGADFYRSVEMISSRLGA 162 (701)
Q Consensus 141 KiDr~~~d~~~~l~~i~~~l~~ 162 (701)
|.|....+--..++.....++.
T Consensus 154 K~Dlv~~~~l~~l~~~l~~lnp 175 (323)
T COG0523 154 KTDLVDAEELEALEARLRKLNP 175 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
T ss_conf 6456898899999999997599
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.73 E-value=0.065 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99986878897789999999808
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAG 35 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g 35 (701)
+||+|+-++|||||++.|...-|
T Consensus 25 taIvGpsGsGKSTLl~~i~~~lg 47 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89999999988999999998747
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.73 E-value=0.011 Score=35.97 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 5528999999986045699995588888347999999987399789998176765875
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d 148 (701)
.||...+.....--.-.+.|||+.+=-.+--..+.+... +-|.++|+||+|-+..+
T Consensus 51 ~d~~~~l~~i~~~~~lVv~VvDi~Df~gS~~~~l~~~~~--~~~v~lV~NK~DLLP~~ 106 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKS 106 (360)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEEHHHCCCCC
T ss_conf 999999987423683799998641477653464999838--98589999805428876
No 375
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.70 E-value=0.055 Score=31.48 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=12.5
Q ss_pred HHHHHHHHHHCCCEE--EEEEEEEEEEE
Q ss_conf 999999998489889--80178999983
Q gi|254780264|r 591 RACFREAASKMGVQL--LEPLMKVEVTV 616 (701)
Q Consensus 591 ~~a~~~a~~~a~p~L--lEPi~~~eI~~ 616 (701)
|.|+.-|+++-.|.| =||--.++-.+
T Consensus 457 RiaIARAll~~p~ILILDEaTSaLD~~t 484 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHF 484 (547)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 9999999974999999968555789999
No 376
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=95.68 E-value=0.0094 Score=36.41 Aligned_cols=37 Identities=11% Similarity=0.338 Sum_probs=23.6
Q ss_pred CEEEEECHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1387400431788999-------999886300234578999863
Q gi|254780264|r 200 WDVVEIPEDMKDSANS-------YRDKMIESIVELDDSAMDSYL 236 (701)
Q Consensus 200 ~~~~~~~~~~~~~~~~-------~~~~lle~i~~~dd~~~~~~l 236 (701)
...+..|..+.++..- |-+-+++.++..|++..++.-
T Consensus 206 qhyiklPkslneWkaifyfaGvmfGdGCvdrianndeevfnklk 249 (1145)
T TIGR00491 206 QHYIKLPKSLNEWKAIFYFAGVMFGDGCVDRIANNDEEVFNKLK 249 (1145)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH
T ss_conf 21344541145566534431000247401011056168998875
No 377
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.66 E-value=0.074 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCEE--EEEEEEEEEEECH
Q ss_conf 999999998489889--8017899998385
Q gi|254780264|r 591 RACFREAASKMGVQL--LEPLMKVEVTVPA 618 (701)
Q Consensus 591 ~~a~~~a~~~a~p~L--lEPi~~~eI~~p~ 618 (701)
|.|+..|+++-.|.| =||.-.++-.+-.
T Consensus 459 RialARAll~~p~iliLDEaTSaLD~~tE~ 488 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 999999995499989980876668999999
No 378
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.066 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEE
Q ss_conf 7555566641111026833000234555665302
Q gi|254780264|r 147 ADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180 (701)
Q Consensus 147 ~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~ 180 (701)
-.+.+.++.|+..||.+..+++.---..+.|.|+
T Consensus 10 ~t~~EAm~~IK~ELG~DAVILssk~V~~~G~~Gl 43 (388)
T PRK12723 10 PTYNEVIETVKKKYGKNARVMTYKTIPHGGIFGL 43 (388)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEC
T ss_conf 9999999999999789919997158735975103
No 379
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.59 E-value=0.02 Score=34.34 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=19.8
Q ss_pred EECCCCCEECCCCHHHHHHHHHHHCC
Q ss_conf 32343100012210248898987178
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAVVDYLP 285 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i~~~lP 285 (701)
.-|++.||.++.|++.|++.+.++..
T Consensus 100 ~~v~lvSa~~~~gi~~L~~~i~~~~~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 31799766578698999999999746
No 380
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.57 E-value=0.028 Score=33.31 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=9.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
+++|+|....||+||.-+|+
T Consensus 102 ~i~ivG~PNVGKSsliN~L~ 121 (155)
T cd01849 102 TVGVIGYPNVGKSSVINALL 121 (155)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998777744778999984
No 381
>KOG3883 consensus
Probab=95.54 E-value=0.18 Score=28.20 Aligned_cols=118 Identities=21% Similarity=0.230 Sum_probs=76.7
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+.--|.++|--.-|||.+++.|+|-...+.. -+.-+.++ .-.+|++-. ++-...+.|-||-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~--------e~~pTiED---------iY~~svet~--rgarE~l~lyDTa 68 (198)
T KOG3883 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGT--------ELHPTIED---------IYVASVETD--RGAREQLRLYDTA 68 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCC--------CCCCCHHH---------HEEEEEECC--CCHHHEEEEEECC
T ss_conf 6407999777452289999999851678897--------66663442---------246764068--7810168886524
Q ss_pred CCCCCHHHHHH-HHHHHCEEEEEEECCCCCCHHHHHHHHH-H----HHCCCCEEEEECCCCCC
Q ss_conf 87552899999-9986045699995588888347999999-9----87399789998176765
Q gi|254780264|r 89 GHVDFTMEVER-SIRVTDGAIALLDSNAGVEPQTETVWRQ-A----DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~DF~~Ev~~-aL~~~DgailvVDa~eGv~~qT~~vlr~-~----~~~~lp~ilvINKiDr~ 145 (701)
|-.+-..|.-+ -+..+||-+||-|...--.-|-..++.. . .+-.+|+++.-||.||.
T Consensus 69 Glq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883 69 GLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCC
T ss_conf 455760020276710576579996379988988999999998625565512289973001013
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.061 Score=31.19 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 2202578888541027
Q gi|254780264|r 424 DQERMSLALSRLVAED 439 (701)
Q Consensus 424 d~~kL~~~L~~L~~~D 439 (701)
|...|...|.+|...|
T Consensus 413 ~~~~l~~~l~~l~~~~ 428 (557)
T PRK12727 413 SAESLLDLLERLRDYK 428 (557)
T ss_pred CHHHHHHHHHHHCCCC
T ss_conf 9999999999836999
No 383
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.50 E-value=0.067 Score=30.92 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHCCCE--EEEEEEEEEEEE
Q ss_conf 999999999848988--980178999983
Q gi|254780264|r 590 ARACFREAASKMGVQ--LLEPLMKVEVTV 616 (701)
Q Consensus 590 ~~~a~~~a~~~a~p~--LlEPi~~~eI~~ 616 (701)
-|.|+..|+++-.+. |=||.-.++-.+
T Consensus 486 QRialARall~~~~iliLDE~TSalD~~t 514 (581)
T PRK11176 486 QRIAIARALLRDSPILILDEATSALDTES 514 (581)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 99999999967999899858633589999
No 384
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.40 E-value=0.044 Score=32.10 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCC
Q ss_conf 45699995588888347999999987--3997899981767658
Q gi|254780264|r 105 DGAIALLDSNAGVEPQTETVWRQADK--YSVPRVIFCNKMDKMG 146 (701)
Q Consensus 105 DgailvVDa~eGv~~qT~~vlr~~~~--~~lp~ilvINKiDr~~ 146 (701)
|-.|-|+||-.-+..+-..+-+...+ .+-|+|+++||.|-..
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCC
T ss_conf 98999997037867688749999986069984899985232189
No 385
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=95.37 E-value=0.044 Score=32.08 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=33.5
Q ss_pred EEEEECCCC--CCCHHHHHHHHHHHCE-EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 999817987--5528999999986045-699995588888347999999987399789998176765875
Q gi|254780264|r 82 LTIIDTPGH--VDFTMEVERSIRVTDG-AIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGAD 148 (701)
Q Consensus 82 iNlIDTPGH--~DF~~Ev~~aL~~~Dg-ailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d 148 (701)
+|-+.-... -||...+ ..++-.++ .+.|||+.+=-.+--..+.|..- +-|+++|+||+|.+..+
T Consensus 48 Y~~~~~~~~~~~d~~~~l-~~i~~~~~lvv~VvDi~Df~gS~~~~l~~~ig--~~~vilV~NKvDLLP~~ 114 (367)
T PRK13796 48 YNEIQDVSLTDDDFLRLL-NGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKS 114 (367)
T ss_pred CCCCCCCCCCHHHHHHHH-HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEECHHCCCCC
T ss_conf 683456768879999999-86253670899999744577651350898718--98489999823338876
No 386
>KOG0087 consensus
Probab=95.37 E-value=0.15 Score=28.70 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 10252799986878897789999999808732142201795613780889870853764079999607778713899981
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlID 86 (701)
.+..=-|.+||...-||+-|..++... .. ..+...|+ |+...+-. +. .+++..+.++=|
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrn--EF----~~~SksTI----------Gvef~t~t--~~---vd~k~vkaqIWD 69 (222)
T KOG0087 11 YDYLFKIVLIGDSAVGKSNLLSRFTRN--EF----SLESKSTI----------GVEFATRT--VN---VDGKTVKAQIWD 69 (222)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHCCC--CC----CCCCCCCE----------EEEEEEEE--EE---ECCCEEEEEEEC
T ss_conf 553789999578765536778774335--46----75666624----------68877500--23---568178876532
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEECCCCCC
Q ss_conf 79875528999999986045699995588888347-999999987---399789998176765
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQADK---YSVPRVIFCNKMDKM 145 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~~---~~lp~ilvINKiDr~ 145 (701)
|-|---|.+=+++=-|-+=||+||-|.....+-+- ++=+++++. .+++++|+=||.|..
T Consensus 70 TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~ 132 (222)
T KOG0087 70 TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred CCCHHHHCCCCCHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHH
T ss_conf 611456500111221344036999950467788889999999985588771799961220454
No 387
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=95.36 E-value=0.2 Score=27.82 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=78.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCC----------CCE-ECCCC-----EECCCHH----HHHHHCCCEEEEEE
Q ss_conf 2527999868788977899999998087321----------422-01795-----6137808----89870853764079
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHK----------IGE-VHDGS-----ATMDWME----QEQERGITITSAST 68 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~----------~g~-v~~g~-----~~~D~~~----~E~eRgITi~ss~~ 68 (701)
|-.=|+|=|-.++||+||+|+|...- +++ |++ ..+|. +-|+-+. .=..=|+=|+|.+.
T Consensus 37 nA~~vG~TG~PGaGKSTl~~~l~~~l--rRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~pt 114 (333)
T TIGR00750 37 NAHVVGITGVPGAGKSTLVEKLIMEL--RRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPT 114 (333)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 90787664688885777999998999--7659768999887975975514545688775442222332289856767766
Q ss_pred EEEECCCC-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 99960777-----------8713899981798755289999999860456999955888883479999999873997899
Q gi|254780264|r 69 TVFWPGRD-----------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVI 137 (701)
Q Consensus 69 sl~~~~~~-----------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~il 137 (701)
+=...|.. --+|=+=||-|=|== .+||.-+ +++|..|+|-=+--|=+.|+-+ +=-.-+-=|+
T Consensus 115 rG~lGGls~at~~~~~lldA~G~DVI~vETVGVG--QSEVdi~-~~aDT~v~v~~pg~GDd~Q~iK----aG~mEiaDI~ 187 (333)
T TIGR00750 115 RGSLGGLSKATRELVKLLDAAGYDVILVETVGVG--QSEVDII-NMADTFVVVTIPGTGDDVQGIK----AGVMEIADIY 187 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC--HHHHHHH-HHHCEEEEEECCCCCCHHHHHH----HHHHEEEEEE
T ss_conf 6752578799999999998638987999841575--2487887-3415058985488783466665----4430232487
Q ss_pred EECCCCCCCCC
Q ss_conf 98176765875
Q gi|254780264|r 138 FCNKMDKMGAD 148 (701)
Q Consensus 138 vINKiDr~~~d 148 (701)
||||=|+..++
T Consensus 188 VVNKaD~~~a~ 198 (333)
T TIGR00750 188 VVNKADGEGAE 198 (333)
T ss_pred EEECCCCCCHH
T ss_conf 88168876658
No 388
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.32 E-value=0.14 Score=28.81 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCE--EEEEEEEEEEEECHHHHHHHHHHHHHCCEEE
Q ss_conf 99999999848988--9801789999838577457999997277079
Q gi|254780264|r 591 RACFREAASKMGVQ--LLEPLMKVEVTVPAEYVGDVIGDLSSRRGQI 635 (701)
Q Consensus 591 ~~a~~~a~~~a~p~--LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i 635 (701)
|.|+..|+++-.|. |=||.-.++-.+ +..+-+....+.+.|-.|
T Consensus 484 RiaiARall~~p~iliLDEaTSaLD~~t-E~~i~~~l~~~~~~~T~i 529 (593)
T PRK10790 484 LLALARVLVETPQILILDEATASIDSGT-EQAIQQALAAIREHTTLV 529 (593)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCEEE
T ss_conf 9999999955989999838777889999-999999999972899899
No 389
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=95.28 E-value=0.077 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=19.9
Q ss_pred EECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 323431000122102488989871786
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
.++++.|+.++.|+..+++.+.+.++.
T Consensus 81 ~~~~~~sa~~~~~~~~l~~~~~~~~~~ 107 (282)
T PRK09563 81 VKALAINAKEGQGVKKILKAAKKLGKE 107 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 956997466743388999999999999
No 390
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=95.27 E-value=0.14 Score=28.97 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=78.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--------EEEEEECCCCCCCEEEE
Q ss_conf 7999868788977899999998087321422017956137808898708537640--------79999607778713899
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--------STTVFWPGRDGGQKKLT 83 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--------~~sl~~~~~~~~~~~iN 83 (701)
=||++|.|=.||+||+-++.--- .+.-+.+..+..|-=|=+||= .=|=||.++ +++.... ++-.+.+-
T Consensus 19 YiGvVGpVRTGKSTfIKkFMeLl-vLPNi~n~~~k~Ra~DELPQS-aAGktimTTEPKFvPn~Avei~in--~~~k~~vR 94 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELL-VLPNIENEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININ--EGTKFKVR 94 (492)
T ss_pred EEEEECCCCCCCCCHHHHEEHEE-ECCCCCCHHHHHHHHCCCCCC-CCCCEEEECCCCCCCCCEEEEEEC--CCCEEEEE
T ss_conf 89866274278521111100102-238886111120231068877-686802104878668851899864--88207899
Q ss_pred EEECCCCC-------------------------CCHHHHHHHHH--HHC----EEEEEEECCCC------CCHHHHHHHH
Q ss_conf 98179875-------------------------52899999998--604----56999955888------8834799999
Q gi|254780264|r 84 IIDTPGHV-------------------------DFTMEVERSIR--VTD----GAIALLDSNAG------VEPQTETVWR 126 (701)
Q Consensus 84 lIDTPGH~-------------------------DF~~Ev~~aL~--~~D----gailvVDa~eG------v~~qT~~vlr 126 (701)
|+||=|+. =|.--.+-+=| +.| |.+|--|+.=+ --+.=|+|++
T Consensus 95 LVDcVGY~V~GA~GY~ee~kprMv~TPWYd~eIPF~EAAEIGTrKVI~dHSTiG~lvTTDGsI~dI~RedYv~AEERVve 174 (492)
T TIGR02836 95 LVDCVGYIVKGALGYEEEDKPRMVSTPWYDEEIPFEEAAEIGTRKVISDHSTIGLLVTTDGSITDIPREDYVEAEERVVE 174 (492)
T ss_pred EEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99862301578545002786401158888888872355123771011577507899711784034673134003357767
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEC
Q ss_conf 998739978999817676587555566641111026833000
Q gi|254780264|r 127 QADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ 168 (701)
Q Consensus 127 ~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~ 168 (701)
.+.+-+-|.|++||=.-=..-+=...-+++.+++...+++++
T Consensus 175 ELKe~~KPFIilLNs~~P~~pET~~L~~eLe~KYDvpV~~~~ 216 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPLAPETKALRKELEEKYDVPVLVVD 216 (492)
T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 764079967999768897886579999986520884458964
No 391
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=95.27 E-value=0.018 Score=34.59 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHCEEEEEEECCCCC-CH-HHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 98604569999558888-83-4799999998739978999817676587
Q gi|254780264|r 101 IRVTDGAIALLDSNAGV-EP-QTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 101 L~~~DgailvVDa~eGv-~~-qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
..=+|-+++|+.+.+-- .+ +..+.|=.|...++|+++++||+|-...
T Consensus 86 VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~ 134 (351)
T PRK12289 86 IANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSP 134 (351)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCH
T ss_conf 5670359999965789988779999999999879978999865774998
No 392
>KOG0071 consensus
Probab=95.21 E-value=0.12 Score=29.27 Aligned_cols=123 Identities=20% Similarity=0.117 Sum_probs=74.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
+-.+|--.+||||+.-.|-... +. . ||-+ +.|..+...+++-++|.=|--|.-.
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~--~~-----~-----------------~ipT--vGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071 20 ILMLGLDAAGKTTILYKLKLGQ--SV-----T-----------------TIPT--VGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred EEEEECCCCCCEEHHHHHHCCC--CC-----C-----------------CCCC--CCEEEEEEEEEEEEEEEEECCCCHH
T ss_conf 7888126688400346876289--76-----4-----------------0355--4204777773006885212267122
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC--CHHH---HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 2899999998604569999558888--8347---9999999873997899981767658755556664111102683
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGV--EPQT---ETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANP 164 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv--~~qT---~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~ 164 (701)
...-=.+--..+.|.|.|+|++..= ...- ..++..-.-..++++++-||=|.+.+ ..+++|++.|...+
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~ 147 (180)
T KOG0071 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELER 147 (180)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCC---CCHHHHHHHHCCCC
T ss_conf 048898635677259999824321049999999999857876612058988546655221---69899888754231
No 393
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.18 E-value=0.098 Score=29.88 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9998179875528999999986045699995588-888347999999987399789998176
Q gi|254780264|r 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNA-GVEPQTETVWRQADKYSVPRVIFCNKM 142 (701)
Q Consensus 82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~e-Gv~~qT~~vlr~~~~~~lp~ilvINKi 142 (701)
+.+||||--+ .-.|.++|.-+|.||+|..-.. |+. -.+++++.+...++|..++|||-
T Consensus 166 ~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~glh-D~kr~~el~~~f~ip~~iViNr~ 224 (284)
T COG1149 166 LLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFGLH-DLKRALELVEHFGIPTGIVINRY 224 (284)
T ss_pred EEEEECCCCC--CCHHHHHHCCCCEEEEEECCCCCCHH-HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 2588579978--97177764168779998168852366-89999999998399549999667
No 394
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.063 Score=31.09 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=37.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEE--EEECC
Q ss_conf 799986878897789999999-808732142201795613780889870853764079999607778713899--98179
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILY-YAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLT--IIDTP 88 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~-~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iN--lIDTP 88 (701)
=++|+|+-++||||+.|++.+ ..|...+.+ ..+..|.. .+| -+++.+.|.+. .+|..|.|. +..+.
T Consensus 27 i~lI~G~nGsGKSSIldAI~~ALyG~~~~~~----~~~~~~~i----~~g--~~~~~V~l~F~-~~g~~Y~i~R~~~r~~ 95 (908)
T COG0419 27 IFLIVGPNGAGKSSILDAITFALYGKTPRLG----AFSLDDLI----RAG--EKSASVELEFE-VNGKKYRIEREFRRGR 95 (908)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCHHHHH----HCC--CCCEEEEEEEE-ECCEEEEEEEEEECCC
T ss_conf 3799899999788999999999828987754----40155898----658--86079999999-8997999999863477
Q ss_pred C
Q ss_conf 8
Q gi|254780264|r 89 G 89 (701)
Q Consensus 89 G 89 (701)
+
T Consensus 96 ~ 96 (908)
T COG0419 96 G 96 (908)
T ss_pred C
T ss_conf 8
No 395
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.96 E-value=0.16 Score=28.55 Aligned_cols=90 Identities=21% Similarity=0.165 Sum_probs=53.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC-EECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 99986878897789999999808732142-20179561378088987085376407999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIG-EVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g-~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
+.+.|.-+.||||++-.|.+.-.. .| +|- ..| -+-++||||..
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la~---~g~~Vl----~vD-----------------------------d~iiiD~~~~~ 45 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK---RGKRVL----LID-----------------------------DYVLIDTPPGL 45 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCEEE----EEC-----------------------------CCEEECCCCCC
T ss_conf 898589977689999999999998---899699----986-----------------------------71788589988
Q ss_pred CCHHHH---HHHHHHHCEEEEEEECCCCCCHHHHHH----HHHHHHCCCCEEEEEC
Q ss_conf 528999---999986045699995588888347999----9999873997899981
Q gi|254780264|r 92 DFTMEV---ERSIRVTDGAIALLDSNAGVEPQTETV----WRQADKYSVPRVIFCN 140 (701)
Q Consensus 92 DF~~Ev---~~aL~~~DgailvVDa~eGv~~qT~~v----lr~~~~~~lp~ilvIN 140 (701)
+. .. ..++..+|..++++.....-...+... .+.......+..+++|
T Consensus 46 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 99 (99)
T cd01983 46 GL--LVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CH--HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 84--6899998787589589965984889999999999999841069815788539
No 396
>PRK09601 translation-associated GTPase; Reviewed
Probab=94.95 E-value=0.11 Score=29.55 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=52.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC---------CCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf 799986878897789999999808732---------14220179561378088987085376407999960777871389
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSH---------KIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKL 82 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~---------~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~i 82 (701)
.+||+|-...|||||--+|-...-.+. ..|.+. +-|.+-+.-.. .|....--.-.+
T Consensus 4 kiGivGlPnvGKSTlFnalT~~~~~~~nyPf~Ti~pn~g~v~----VpD~r~~~l~~-----------~~~p~k~i~a~v 68 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVP----VPDPRLDKLAE-----------IVKPKKIVPTTI 68 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE----CCCHHHHHHHH-----------HHCCCCEEEEEE
T ss_conf 488877999988999999967998645899888788006885----78545899987-----------628765011258
Q ss_pred EEEECCCCCCCH-------HHHHHHHHHHCEEEEEEECCCC
Q ss_conf 998179875528-------9999999860456999955888
Q gi|254780264|r 83 TIIDTPGHVDFT-------MEVERSIRVTDGAIALLDSNAG 116 (701)
Q Consensus 83 NlIDTPGH~DF~-------~Ev~~aL~~~DgailvVDa~eG 116 (701)
+++|.||-+--. ..-...+|.+|+-+.||+|.+.
T Consensus 69 ~~vDiaGLv~gAs~G~GLGN~FL~~iR~~DaiihVVr~F~d 109 (364)
T PRK09601 69 EFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFED 109 (364)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 99965776787534677428999988734756775000268
No 397
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.94 E-value=0.093 Score=30.02 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.3
Q ss_pred CCCCCEECCCCHHHHHHHHHHH
Q ss_conf 3431000122102488989871
Q gi|254780264|r 262 VLCGSSFKNKGVQPLLDAVVDY 283 (701)
Q Consensus 262 v~~gsa~~~~Gv~~LLd~i~~~ 283 (701)
|++.||.++.|++.|++.+-++
T Consensus 130 V~lvSa~~g~gi~~l~~~i~~~ 151 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999688898999999999987
No 398
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=94.90 E-value=0.011 Score=35.97 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999868788977899999
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERI 30 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~L 30 (701)
++|||..++|||||.-+|
T Consensus 31 ~~~IG~SGAGKSTLLR~i 48 (253)
T TIGR02315 31 VAVIGPSGAGKSTLLRCI 48 (253)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999737887267999877
No 399
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=94.90 E-value=0.1 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=12.2
Q ss_pred EECCCCCEECCCCHHHHHHHH
Q ss_conf 323431000122102488989
Q gi|254780264|r 260 FPVLCGSSFKNKGVQPLLDAV 280 (701)
Q Consensus 260 ~pv~~gsa~~~~Gv~~LLd~i 280 (701)
+++++.|+.++.|+++|.+.+
T Consensus 149 Y~~i~iS~~~~~gl~~L~~~L 169 (351)
T PRK12289 149 YQPLFISVEQGIGLEALLKQL 169 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 828999678996899999987
No 400
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=94.87 E-value=0.14 Score=28.94 Aligned_cols=14 Identities=0% Similarity=0.043 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 25677899999718
Q gi|254780264|r 544 PGVRKGIESMLSSG 557 (701)
Q Consensus 544 ~~v~~g~~~a~~~G 557 (701)
..+..+|.+.-...
T Consensus 236 ~~l~~~F~e~~~~~ 249 (298)
T PRK00098 236 EDLEHAFPEFRPLS 249 (298)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99988678899986
No 401
>KOG2485 consensus
Probab=94.79 E-value=0.18 Score=28.21 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=46.8
Q ss_pred EEEEEEECCCCCCCHH-HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHC
Q ss_conf 3899981798755289-999999860456999955888883479999999873997899981767658-75555666411
Q gi|254780264|r 80 KKLTIIDTPGHVDFTM-EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG-ADFYRSVEMIS 157 (701)
Q Consensus 80 ~~iNlIDTPGH~DF~~-Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~-~d~~~~l~~i~ 157 (701)
+.-+.=+=|||+-=.- -...-|+.+|-.|=|=||--=+...-+..-+++- -.|.|+|+||+|-.. .+...+++.+.
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 288656576478999999986556553799961134677655488897337--775499984010368333159999987
Q ss_pred C
Q ss_conf 1
Q gi|254780264|r 158 S 158 (701)
Q Consensus 158 ~ 158 (701)
.
T Consensus 100 ~ 100 (335)
T KOG2485 100 W 100 (335)
T ss_pred H
T ss_conf 6
No 402
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.73 E-value=0.14 Score=28.91 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 256778999997188
Q gi|254780264|r 544 PGVRKGIESMLSSGP 558 (701)
Q Consensus 544 ~~v~~g~~~a~~~Gp 558 (701)
..+..+|.+......
T Consensus 234 ~~l~~~F~ei~~~~~ 248 (287)
T cd01854 234 EELAHYFPEFRELAG 248 (287)
T ss_pred HHHHHHCHHHHHHHC
T ss_conf 999886878999867
No 403
>KOG4252 consensus
Probab=94.69 E-value=0.071 Score=30.77 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=77.3
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
..|+.=-+.|+|.-.-||+|++.+.- .|+..+ -.+.+-..|+++...+--| .+..+-|-
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryC--kgifTk---dykktIgvdflerqi~v~~----------------Edvr~mlW 74 (246)
T KOG4252 16 DYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK---DYKKTIGVDFLERQIKVLI----------------EDVRSMLW 74 (246)
T ss_pred HHHHHEEEEEECCCCCCHHHHHHHHH--CCCCCC---CCCCCCCHHHHHHHHHHHH----------------HHHHHHHH
T ss_conf 24553789998788624689999985--244556---6540003235267777408----------------99999998
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf 17987552899999998604569999558888834799999---9987399789998176765
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR---QADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr---~~~~~~lp~ilvINKiDr~ 145 (701)
||-|.-.|-.=+.+--|-+.+++||.+-..--.--.-.-|+ +...+++|.+++=||||-.
T Consensus 75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252 75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 722316677899987425640489985451777899999999999875568758764220056
No 404
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.69 E-value=0.089 Score=30.12 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.2
Q ss_pred EEECCCCCCHHHHHHHHHHHC
Q ss_conf 998687889778999999980
Q gi|254780264|r 14 GIMAHIDAGKTTTTERILYYA 34 (701)
Q Consensus 14 ~iiaHvd~GKTTL~d~LL~~~ 34 (701)
-|-|-.++|||||.-+||...
T Consensus 4 iitGFLGaGKTTll~~lL~~~ 24 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 998488899999999998478
No 405
>PRK13760 putative RNA-associated protein; Provisional
Probab=94.67 E-value=0.19 Score=28.03 Aligned_cols=65 Identities=23% Similarity=0.452 Sum_probs=52.0
Q ss_pred EEEEEEECHHHHHHHHHHHHHCCEEEEEEEC-CCCEEEEEEEEEHHHHCCHHHHHHHHHCCEEEEEE
Q ss_conf 8999983857745799999727707974535-89839999996043733847887863086379899
Q gi|254780264|r 610 MKVEVTVPAEYVGDVIGDLSSRRGQIQGQEN-RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTM 675 (701)
Q Consensus 610 ~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~-~~~~~~i~a~iP~~e~~gf~~~LR~~T~G~a~~~~ 675 (701)
+++.|.+|.++.|++|+.|.+ -|.+..++- .++.......+|...--.|-+.|++.|+|.|....
T Consensus 164 ~~l~v~iP~~~a~~a~~~l~~-~g~v~kEeW~~dGs~~~vv~ipaG~~~~~~~~l~~~TkG~~~~ki 229 (233)
T PRK13760 164 ARIAVKIPGEYAGKAYGELAK-FGEIKKEEWQSDGSWVAVLEIPAGLQDEFYDKLNKLTKGEAETKI 229 (233)
T ss_pred EEEEEEECHHHHHHHHHHHHH-HCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 799999678998899999997-472010101589848999998975489999999875688347999
No 406
>KOG0096 consensus
Probab=94.63 E-value=0.23 Score=27.52 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=72.7
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-++-.+++|-..-||||+..+.| +|.-.+... -|+..+.-.+.+- .+.+...+|.-||-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~------------------at~Gv~~~pl~f~-tn~g~irf~~wdta 67 (216)
T KOG0096 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYP------------------ATLGVEVHPLLFD-TNRGQIRFNVWDTA 67 (216)
T ss_pred CEEEEEEECCCCCCCCCHHHHHH--CCCCEECCC------------------CCCEEEEEEEEEE-CCCCCEEEEEEECC
T ss_conf 52899983478644453134353--032102136------------------7510377654550-45684788863044
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH--HHCCCCEEEEECCCCCC
Q ss_conf 8755289999999860456999955888883479999-999--87399789998176765
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA--DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~--~~~~lp~ilvINKiDr~ 145 (701)
|---|.+--..----.-.||+..|+..-+.-+.-.-| |-+ ..+++|+++.=||+|-.
T Consensus 68 gqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096 68 GQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred CCEEECCCCCCCEEECCEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECC
T ss_conf 421232324452770214688861001455622217899999986278704544501215
No 407
>KOG1486 consensus
Probab=94.62 E-value=0.12 Score=29.29 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=60.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
-|++||-..-||+||.-.+-. .-+.+.+-+ ++ |+.+-+=-+.|. +..|.++|-||-+
T Consensus 64 RValIGfPSVGKStlLs~iT~---T~SeaA~ye----FT-----------TLtcIpGvi~y~-----ga~IQllDLPGIi 120 (364)
T KOG1486 64 RVALIGFPSVGKSTLLSKITS---THSEAASYE----FT-----------TLTCIPGVIHYN-----GANIQLLDLPGII 120 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHC---CHHHHHCCE----EE-----------EEEEECCEEEEC-----CCEEEEECCCCCC
T ss_conf 799964887447878887641---102221102----46-----------787303168766-----8347996275300
Q ss_pred CCHH-------HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 5289-------9999998604569999558888834799999998739
Q gi|254780264|r 92 DFTM-------EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYS 132 (701)
Q Consensus 92 DF~~-------Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~ 132 (701)
.=.+ +|.+..|-+|-.++|.||..+ ..|-+.+=+.+..-+
T Consensus 121 eGAsqgkGRGRQviavArtaDlilMvLDatk~-e~qr~~le~ELe~vG 167 (364)
T KOG1486 121 EGASQGKGRGRQVIAVARTADLILMVLDATKS-EDQREILEKELEAVG 167 (364)
T ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEECCCCC-HHHHHHHHHHHHHHC
T ss_conf 02113788772688874036589999517761-567899999999741
No 408
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.61 E-value=0.33 Score=26.52 Aligned_cols=115 Identities=21% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 2799986878897789999999808732-142201-79561378088987085376407999960777871389998179
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
..++|+|..++|||||+..|+ |... ..|++. +|.-..++...+..+.|..-..-..+ +.+. -.-|++
T Consensus 29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l-f~~t----i~eNiL--- 97 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL-FSGS----IAENIL--- 97 (173)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEE-CCCC----HHHHCC---
T ss_conf 999999999980999999996---66667999899999993328998984208999088836-7775----899767---
Q ss_pred CCCCCHHHHHHHH----HHHCEEEEEEE-CCCCCCHHHHHHHHHHHHC---CCCEEEEEC
Q ss_conf 8755289999999----86045699995-5888883479999999873---997899981
Q gi|254780264|r 89 GHVDFTMEVERSI----RVTDGAIALLD-SNAGVEPQTETVWRQADKY---SVPRVIFCN 140 (701)
Q Consensus 89 GH~DF~~Ev~~aL----~~~DgailvVD-a~eGv~~qT~~vlr~~~~~---~lp~ilvIN 140 (701)
..+|-.|-. -+.+.-|++.| +..++-+.|+..+.++.+. +=+.+++|.
T Consensus 98 ----SGGQkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vt 153 (173)
T cd03246 98 ----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred ----CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf ----69999999999998279999999687668998999999999997864898999984
No 409
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=94.53 E-value=0.25 Score=27.24 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=50.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCC
Q ss_conf 389998179875528999999986045699995588888347999999987399789-99817676587
Q gi|254780264|r 80 KKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRV-IFCNKMDKMGA 147 (701)
Q Consensus 80 ~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~i-lvINKiDr~~~ 147 (701)
|=+=+||||= +...=+..--.+.||++|||++|-|==...-++.-+|+.+-|-+++ +|+||+|---.
T Consensus 131 fD~iiiDTPP-ig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~KAK~~LEq~G~~~LGvvLNK~d~s~~ 198 (207)
T TIGR01007 131 FDYIIIDTPP-IGTVIDAAIIARAVDASILVTDAGKIKKREVKKAKEQLEQAGSKFLGVVLNKVDISVD 198 (207)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 8889995188-6667889999987297798872253264678999999986178411588888257655
No 410
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.53 E-value=0.055 Score=31.50 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC------EECCCHHHHHHH-CCCEEEEEEEEEEC
Q ss_conf 99986878897789999999808732142201795------613780889870-85376407999960
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS------ATMDWMEQEQER-GITITSASTTVFWP 73 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~------~~~D~~~~E~eR-gITi~ss~~sl~~~ 73 (701)
.+|.|.-+|||+||+..|- |--+ =+|..|+ =.++-.++||+| || -++|-||
T Consensus 29 HAiMGPNGsGKSTL~~~ia---Ghp~--y~vt~G~I~f~G~Dll~l~~~ERAR~Gl-----FLaFQ~P 86 (248)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIA---GHPK--YEVTSGTILFKGQDLLELEPDERARAGL-----FLAFQYP 86 (248)
T ss_pred EEEECCCCCCHHHHHHHHH---CCCC--EEEEEEEEEECCEECCCCCHHHHHCCCC-----EECCCCC
T ss_conf 9986889984788877761---7993--3784208987765200189655640565-----1015888
No 411
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.51 E-value=0.34 Score=26.37 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECCCCEECCCHHHHHHHCCCEE
Q ss_conf 2799986878897789999999808732-14220179561378088987085376
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHDGSATMDWMEQEQERGITIT 64 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~g~~~~D~~~~E~eRgITi~ 64 (701)
.-++|+|..++|||||...|+ |... ..|++.=...-....+.+..+.|+.-
T Consensus 29 e~~aivG~sGsGKSTLl~~l~---G~~~p~~G~i~i~g~~i~~~~~~~~~~i~~v 80 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEECCCCCHHHHHHHHHH---HCCCCCCCEEEECCEEHHHHHHHHHHHEEEE
T ss_conf 999999999875999999998---6176678869999998899789999720898
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.46 E-value=0.35 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=22.9
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 252799986878897789999999808
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAG 35 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g 35 (701)
.-+|+-+.|+.+.|||+|+.++....+
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998089989999886599999999712
No 413
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=94.35 E-value=0.037 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=8.1
Q ss_pred ECCCCC-CCCCCCEEEE
Q ss_conf 002345-5566530244
Q gi|254780264|r 167 IQLPVG-SESNFQGVID 182 (701)
Q Consensus 167 ~~~p~~-~~~~~~g~id 182 (701)
...|+. .++.|.|.++
T Consensus 79 gELPldflGsRFeGl~P 95 (315)
T TIGR02782 79 GELPLDFLGSRFEGLLP 95 (315)
T ss_pred ECCCCCHHHCCCCCCCC
T ss_conf 10751112011004687
No 414
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.31 E-value=0.38 Score=26.08 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 68788977899999998087321422017956137808898708537640799996077787138999817987552899
Q gi|254780264|r 17 AHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTME 96 (701)
Q Consensus 17 aHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~E 96 (701)
|--+-||||++=.|-+. ..+.|+ .....|.+- |. +. -++=+-+||||.-. ...
T Consensus 7 gKgGvGkt~~~~nLa~~---la~~G~---~vll~D~D~-----g~----an----------~~~D~viiD~~aG~--~~~ 59 (139)
T cd02038 7 GKGGVGKTNISANLALA---LAKLGK---RVLLLDADL-----GL----AN----------LDYDYIIIDTGAGI--SDN 59 (139)
T ss_pred CCCCCCHHHHHHHHHHH---HHHCCC---CEEEEECCC-----CC----CC----------CCCCEEEEECCCCC--CHH
T ss_conf 99998399999999999---997899---699998989-----99----65----------79999999489998--778
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCC--CCCHHHHHHHHCCC
Q ss_conf 99999860456999955888883479999999873--99789998176765--87555566641111
Q gi|254780264|r 97 VERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY--SVPRVIFCNKMDKM--GADFYRSVEMISSR 159 (701)
Q Consensus 97 v~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~--~lp~ilvINKiDr~--~~d~~~~l~~i~~~ 159 (701)
+...+..+|-+++|+-.-.---.-+..+++.+.++ ..++-+++|+..-. .....+.++.+..+
T Consensus 60 ~~~~~~~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~k 126 (139)
T cd02038 60 VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNR 126 (139)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999995895799958970679999999999999639997599995689999999999999999999
No 415
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.30 E-value=0.2 Score=27.90 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCC
Q ss_conf 987300000310100323431000122102488989871786213000122224567521
Q gi|254780264|r 245 RIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEI 304 (701)
Q Consensus 245 ~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 304 (701)
++...++..+..++-+ +. +--++-|=+.||.++..++|.- .|...+....+.
T Consensus 148 ~~~~fL~~aV~~r~Ni-lI--~G~TgSGKTTll~aL~~~ip~~-----eRiitIEDt~EL 199 (332)
T PRK13900 148 KIKEFLEHAVISKKNI-II--SGGTSTGKTTFTNAALREIPAI-----ERLITVEDAREI 199 (332)
T ss_pred HHHHHHHHHHHCCCCE-EE--ECCCCCCHHHHHHHHHHCCCCC-----CCEEEECCCHHH
T ss_conf 7999999998648719-99--8888988999999998358953-----535663140663
No 416
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=94.27 E-value=0.18 Score=28.14 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=18.8
Q ss_pred ECCCCCEECCCCHHHHHHHHHHH
Q ss_conf 23431000122102488989871
Q gi|254780264|r 261 PVLCGSSFKNKGVQPLLDAVVDY 283 (701)
Q Consensus 261 pv~~gsa~~~~Gv~~LLd~i~~~ 283 (701)
-|++.||.++.|++.|++.+-++
T Consensus 137 dV~lvSak~g~gv~~L~~~i~~~ 159 (367)
T PRK13796 137 DVVLISAQKGQGIDELLDAIEKY 159 (367)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 28999465788999999999986
No 417
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.23 E-value=0.032 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99986878897789999999808732
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSH 38 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~ 38 (701)
.||+||.++|||||+-++ +|-++
T Consensus 26 tAlFG~SGsGKTtli~~i---aGL~r 48 (361)
T TIGR02142 26 TALFGRSGSGKTTLIRLI---AGLTR 48 (361)
T ss_pred EEEECCCCCHHHHHHHHH---HHCCC
T ss_conf 871258997078999998---73167
No 418
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.16 E-value=0.41 Score=25.89 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.3
Q ss_pred CCCCCCEEHHH
Q ss_conf 26554111045
Q gi|254780264|r 350 VKGKKERVGRM 360 (701)
Q Consensus 350 ~~~~~~kV~~l 360 (701)
+.|+..+|+++
T Consensus 149 G~GKTTTIaKL 159 (340)
T COG0552 149 GVGKTTTIAKL 159 (340)
T ss_pred CCCHHHHHHHH
T ss_conf 88637179999
No 419
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.02 E-value=0.11 Score=29.58 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=30.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCC
Q ss_conf 27999868788977899999998087321422017-9561378088987085
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGI 61 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgI 61 (701)
--+||+|+.++|||||...|. |.....|++.= |..+.++...+..+.+
T Consensus 24 e~v~iiGpNGaGKSTLlk~i~---Gl~p~~G~I~i~g~~i~~~~~~~~~~~~ 72 (245)
T PRK03695 24 EILHLVGPNGAGKSTLLARMA---GLLSGSGEIQFAGQPLEAWSAAELARHR 72 (245)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEECCEECCCCCHHHHHHCE
T ss_conf 899999789941999999984---6688896599999973538988874306
No 420
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=93.99 E-value=0.04 Score=32.36 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 7999868788977899999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERI 30 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~L 30 (701)
=||+|||.+|||+||...+
T Consensus 13 FisliGHSGCGKSTLLNli 31 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLI 31 (230)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 6998512786178999998
No 421
>KOG0094 consensus
Probab=93.93 E-value=0.45 Score=25.60 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=77.8
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
+.=-+.++|.-.-|||||+-++.|.+-...- +.|. ||..-|. ++++.+ ..+.+.|=||-
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~Y------qATI----------GiDFlsk--t~~l~d---~~vrLQlWDTA 79 (221)
T KOG0094 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTY------QATI----------GIDFLSK--TMYLED---RTVRLQLWDTA 79 (221)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHCCCC------CCEE----------EEEEEEE--EEEECC---CEEEEEEEECC
T ss_conf 0778999866765447888899876304645------6546----------5677788--899738---17899987544
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC----EEEEECCCCC
Q ss_conf 87552899999998604569999558888-83479999999873997----8999817676
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADKYSVP----RVIFCNKMDK 144 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~~~lp----~ilvINKiDr 144 (701)
|---|-.=+-+=.|=++.||+|-|...-- --+|..=+.-+.+++=+ ++||=||-|.
T Consensus 80 GQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094 80 GQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 6787753105550387379999963564017769999999986068886599997163124
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.80 E-value=0.19 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCE
Q ss_conf 8755556664111102683300023455566530
Q gi|254780264|r 146 GADFYRSVEMISSRLGANPLVIQLPVGSESNFQG 179 (701)
Q Consensus 146 ~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g 179 (701)
..+.++.+.-|+..+|.+.+++..-.-....|.|
T Consensus 8 a~s~~ea~~kIr~~lG~~AvIls~r~i~~g~~~~ 41 (407)
T COG1419 8 AESMREAIEKIRKELGEDAVILSNRRIKKGGFLG 41 (407)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCEECCCCEEE
T ss_conf 1689999999999878981885433634782563
No 423
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.75 E-value=0.24 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2799986878897789999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY 32 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~ 32 (701)
.=++|+|--++|||||+++|+.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899996279973428999999
No 424
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.70 E-value=0.077 Score=30.55 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 27999868788977899999998
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYY 33 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~ 33 (701)
|=|+|+|.-++|||||+++|+..
T Consensus 2 kii~ivG~snSGKTTLi~kli~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHH
T ss_conf 29999967999999999999999
No 425
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.63 E-value=0.07 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7999868788977899999998
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYY 33 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~ 33 (701)
=|||+|.-++|||||+++|+..
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~ 25 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPA 25 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999946999999999999999
No 426
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.59 E-value=0.23 Score=27.43 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998687889778999999980
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYA 34 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~ 34 (701)
.=|.|..++|||+|+=.|...+
T Consensus 22 tEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999984999999999998
No 427
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=93.58 E-value=0.11 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCC---CEE--EEEEEEEEEEECHHHHHHHHHHHHHCCEEE
Q ss_conf 67603379999999999998489---889--801789999838577457999997277079
Q gi|254780264|r 580 DSSVLAFEIAARACFREAASKMG---VQL--LEPLMKVEVTVPAEYVGDVIGDLSSRRGQI 635 (701)
Q Consensus 580 ~s~~~~~~~a~~~a~~~a~~~a~---p~L--lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i 635 (701)
+.+..+.=.+-|-|+-.|+++-. |.| =||-=+++-++-.+.+..+-....+.|--+
T Consensus 492 ~G~GLSGGq~QRlALARafl~~~~a~~llLLDEPTAhLD~~tEa~v~~~~~~l~A~grtvl 552 (570)
T TIGR02857 492 GGAGLSGGQAQRLALARAFLRDATAAPLLLLDEPTAHLDAETEAEVLEALRALAAQGRTVL 552 (570)
T ss_pred CCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8884779999999999996061111760354077643218999999999999973798899
No 428
>KOG0074 consensus
Probab=93.51 E-value=0.54 Score=25.13 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=69.9
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
++.+==-+..+|--.+||||+.-.|- + + |-+..-+-.|.+++ ++.|. +++++|+-
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~---s--------E------D~~hltpT~GFn~k----~v~~~----g~f~Lnvw 67 (185)
T KOG0074 13 RTRREIRILLLGLDNAGKTTFLKQLK---S--------E------DPRHLTPTNGFNTK----KVEYD----GTFHLNVW 67 (185)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHC---C--------C------CHHHCCCCCCCCEE----EEEEC----CCEEEEEE
T ss_conf 87464789997227776130888871---3--------7------83331566885247----87624----70788888
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-----HHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 179875528999999986045699995588888-----34799999998739978999817676587
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVE-----PQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~-----~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
|--|.---.+-=+.----.||-|.|||...--- -.--.+++......+|..+|-||-|++-+
T Consensus 68 DiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074 68 DIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ECCCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
T ss_conf 5278665544566555305548999847736768998899999852312200001001225678763
No 429
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.12 Score=29.36 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=35.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 252799986878897789999999808732-142201-79561378088987085376407
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
.=..+||+|..++|||||+..|+ |... ..|++. +|.-..+....+..+.|+.-...
T Consensus 28 ~Ge~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~ 85 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLM---RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQD 85 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCC
T ss_conf 99999999999980999999996---68667873899999995418999996328999038
No 430
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=93.49 E-value=0.36 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=11.6
Q ss_pred EHHHHHCCCCCCCCEEEE
Q ss_conf 000110133456836898
Q gi|254780264|r 331 TFCRIYSGKISKGDSLLN 348 (701)
Q Consensus 331 a~~RV~SGtL~~gd~i~~ 348 (701)
+..|=--+.+-.||.|..
T Consensus 66 C~~R~~~~~lV~GDrV~w 83 (344)
T PRK12288 66 CNIRRTIRSLVTGDRVVW 83 (344)
T ss_pred EEECCCCCCCCCCCEEEE
T ss_conf 872573787742888999
No 431
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.49 E-value=0.22 Score=27.64 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=50.1
Q ss_pred EEECCCCC-CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
Q ss_conf 98179875-5289999999860456999955888883479999999873997899981767658755
Q gi|254780264|r 84 IIDTPGHV-DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADF 149 (701)
Q Consensus 84 lIDTPGH~-DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~ 149 (701)
+-+-|||. ++.-++..-+..+|.++-|+||..=..++...+-+.+.. -+.++++||.|......
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPKEV 78 (322)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCC--CCCEEEEEHHHCCCHHH
T ss_conf 255677519999999875366765899743126888887306788557--88359985132489999
No 432
>KOG0095 consensus
Probab=93.49 E-value=0.54 Score=25.11 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=80.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEE-CCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 5279998687889778999999980873214220179561-378088987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSAT-MDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~-~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
.=-|.++|..+-|||.|+.++- -|.. -+|. |.|. .|+| ||+ .... +..-++.+-||-
T Consensus 7 lfkivlvgnagvgktclvrrft--qglf-ppgq---gatigvdfm---------ikt----vev~---gekiklqiwdta 64 (213)
T KOG0095 7 LFKIVLVGNAGVGKTCLVRRFT--QGLF-PPGQ---GATIGVDFM---------IKT----VEVN---GEKIKLQIWDTA 64 (213)
T ss_pred EEEEEEECCCCCCCCHHHHHHH--CCCC-CCCC---CCEEEEEEE---------EEE----EEEC---CEEEEEEEEECC
T ss_conf 6789997357767330044552--2678-9998---766423379---------999----9987---808999984132
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCC----CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 87552899999998604569999558888----8347999999987399789998176765875555666411110
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGV----EPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv----~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
|.--|.+=+.+--|-+..-|+|-|..--. .|.-..-+++-...++-.|||=||+|+.. -+++.+.+-..|
T Consensus 65 gqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeef 138 (213)
T KOG0095 65 GQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEF 138 (213)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH--HHHHHHHHHHHH
T ss_conf 56888888998864116489998534574310139999999998506427876146656123--333058887888
No 433
>KOG0072 consensus
Probab=93.43 E-value=0.17 Score=28.38 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
.+-|+|-.++||||..=+| +.|++... .=||--++.++.| ++.++++=|--|--
T Consensus 20 rililgldGaGkttIlyrl--------qvgevvtt-------------kPtigfnve~v~y-----KNLk~~vwdLggqt 73 (182)
T KOG0072 20 RILILGLDGAGKTTILYRL--------QVGEVVTT-------------KPTIGFNVETVPY-----KNLKFQVWDLGGQT 73 (182)
T ss_pred EEEEEECCCCCEEEEEEEC--------CCCCCCCC-------------CCCCCCCCCCCCC-----CCCCCEEEECCCCC
T ss_conf 7898503677706999871--------25864345-------------8998868021553-----66551246715864
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-----HHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 528999999986045699995588888347-----9999999873997899981767658
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-----ETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-----~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
--..-=..=-.-.|..|-|||...-=+..+ ...++.-.-.+-..++|.||+|-.+
T Consensus 74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072 74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCHH
T ss_conf 332778887606662899971654344314689999985548654846999860455213
No 434
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.41 E-value=0.14 Score=28.96 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=52.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH-HHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 527999868788977899999998087321422017956137808-8987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-QEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~-~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-|||.++|.-++||||+.-.|-..- +..+.|.+. .|+.-|.||.- +.+.=
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L-----------~~~fiD~D~~Ie~~~g~si~~------------------if~~~ 54 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRL-----------GYEFIDTDHLIEARAGKSIPE------------------IFEEE 54 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-----------CCCCCCCCHHHHHHHCCCHHH------------------HHHHH
T ss_conf 9808988899999899999999995-----------969023988999761699999------------------99985
Q ss_pred CCCCC---HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87552---8999999986045699995588888347999999987399789998
Q gi|254780264|r 89 GHVDF---TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFC 139 (701)
Q Consensus 89 GH~DF---~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvI 139 (701)
|-.-| -.++...+...+.+ ||...-|+ +.....++.+.+.+ .++++
T Consensus 55 Ge~~FR~~E~~~l~~l~~~~~~--VIstGGG~-v~~~~~~~~L~~~g--~vV~L 103 (175)
T PRK00131 55 GEAGFRELEEEVLAELLQRHNL--VISTGGGA-VLREENRALLRERG--TVVYL 103 (175)
T ss_pred CHHHHHHHHHHHHHHHCCCCCE--EEECCCCC-CCCHHHHHHHHCCC--CEEEE
T ss_conf 8899999999999965147985--99748982-26889999998169--37998
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.39 E-value=0.56 Score=25.01 Aligned_cols=128 Identities=17% Similarity=0.185 Sum_probs=56.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCEECCCCEECCCHH---HHHHHCCCEEEEEEEEEE-CCC--------
Q ss_conf 2527999868788977899999998087-321422017956137808---898708537640799996-077--------
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGK-SHKIGEVHDGSATMDWME---QEQERGITITSASTTVFW-PGR-------- 75 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~-i~~~g~v~~g~~~~D~~~---~E~eRgITi~ss~~sl~~-~~~-------- 75 (701)
..+.|.++|--++||||.+-.|-++-.. -.+.+ --.+|+.- .||-+...=+. .+.+.. .+.
T Consensus 74 ~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~-----lia~DtyR~aA~eQLk~~a~~l-~v~~~~~~~~~~~~~~~~ 147 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-----FITTDHSRIGTVQQLQDYVKTI-GFEVIAVRDEAAMTRALT 147 (270)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-----EEEECCCCHHHHHHHHHHHHHH-CCCEECCCCHHHHHHHHH
T ss_conf 9818999888989889999999999986799089-----9983888888999999999981-995354588789999999
Q ss_pred ---CCCCEEEEEEECCCCC----CCHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf ---7871389998179875----528999999986--0456999955888883479999999873997-89998176765
Q gi|254780264|r 76 ---DGGQKKLTIIDTPGHV----DFTMEVERSIRV--TDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKM 145 (701)
Q Consensus 76 ---~~~~~~iNlIDTPGH~----DF~~Ev~~aL~~--~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~ 145 (701)
+...+-+-||||.|.. +...|....+.. -|-.++|+||.-|-+... .+.+. .+. ++ -=++++|+|-.
T Consensus 148 ~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~-~~~~~-f~~-~~i~gvIlTKlD~t 224 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI-EIITN-FKD-IHIDGIVFTKFDET 224 (270)
T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH-HHHHH-HCC-CCCCEEEEECCCCC
T ss_conf 9999769999999799987146999999999860638987999986877769999-99998-077-99988999653589
No 436
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=0.32 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHCCCCCCCCCEECC
Q ss_conf 875555666411110268330002
Q gi|254780264|r 146 GADFYRSVEMISSRLGANPLVIQL 169 (701)
Q Consensus 146 ~~d~~~~l~~i~~~l~~~~~~~~~ 169 (701)
..+.++.+..++..||.+.++++.
T Consensus 8 a~sm~EAl~~vk~eLG~DAVILss 31 (432)
T PRK12724 8 GKSYQDCLMEMKMKYGSEATVISQ 31 (432)
T ss_pred ECCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 099999999999997899299854
No 437
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.38 E-value=0.52 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCE--EEEEEEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 99999999848988--980178999983857745799999727
Q gi|254780264|r 591 RACFREAASKMGVQ--LLEPLMKVEVTVPAEYVGDVIGDLSSR 631 (701)
Q Consensus 591 ~~a~~~a~~~a~p~--LlEPi~~~eI~~p~~~~g~v~~~L~~R 631 (701)
|.++..|+.+-.+. |=||--.++ .+.-..++..|.+.
T Consensus 609 ri~lARAl~~~p~ililDE~ts~LD----~~~e~~i~~~l~~~ 647 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMD----NRSEERFKDRLKRW 647 (694)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC----HHHHHHHHHHHHHH
T ss_conf 9999999957999899978756889----99999999999986
No 438
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.22 E-value=0.19 Score=28.01 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECC----CCCCHHHHHHHHHHHHCC----CCEEEEECCCCCCCCCHH
Q ss_conf 138999817987552899999998604569999558----888834799999998739----978999817676587555
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSN----AGVEPQTETVWRQADKYS----VPRVIFCNKMDKMGADFY 150 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~----eGv~~qT~~vlr~~~~~~----lp~ilvINKiDr~~~d~~ 150 (701)
+|-+-+||||++..| .+..+|.++|..++-+-+- +|+. +....+....+.+ ....+++|+.|.-.....
T Consensus 119 ~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (259)
T COG1192 119 DYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDLEGLE-QLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD 195 (259)
T ss_pred CCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 999899899986167--779999982755670475086898899-99999999998524532325674353474201578
Q ss_pred HHHHHHCCCCC
Q ss_conf 56664111102
Q gi|254780264|r 151 RSVEMISSRLG 161 (701)
Q Consensus 151 ~~l~~i~~~l~ 161 (701)
..++.+.+.++
T Consensus 196 ~~~~~~~~~~~ 206 (259)
T COG1192 196 EVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHCC
T ss_conf 99999997514
No 439
>CHL00175 minD septum-site determining protein; Validated
Probab=93.21 E-value=0.22 Score=27.55 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC--HHHHHH
Q ss_conf 713899981798755289999999860456999955888883479999999873997-89998176765875--555666
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP-RVIFCNKMDKMGAD--FYRSVE 154 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp-~ilvINKiDr~~~d--~~~~l~ 154 (701)
.+|-+-+||||...+ ..+..+|.++|.+|+|+-.-.=-..-+++++..+.+.+++ +=+++|++...... -.....
T Consensus 123 ~~yDyiiID~ppgl~--~~~~~al~aad~viIvttpe~~al~da~~~i~~~~~~~~~~~~lvvN~~~~~~~~~~~~~~~~ 200 (279)
T CHL00175 123 RNYDYILIDCPAGID--VGFINAIAPAKEAIVVTTPEITAIRDADRVAGLLEANGIYNIKLLVNRVRPDMIKANDMMSVR 200 (279)
T ss_pred CCCCEEEECCCCCCC--HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 799999981899888--999999997890699789978999999999999997599862135335645543545534499
Q ss_pred HHCCCCCC
Q ss_conf 41111026
Q gi|254780264|r 155 MISSRLGA 162 (701)
Q Consensus 155 ~i~~~l~~ 162 (701)
.+...++.
T Consensus 201 ~~~~~l~v 208 (279)
T CHL00175 201 DVQEMLGI 208 (279)
T ss_pred HHHHHHCC
T ss_conf 99997199
No 440
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.11 E-value=0.17 Score=28.41 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=27.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCC---CCEECC-CCEECCCHHHHHHHCCC
Q ss_conf 27999868788977899999998087321---422017-95613780889870853
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHK---IGEVHD-GSATMDWMEQEQERGIT 62 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~---~g~v~~-g~~~~D~~~~E~eRgIT 62 (701)
--+||+|+.++|||||...| +|...- -|++.- |...++..+. +|+|.
T Consensus 32 E~~~llGpSG~GKTTlLr~i---aGL~~p~~~~G~I~~~g~~v~~~~~~--~R~ig 82 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAI---AGFVKAAGLTGRIAIADRDLTHAPPH--KRGLA 82 (362)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCCCEEEEECCEECCCCCHH--HCCEE
T ss_conf 89999999974599999999---77767778817999999999989988--89948
No 441
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.04 E-value=0.17 Score=28.37 Aligned_cols=48 Identities=29% Similarity=0.375 Sum_probs=30.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCC
Q ss_conf 2799986878897789999999808732-142201-79561378088987085
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGI 61 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgI 61 (701)
..+||+|+.++|||||...|. |.+. ..|++. +|....++.+.|+.|.+
T Consensus 29 ei~~liGpNGaGKSTLlk~i~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 78 (257)
T PRK13548 29 EVVAILGPNGAGKSTLLRALS---GELPPSSGEVRLFGRPLADWSPAELARRR 78 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEEECEECCCCCHHHHHHHE
T ss_conf 899999999987999999985---67577875699936576758999997546
No 442
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.02 E-value=0.28 Score=26.98 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=65.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEE--CCC----CCCCEEE
Q ss_conf 2799986878897789999999808732-142201-7956137808898708537640799996--077----7871389
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSASTTVFW--PGR----DGGQKKL 82 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~--~~~----~~~~~~i 82 (701)
--+||+|+-++|||||.-+|. |... +.|.|. +|....++-.-|..|.|..-.......+ .-. -+..-..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~---~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLA---GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCC
T ss_conf 799998998889999999986---56788887799999724546988875618993567889999587361742677465
Q ss_pred EEEECCCCCCCHHHHHHHHH---HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 99817987552899999998---604569999558888834799999998739978999817676587
Q gi|254780264|r 83 TIIDTPGHVDFTMEVERSIR---VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 83 NlIDTPGH~DF~~Ev~~aL~---~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
+...+|+--|-. .|..+|. +.+-|-=.++.-.|=+-| +..+..|...+-+.++. |.+-.
T Consensus 106 ~~~~~~~~~D~~-~v~~aL~~~~~~~la~r~~~~LSGGerQ-rv~iAraLaQ~~~iLLL----DEPTs 167 (258)
T COG1120 106 GLFGRPSKEDEE-IVEEALELLGLEHLADRPVDELSGGERQ-RVLIARALAQETPILLL----DEPTS 167 (258)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHCCHHHHCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEE----CCCCC
T ss_conf 533578876899-9999999829477766855116866889-99999998458997882----79720
No 443
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=93.00 E-value=0.09 Score=30.09 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=64.5
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEE----------EE---
Q ss_conf 71025279998687889778999999980873214220179561378088987085376407999----------96---
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV----------FW--- 72 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl----------~~--- 72 (701)
+-+.+--+=+++.+++|||||+|.++..-+.-.+.+ |=.|.-.++. +.+|=|..=+++-+++. ..
T Consensus 30 ~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~A-vi~GD~~t~~-DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~ 107 (225)
T TIGR00073 30 DKEGLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIA-VIEGDVQTKN-DADRLRKYGVPAIQINTGKECHLDAHMVAGAI 107 (225)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE-EEECCHHHHH-HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 865978998025886115899999999845789789-9975532255-69999864986886368864440166786587
Q ss_pred -----CCCCCC-CEEE-----EEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC---CCHHHHHHHHHHHHCCCCEEEE
Q ss_conf -----077787-1389-----9981798755289999999860456999955888---8834799999998739978999
Q gi|254780264|r 73 -----PGRDGG-QKKL-----TIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG---VEPQTETVWRQADKYSVPRVIF 138 (701)
Q Consensus 73 -----~~~~~~-~~~i-----NlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG---v~~qT~~vlr~~~~~~lp~ilv 138 (701)
.+.+.. +.+| ||| ||--.|. -.. -=|+|+++.|| +.-+ -.+++.| =+++
T Consensus 108 ~~L~~~~ld~~~DlL~IENVGNLv-CP~~FdL----Ge~-----~rVvllSVTEGdDk~lKy-P~~F~~A------d~~~ 170 (225)
T TIGR00073 108 HALKDLPLDDISDLLLIENVGNLV-CPADFDL----GEH-----MRVVLLSVTEGDDKVLKY-PAMFKEA------DLIL 170 (225)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCE-ECCCCCC----CCC-----CEEEEEEECCCCCCCCCC-CHHHHHH------HHHH
T ss_conf 554216888714626886447610-0673112----356-----307999865899965466-1588744------4562
Q ss_pred ECCCCC
Q ss_conf 817676
Q gi|254780264|r 139 CNKMDK 144 (701)
Q Consensus 139 INKiDr 144 (701)
|||.|-
T Consensus 171 inK~DL 176 (225)
T TIGR00073 171 INKVDL 176 (225)
T ss_pred HCHHHH
T ss_conf 147889
No 444
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.99 E-value=0.2 Score=27.83 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
-++|+|+-++|||||+-.|.
T Consensus 38 ~vaivG~nGsGKSTLlk~l~ 57 (273)
T PRK13632 38 YVAILGHNGSGKSTISKILT 57 (273)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999986999999997
No 445
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.65 Score=24.59 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2799986878897789999999808732
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH 38 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~ 38 (701)
.-++++|+-++|||||...|. |.+.
T Consensus 27 ei~gl~G~NGaGKSTLl~~i~---Gl~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIIL---GLLK 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCC
T ss_conf 399998789979999999997---6857
No 446
>COG1162 Predicted GTPases [General function prediction only]
Probab=92.93 E-value=0.4 Score=25.98 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 256778999997188
Q gi|254780264|r 544 PGVRKGIESMLSSGP 558 (701)
Q Consensus 544 ~~v~~g~~~a~~~Gp 558 (701)
+.+..+|.+...--+
T Consensus 237 e~l~~~F~ef~~~~~ 251 (301)
T COG1162 237 EDLVQAFPEFAELAR 251 (301)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999997699998726
No 447
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.15 Score=28.76 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCE
Q ss_conf 0252799986878897789999999808732-142201-7956137808898708537
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITI 63 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi 63 (701)
+.=..+||+|+-++|||||.-.|. |... ..|++. +|.....+...|..|.|.+
T Consensus 31 ~~Ge~~~iiGpNGaGKSTLlk~i~---Gll~p~~G~I~l~g~~i~~~~~~~~~~~ig~ 85 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLS---RLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEEECCEECCCCCHHHHHHHEEE
T ss_conf 599799999998839999999997---4988885299999999574897898765557
No 448
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=92.88 E-value=0.29 Score=26.86 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 10248898987178
Q gi|254780264|r 272 GVQPLLDAVVDYLP 285 (701)
Q Consensus 272 Gv~~LLd~i~~~lP 285 (701)
|=+.+|.++..++|
T Consensus 151 GKTT~l~all~~i~ 164 (283)
T pfam00437 151 GKTTLLYALLNEIN 164 (283)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 88999999998408
No 449
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.22 Score=27.60 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=27.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCC
Q ss_conf 2799986878897789999999808732-142201-79561378088987085
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGI 61 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgI 61 (701)
.-+||+|+.++|||||+-.|. |.+. ..|++. +|.-..+....+..|.|
T Consensus 34 E~vaivG~nGsGKSTL~k~l~---Gl~~p~~G~I~i~G~~i~~~~~~~lr~~i 83 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLN---GLLLPEAGTITVGGMVLSEETVWDVRKQI 83 (279)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHE
T ss_conf 899999999965999999997---28888896499999999857879997436
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.79 E-value=0.68 Score=24.45 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=72.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCEECCCCEECCC-HH--HHHHHCCCEEEEEEEEEECCCC----------
Q ss_conf 27999868788977899999998-0873214220179561378-08--8987085376407999960777----------
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYY-AGKSHKIGEVHDGSATMDW-ME--QEQERGITITSASTTVFWPGRD---------- 76 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~-~g~i~~~g~v~~g~~~~D~-~~--~E~eRgITi~ss~~sl~~~~~~---------- 76 (701)
-.|-.+|==++||||.+-.|-.+ ...-.+.+-|. +|. +| .||-+...-+..+ .++-.+..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa-----aD~~RpAA~eQL~~La~q~~v-~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA-----ADTYRPAAIEQLKQLAEQVGV-PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCHHHHHHHHHHHHHCCC-CEECCCCCCCHHHHHHHH
T ss_conf 58999815679748689999999997499458985-----056786899999999986098-531677889979999999
Q ss_pred -----CCCEEEEEEECCCCCC----CHHHHHHHH--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCC
Q ss_conf -----8713899981798755----289999999--8604569999558888834799999998739978-999817676
Q gi|254780264|r 77 -----GGQKKLTIIDTPGHVD----FTMEVERSI--RVTDGAIALLDSNAGVEPQTETVWRQADKYSVPR-VIFCNKMDK 144 (701)
Q Consensus 77 -----~~~~~iNlIDTPGH~D----F~~Ev~~aL--~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~-ilvINKiDr 144 (701)
...|-+-+|||-|..- ...|...-- ---|-.++||||.-| |.-.-.-+++.+.+++ =++|+|+|-
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999997499889996887330309999999999855398748998764445---67899999986626986499971467
Q ss_pred C
Q ss_conf 5
Q gi|254780264|r 145 M 145 (701)
Q Consensus 145 ~ 145 (701)
.
T Consensus 252 d 252 (451)
T COG0541 252 D 252 (451)
T ss_pred C
T ss_conf 8
No 451
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.78 E-value=0.16 Score=28.48 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=30.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEE
Q ss_conf 2799986878897789999999808732-142201-7956137808898708537640
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSA 66 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss 66 (701)
-.+||+|..++|||||+..|+- ... ..|++. +|.-..+....+-.+.|++-..
T Consensus 30 ~~iaIvG~sGsGKSTLl~ll~g---l~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q 84 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLER---FYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84 (238)
T ss_pred CEEEEECCCCCCHHHHHHHHHH---CCCCCCCEEEECCEECCCCCHHHHHHCEEEECC
T ss_conf 9999999999989999999823---861885189999999231899999740699915
No 452
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.73 E-value=0.19 Score=28.03 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=60.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH-HHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 527999868788977899999998087321422017956137808-8987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-QEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~-~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
-|||.+||.-++||||+.-.|-..-| ..+.|.+. .|+.-|+||.- .+ ..=
T Consensus 4 kknI~LiG~mGsGKstvgk~LA~~l~-----------~~fiD~D~~Ie~~~g~si~~-----If-------------~~~ 54 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----------MEFYDSDQEIEKRTGADIGW-----VF-------------DVE 54 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC-----------CCEEECHHHHHHHHCCCHHH-----HH-------------HHH
T ss_conf 88289889999988999999999969-----------99687809999997989999-----99-------------997
Q ss_pred CCC---CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC
Q ss_conf 875---528999999986045699995588888347999999987399789998176765875555666411
Q gi|254780264|r 89 GHV---DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMIS 157 (701)
Q Consensus 89 GH~---DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~ 157 (701)
|-. +.-.++...|.-.++ .||...-|+-.. +..++.+.+.+ .+++++ +++...++.+.
T Consensus 55 Ge~~FR~~E~~~l~~l~~~~~--~VIstGGG~v~~-~~~~~~L~~~g--~vv~L~------~~~~~~~~R~~ 115 (172)
T PRK05057 55 GEEGFRDREEKVINELTEKQG--IVLATGGGSVKS-RETRNRLSARG--VVVYLE------TTIEKQLARTQ 115 (172)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCC-HHHHHHHHHCC--EEEEEE------CCHHHHHHHHC
T ss_conf 499999999999998854799--799789853588-99999999669--589995------99899999805
No 453
>COG1161 Predicted GTPases [General function prediction only]
Probab=92.72 E-value=0.14 Score=28.96 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99986878897789999999
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILY 32 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~ 32 (701)
+.|+|-.-.||+||+-+|+-
T Consensus 135 v~vvG~PNVGKSslIN~L~~ 154 (322)
T COG1161 135 VGVVGYPNVGKSTLINRLLG 154 (322)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99987897648999999862
No 454
>KOG0780 consensus
Probab=92.60 E-value=0.72 Score=24.29 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=64.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCCCCCEECCCCEE----CCCHHHHHHHCCCEEEEEEEEEECCC-----------
Q ss_conf 799986878897789999999808-73214220179561----37808898708537640799996077-----------
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAG-KSHKIGEVHDGSAT----MDWMEQEQERGITITSASTTVFWPGR----------- 75 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g-~i~~~g~v~~g~~~----~D~~~~E~eRgITi~ss~~sl~~~~~----------- 75 (701)
=|-++|--++||||.+-.|.++-. .-.+.+-|. +.|+ .|-+++--+| +-++++-.+.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc-aDTFRagAfDQLkqnA~k------~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC-ADTFRAGAFDQLKQNATK------ARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred EEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEE-ECCCCCCHHHHHHHHHHH------HCCEEEECCCCCCHHHHHHHH
T ss_conf 8999830578863008999999984687245776-022453068999987674------077068403665558999999
Q ss_pred ----CCCCEEEEEEECCCCCCCH----HHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCC
Q ss_conf ----7871389998179875528----999999986--04569999558888834799999998739978-999817676
Q gi|254780264|r 76 ----DGGQKKLTIIDTPGHVDFT----MEVERSIRV--TDGAIALLDSNAGVEPQTETVWRQADKYSVPR-VIFCNKMDK 144 (701)
Q Consensus 76 ----~~~~~~iNlIDTPGH~DF~----~Ev~~aL~~--~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~-ilvINKiDr 144 (701)
...++-+-++||-|.--=- .|+...-.+ -|-.|+|+||.-|-.+ .-.-.++++.+-+ -+.|+|+|-
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa---e~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA---EAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998886397289982787301248999999999851598738999856200767---99999887761540379972256
Q ss_pred C
Q ss_conf 5
Q gi|254780264|r 145 M 145 (701)
Q Consensus 145 ~ 145 (701)
-
T Consensus 253 h 253 (483)
T KOG0780 253 H 253 (483)
T ss_pred C
T ss_conf 7
No 455
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.55 E-value=0.12 Score=29.40 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=7.6
Q ss_pred CCCEEHHHHHCCCCCCC
Q ss_conf 67100001101334568
Q gi|254780264|r 327 VGSLTFCRIYSGKISKG 343 (701)
Q Consensus 327 ~G~~a~~RV~SGtL~~g 343 (701)
.|+-++.|+.||.+.+.
T Consensus 64 aGKSTLlkliaGi~~Pt 80 (249)
T COG1134 64 AGKSTLLKLIAGIYKPT 80 (249)
T ss_pred CCHHHHHHHHHCCCCCC
T ss_conf 85899999995871798
No 456
>pfam06858 NOG1 Nucleolar GTP-binding protein 1 (NOG1). This family represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). In S. cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. Family members include eukaryotic, bacterial and archaeal proteins.
Probab=92.54 E-value=0.31 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=31.9
Q ss_pred HHHHHHH-HHCEEEEEEECCCC----CCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 9999998-60456999955888----883479999999873--997899981767
Q gi|254780264|r 96 EVERSIR-VTDGAIALLDSNAG----VEPQTETVWRQADKY--SVPRVIFCNKMD 143 (701)
Q Consensus 96 Ev~~aL~-~~DgailvVDa~eG----v~~qT~~vlr~~~~~--~lp~ilvINKiD 143 (701)
...+||+ +.|..+.++|..|- +..| ..+++..... +.|.+.|+||+|
T Consensus 5 qAI~AL~hL~~~vlf~~D~Se~cgysie~Q-~~L~~eik~~f~~~p~i~V~nK~D 58 (58)
T pfam06858 5 QAITALAHLRAAVLFVFDPSEQCGYSLEEQ-LHLFKEIKPLFKNKPVIVVLNKID 58 (58)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCHHHH-HHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 999999836770899981897669899999-999999998749981899972679
No 457
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.54 E-value=0.16 Score=28.58 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECC-CCEECCCHHHHHHHCC
Q ss_conf 2799986878897789999999808732-1422017-9561378088987085
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHD-GSATMDWMEQEQERGI 61 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~-g~~~~D~~~~E~eRgI 61 (701)
.-+||+|+-++|||||..+|. |.+. ..|++.= |....++...|..|.|
T Consensus 29 ei~~liGpNGaGKSTLlk~i~---Gl~~p~sG~I~i~g~~i~~~~~~~~~~~i 78 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFA---RLLTPQSGTVFLGDKPISMLSARQLARRL 78 (255)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHE
T ss_conf 799999999981999999997---59888864899999983629989985118
No 458
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.53 E-value=0.11 Score=29.48 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=30.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCEEC-CCCEECCCHHHHHHHCCCEE
Q ss_conf 27999868788977899999998087321-42201-79561378088987085376
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHK-IGEVH-DGSATMDWMEQEQERGITIT 64 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~-~g~v~-~g~~~~D~~~~E~eRgITi~ 64 (701)
--+||+|+.++|||||.-.|. |...- .|++. +|....+..+.|..|.|.+-
T Consensus 28 e~~~ilGpSG~GKSTllr~i~---gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~v 80 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMIN---RLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEEECCEECCCCCHHHHHCCCEEE
T ss_conf 899999999956999999997---59999815999999999999978973886799
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.47 E-value=0.16 Score=28.53 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred HHHEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 102527999868788977899999998
Q gi|254780264|r 7 IEDSRNFGIMAHIDAGKTTTTERILYY 33 (701)
Q Consensus 7 ~e~iRNv~iiaHvd~GKTTL~d~LL~~ 33 (701)
.+.-+||.|.|..++|||||.-+|+.+
T Consensus 22 v~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 985998999899999899999999961
No 460
>KOG1534 consensus
Probab=92.45 E-value=0.33 Score=26.46 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=67.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC---------CCEECCCHHH-----HHHHCCCEEEEEE----------
Q ss_conf 999868788977899999998087321422017---------9561378088-----9870853764079----------
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD---------GSATMDWMEQ-----EQERGITITSAST---------- 68 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~---------g~~~~D~~~~-----E~eRgITi~ss~~---------- 68 (701)
.-++|..++||+|.+-.|..+...+.|.-.+-. -....|-++. =.|- .-.--+..
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEd-l~~GPNGgLv~cmEyl~~ 84 (273)
T KOG1534 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMED-LDLGPNGGLVYCMEYLLE 84 (273)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHCCHHHHHHH-HCCCCCCCCHHHHHHHHH
T ss_conf 8987467888430789999999862854588626878886089620028875218888888-634998652038999997
Q ss_pred EEEECCCC----CCCEEEEEEECCC------CCCCHHHHHHHHHHHC---EEEEEEECCCCCCH-----HHHHHHHHHHH
Q ss_conf 99960777----8713899981798------7552899999998604---56999955888883-----47999999987
Q gi|254780264|r 69 TVFWPGRD----GGQKKLTIIDTPG------HVDFTMEVERSIRVTD---GAIALLDSNAGVEP-----QTETVWRQADK 130 (701)
Q Consensus 69 sl~~~~~~----~~~~~iNlIDTPG------H~DF~~Ev~~aL~~~D---gailvVDa~eGv~~-----qT~~vlr~~~~ 130 (701)
.+.|.+.. .++| -+.|||| |++-.....+.|..-+ +++.++|+.==|.+ ..-..+-....
T Consensus 85 NldwL~~~~Gd~eddy--lifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~ 162 (273)
T KOG1534 85 NLDWLEEEIGDVEDDY--LIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS 162 (273)
T ss_pred HHHHHHHHCCCCCCCE--EEEECCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7888775406756777--99847981677544765899999984026744699996050111178899999999999997
Q ss_pred CCCCEEEEECCCCCCCC
Q ss_conf 39978999817676587
Q gi|254780264|r 131 YSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 131 ~~lp~ilvINKiDr~~~ 147 (701)
..+|.|=++.|||.+-.
T Consensus 163 lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534 163 LEVPHINVLSKMDLLKD 179 (273)
T ss_pred HCCCCHHHHHHHHHHHH
T ss_conf 36760224468788645
No 461
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.42 E-value=0.29 Score=26.87 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
.-+||+|+-++|||||...|.
T Consensus 29 ei~~llG~NGaGKSTLl~~i~ 49 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 599999899973999999996
No 462
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.41 E-value=0.28 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEE
Q ss_conf 2799986878897789999999808732-14220
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEV 43 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v 43 (701)
.-++|+|+-++|||||.-.| +|.+. ..|++
T Consensus 33 e~~aiiG~NGaGKSTLl~~i---~Gll~p~~G~I 63 (285)
T PRK13636 33 EVTAILGGNGAGKSTLFQNL---NGILKPSSGRI 63 (285)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCCEE
T ss_conf 89999999998099999999---65988886089
No 463
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.35 E-value=0.15 Score=28.72 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=32.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHH
Q ss_conf 2799986878897789999999808732142201795613780889870
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQER 59 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eR 59 (701)
.-|+|-|-+++|||||+++|--.-| ....-+.-+.+.++|..-+..+|
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~-~~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG-FKVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCEEEECCCCCHHHHHHHHHHHH
T ss_conf 0899844644687899999998838-85022224678479999876997
No 464
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.31 E-value=0.2 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECCC
Q ss_conf 2799986878897789999999808732-14220179
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHDG 46 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~g 46 (701)
--+||+||-++|||||+-.| +|.+. ..|+|.-+
T Consensus 33 e~vaiiG~nGsGKSTLl~~l---~Gll~p~~G~V~~~ 66 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHL---NGLLQPTEGKVTVG 66 (288)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCCEEEEC
T ss_conf 89999999994799999999---74888888569999
No 465
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=92.31 E-value=0.13 Score=29.02 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCCEE--EEEEEEEEEEECHHHHHHHH-HHHHHC
Q ss_conf 99999999998489889--80178999983857745799-999727
Q gi|254780264|r 589 AARACFREAASKMGVQL--LEPLMKVEVTVPAEYVGDVI-GDLSSR 631 (701)
Q Consensus 589 a~~~a~~~a~~~a~p~L--lEPi~~~eI~~p~~~~g~v~-~~L~~R 631 (701)
.-|.++--+++.--|.| =||--+++-.+-++.+.... .-.+.|
T Consensus 507 RqRLALARaLl~~ap~llLDEPTehLDa~t~~~ll~dL~t~a~~g~ 552 (566)
T TIGR02868 507 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLTAALSGR 552 (566)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999997379988986088666787679999999850554465
No 466
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.30 E-value=0.25 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
--+||+|+.++|||||...|.
T Consensus 27 ei~~iiGpnGaGKSTl~~~i~ 47 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999999973999999997
No 467
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.29 E-value=0.23 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
--+||+|+.++|||||...|.
T Consensus 31 e~~~llGpsG~GKTTllr~ia 51 (358)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVA 51 (358)
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999998636999999997
No 468
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.28 E-value=0.21 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
-++|+|..++|||||...|.
T Consensus 29 i~~iiG~nGaGKSTLlk~i~ 48 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998899998999999996
No 469
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.28 E-value=0.16 Score=28.47 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC
Q ss_conf 2799986878897789999999808732142201795
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS 47 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~ 47 (701)
.-++|+|..++|||||+-.|+ |.+...|++..|.
T Consensus 34 EilgivGeSGsGKSTl~~~il---gll~~~~~~~~g~ 67 (327)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIM---GLIDYPGRVMAEK 67 (327)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEEE
T ss_conf 999999999878999999997---4889899765427
No 470
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.32 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
--+||+|+-++|||||.-.|.
T Consensus 32 e~~aiiG~NGsGKSTLl~~l~ 52 (273)
T PRK13647 32 SKTAILGPNGAGKSTLLLHLN 52 (273)
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999999975999999996
No 471
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.15 E-value=0.17 Score=28.30 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
--+||+|+.++|||||+-.|.
T Consensus 31 E~vaivG~nGsGKSTL~~~l~ 51 (276)
T PRK13650 31 EWLSIIGHNGSGKSTTVRLID 51 (276)
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999999987999999997
No 472
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=92.15 E-value=0.11 Score=29.49 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99986878897789999999
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILY 32 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~ 32 (701)
++|+|--|+|||||+++|+.
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~ 21 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVK 21 (165)
T ss_pred EEEEEECCCCHHHHHHHHHH
T ss_conf 37896258867899999999
No 473
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=92.13 E-value=0.24 Score=27.35 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=26.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECCCCEECCCHHHHHHHCC
Q ss_conf 2799986878897789999999808732-14220179561378088987085
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHDGSATMDWMEQEQERGI 61 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~g~~~~D~~~~E~eRgI 61 (701)
--+||+|+.++|||||...+ +|... ..|++.=+.+-...++-+ +|+|
T Consensus 31 e~~~llGpSG~GKtTlLr~i---aGl~~p~~G~I~~~g~~v~~~~p~-~R~i 78 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRII---AGLERQTAGTIYQGGRDITRLPPQ-KRDY 78 (353)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCEEEEECCEECCCCCHH-HCCE
T ss_conf 99999999953599999999---769999873999999999999952-5885
No 474
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=92.06 E-value=0.2 Score=27.94 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 252799986878897789999999808732
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSH 38 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~ 38 (701)
.=.-+|++|+.++|||||...|. |.+.
T Consensus 28 ~Gei~~liGpNGaGKSTLl~~i~---Gl~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVV---GIVP 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCC
T ss_conf 99799998899986999999996---7888
No 475
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.01 E-value=0.34 Score=26.40 Aligned_cols=48 Identities=31% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCEEC-CCCEECCCHHHHH-HHCCC
Q ss_conf 7999868788977899999998087321-42201-7956137808898-70853
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHK-IGEVH-DGSATMDWMEQEQ-ERGIT 62 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~-~g~v~-~g~~~~D~~~~E~-eRgIT 62 (701)
-+||+|+.++|||||...|. |.... .|++. +|.......+.++ ++||.
T Consensus 28 i~gliG~nGaGKSTL~~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~ 78 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLIS---GFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCEEEEECCEECCCCCHHHHHHCCCE
T ss_conf 99999899973999999996---7987883189999996688999999975976
No 476
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.96 E-value=0.34 Score=26.42 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=31.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHH-HCCCEE
Q ss_conf 2799986878897789999999808732-142201-79561378088987-085376
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQE-RGITIT 64 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~e-RgITi~ 64 (701)
.-+||+|+-++|||||...|. |.+. ..|++. +|....+..+.|+. +||..-
T Consensus 27 ei~~liGpNGaGKSTL~~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gig~v 80 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLM---GLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEEECCEECCCCCHHHHHHCCEEEE
T ss_conf 799999999940999999997---799999549999999999999899998295993
No 477
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.94 E-value=0.32 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.4
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCEEC
Q ss_conf 2527999868788977899999998087321-42201
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHK-IGEVH 44 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~-~g~v~ 44 (701)
+=.-++|+|.-++|||||...|+ |.+.. .|++.
T Consensus 25 ~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~sG~i~ 58 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILA---GLSPPLAGRVL 58 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEEE
T ss_conf 99599999999999999999996---67788852999
No 478
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=91.91 E-value=0.15 Score=28.62 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=15.5
Q ss_pred EECCCCCCHHHHHHHHHHHC
Q ss_conf 98687889778999999980
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYA 34 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~ 34 (701)
+.||.++|||||. +|||.+
T Consensus 33 LtG~SGAGKttLL-KLl~~~ 51 (215)
T TIGR02673 33 LTGPSGAGKTTLL-KLLYGA 51 (215)
T ss_pred EECCCCCCHHHHH-HHHHHH
T ss_conf 8727786178999-999852
No 479
>pfam09186 DUF1949 Domain of unknown function (DUF1949). Members of this family pertain to a set of functionally uncharacterized hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement.
Probab=91.90 E-value=0.37 Score=26.14 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=49.1
Q ss_pred EEECHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEHHHHCCHHHHHHHHHCC
Q ss_conf 98385774579999972770797453589839999996043733847887863086
Q gi|254780264|r 614 VTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQG 669 (701)
Q Consensus 614 I~~p~~~~g~v~~~L~~Rrg~i~~~~~~~~~~~i~a~iP~~e~~gf~~~LR~~T~G 669 (701)
|.|+.+-+|++-..|.+..+.|.+.+.... +.++-.+|..+.-.|...|+.+|+|
T Consensus 1 l~~dY~~~~~v~~~l~~~~~~i~d~~y~~~-V~l~v~v~~~~~~~~~~~L~~~t~G 55 (55)
T pfam09186 1 LTCDYAQLGKVERLLEQFGAVILDEEYTDK-VTLTLAVPEEEVEAFKAKLTDLTSG 55 (55)
T ss_pred CEECCCCHHHHHHHHHHCCCEEEEEEEEEE-EEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf 964433559999999987988984030015-9999997688899999999986599
No 480
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.88 E-value=0.14 Score=28.87 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 279998687889778999999
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL 31 (701)
-.+||+||-++|||||+.+|.
T Consensus 53 e~vaIIG~nGsGKSTL~~~l~ 73 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 899999499984999999997
No 481
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.86 E-value=0.14 Score=28.95 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
.+||+|+.++|||||+..|+
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~ 84 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999981999999995
No 482
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.85 E-value=0.13 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998687889778999999
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERIL 31 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL 31 (701)
-+||+|+-++|||||...|.
T Consensus 52 ivgllG~NGaGKSTLlk~I~ 71 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999899861999999996
No 483
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.84 E-value=0.35 Score=26.33 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=61.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----HCCCCCCCCEECCCC---EECCCHHH--HHHHCC--CEEEEEEEEEECCCCCCC
Q ss_conf 2799986878897789999999----808732142201795---61378088--987085--376407999960777871
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILY----YAGKSHKIGEVHDGS---ATMDWMEQ--EQERGI--TITSASTTVFWPGRDGGQ 79 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~----~~g~i~~~g~v~~g~---~~~D~~~~--E~eRgI--Ti~ss~~sl~~~~~~~~~ 79 (701)
.=++|+|.-++|||||.-.+|= +.|.+...|..-.+. ...=|.|+ +-.+.. |++=-+. -+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~-------~g~~ 103 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL-------LGRY 103 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH-------CCCC
T ss_conf 689999998888899999996787677426998366633346677699757610267679967999986-------0675
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCEE---EEEEECCCCCCHHHHHHH-HHHHHCCCCEEEEECCCCCCC--------C
Q ss_conf 3899981798755289999999860456---999955888883479999-999873997899981767658--------7
Q gi|254780264|r 80 KKLTIIDTPGHVDFTMEVERSIRVTDGA---IALLDSNAGVEPQTETVW-RQADKYSVPRVIFCNKMDKMG--------A 147 (701)
Q Consensus 80 ~~iNlIDTPGH~DF~~Ev~~aL~~~Dga---ilvVDa~eGv~~qT~~vl-r~~~~~~lp~ilvINKiDr~~--------~ 147 (701)
...++...|+-.| ..+|..||..+.-. ==-|.--.| -|-++++ -.|+..+ |-+++ +|.+- .
T Consensus 104 ~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSG--GQ~QRV~lARAL~~~-p~lll---LDEP~~gvD~~~~~ 176 (254)
T COG1121 104 GKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGELSG--GQKQRVLLARALAQN-PDLLL---LDEPFTGVDVAGQK 176 (254)
T ss_pred CCCCCCCCCCHHH-HHHHHHHHHHCCCHHHHCCCCCCCCC--HHHHHHHHHHHHCCC-CCEEE---ECCCCCCCCHHHHH
T ss_conf 4466013666777-99999999983926664795554672--799999999985369-99899---66875457987899
Q ss_pred CHHHHHHHHCCCCCCCCC
Q ss_conf 555566641111026833
Q gi|254780264|r 148 DFYRSVEMISSRLGANPL 165 (701)
Q Consensus 148 d~~~~l~~i~~~l~~~~~ 165 (701)
+++..+.++++. |..++
T Consensus 177 ~i~~lL~~l~~e-g~tIl 193 (254)
T COG1121 177 EIYDLLKELRQE-GKTVL 193 (254)
T ss_pred HHHHHHHHHHHC-CCEEE
T ss_conf 999999999878-98899
No 484
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=91.80 E-value=0.27 Score=27.07 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=43.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC-CCCCEECCCCEECCCH----------HHHHHHCCCEEEEEEEEEECCCCCCC
Q ss_conf 279998687889778999999980873-2142201795613780----------88987085376407999960777871
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKS-HKIGEVHDGSATMDWM----------EQEQERGITITSASTTVFWPGRDGGQ 79 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i-~~~g~v~~g~~~~D~~----------~~E~eRgITi~ss~~sl~~~~~~~~~ 79 (701)
=|+-|+|--++|||||.-.+++.-|+- +++|...+...+.||. +-+++.|- -+..+.+...+|+.
T Consensus 18 Gnt~~~GTnG~GKTTlLRlIp~FYga~p~rlv~~~~kkSF~~yYlP~~nSyIIYEy~r~~G~----~c~vVl~~k~~gr~ 93 (1192)
T pfam12128 18 GHTNICGTNAAGKTTLQRLIPLFYGEYPSRIVPKTDRKSFEDYYLPRDSSYLIYEYQRPDGQ----LCQVVLSSNGDGRG 93 (1192)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHCCCCCCEEEEEEEECCCCC----EEEEEEEECCCCCC
T ss_conf 87257448888699999899975289755328874423665651799874789999857888----51588788689960
Q ss_pred EEEEEEECCCCCC
Q ss_conf 3899981798755
Q gi|254780264|r 80 KKLTIIDTPGHVD 92 (701)
Q Consensus 80 ~~iNlIDTPGH~D 92 (701)
..+.|||+|=-.+
T Consensus 94 V~yRFId~~y~~~ 106 (1192)
T pfam12128 94 VQYRFIDGGYDSD 106 (1192)
T ss_pred EEEEEECCCCCHH
T ss_conf 3577527865788
No 485
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=91.77 E-value=0.52 Score=25.24 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 7138999817987552899999998604569999558888834799999998739978999817676
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr 144 (701)
.+|-+-|||||-..+ ..+..+|.++|.++++|-+- +.....+.+-..... ..+++|..|.
T Consensus 116 ~~yD~iliD~Pp~l~--~l~~~al~aad~vLv~v~~d----~~s~~~l~~~~~~~~-~~ilvn~~d~ 175 (244)
T pfam06564 116 GQYRWILLDLPQGFS--PLTRQLLELADVTLAVVHAD----ANCHIRLHQQALPAG-CHLLINDFRI 175 (244)
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHHCCCEEEEECCC----HHHHHHHHHCCCCCC-CEEEEECCCH
T ss_conf 789999997999968--99999999769608996888----589999732334467-7488642455
No 486
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.23 Score=27.48 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=55.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
.+|.|+|..++||||++..|-..-+..|- +.|.-+-.......+.|.-++. +||-.+-
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hl----stgd~~r~~~~~~t~lg~~~k~------------------~i~~g~l 58 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHL----DTGDILRAAIAERTELGEEIKK------------------YIDKGEL 58 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEE----CCCCCCCHHHCCCCHHHHHHHH------------------HHHCCCC
T ss_conf 97999899999889999999997699785----5220111100323689999999------------------9875895
Q ss_pred C-CC--HHHHHHHHHHHCEE-EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5-52--89999999860456-999955888883479999999873997899981
Q gi|254780264|r 91 V-DF--TMEVERSIRVTDGA-IALLDSNAGVEPQTETVWRQADKYSVPRVIFCN 140 (701)
Q Consensus 91 ~-DF--~~Ev~~aL~~~Dga-ilvVDa~eGv~~qT~~vlr~~~~~~lp~ilvIN 140 (701)
+ |- .+-+...+..+|.. .++.|..-.-..|.+.+=|.....+.+.-.++|
T Consensus 59 v~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~ 112 (178)
T COG0563 59 VPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIE 112 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 041769979999997506577299989983699999999999863998552602
No 487
>PRK13948 shikimate kinase; Provisional
Probab=91.75 E-value=0.35 Score=26.35 Aligned_cols=106 Identities=18% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH-HHHHHCCCEEEEEEEEEECCCCCCC
Q ss_conf 986567102527999868788977899999998087321422017956137808-8987085376407999960777871
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-QEQERGITITSASTTVFWPGRDGGQ 79 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~-~E~eRgITi~ss~~sl~~~~~~~~~ 79 (701)
|++.--+..-.||.+||.-++||||+-..|-..- +..+.|++. .|+.-|+||.-
T Consensus 1 ~~~~~~p~~~~~IvLIG~mGsGKStiGk~LA~~l-----------~~~fiD~D~~Ie~~~g~sI~e-------------- 55 (182)
T PRK13948 1 MARLEVPRPATFVALAGFMGTGKSRIGWELSRAL-----------ALHFVDTDKLITRVVGKSIPE-------------- 55 (182)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-----------CCCEEECHHHHHHHHCCCHHH--------------
T ss_conf 9866579999818988999998899999999996-----------959888849999988939999--------------
Q ss_pred EEEEEEECCCCCCCHH---HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 3899981798755289---999999860456999955888883479999999873997899981
Q gi|254780264|r 80 KKLTIIDTPGHVDFTM---EVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCN 140 (701)
Q Consensus 80 ~~iNlIDTPGH~DF~~---Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvIN 140 (701)
+...=|..-|-. ++...+.-.+. .||+.--|+-. .+..++.+.+.+ .+++++
T Consensus 56 ----IF~~~GE~~FR~~E~~~l~~l~~~~~--~VIStGGG~v~-~~~n~~~l~~~g--~vv~L~ 110 (182)
T PRK13948 56 ----VFAQEGEEYFRACEKEVVRRVTRLDY--AVISLGGGTFI-HEENRRALLGRG--PVVVLW 110 (182)
T ss_pred ----HHHHHCHHHHHHHHHHHHHHHHCCCC--EEEECCCCEEC-CHHHHHHHHHCC--EEEEEE
T ss_conf ----99984899999999999999974799--69975885005-899999999689--899996
No 488
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.71 E-value=0.7 Score=24.37 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=11.6
Q ss_pred ECCCCHHHHHHHHHHHCCC
Q ss_conf 0122102488989871786
Q gi|254780264|r 268 FKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 268 ~~~~Gv~~LLd~i~~~lPs 286 (701)
-++-|=+.||.++..++|.
T Consensus 152 gTGSGKTTllnaL~~~i~~ 170 (323)
T PRK13833 152 GTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CCCCCHHHHHHHHHHHHCC
T ss_conf 7777568999999986402
No 489
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.69 E-value=0.93 Score=23.61 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=28.6
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCEEC-CCCEECCCHHH-HHHHCCC
Q ss_conf 2527999868788977899999998087321-42201-79561378088-9870853
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHK-IGEVH-DGSATMDWMEQ-EQERGIT 62 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~-~g~v~-~g~~~~D~~~~-E~eRgIT 62 (701)
.=.-++++|+.++|||||...|. |.... .|++. +|..+....+. -+++||.
T Consensus 25 ~Gei~~lvG~nGaGKSTl~~~i~---Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~ 78 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILS---GLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCCCC
T ss_conf 99899999889989999999995---7768985789999999999999999987994
No 490
>PRK06547 hypothetical protein; Provisional
Probab=91.64 E-value=0.2 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.2
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 2527999868788977899999998
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYY 33 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~ 33 (701)
+.|-|+|=|.-++|||||+..|-..
T Consensus 14 ~~~iVaIDG~sGaGKTTLA~~La~~ 38 (184)
T PRK06547 14 DMITVLIDGRSGSGKTTLAGELAAC 38 (184)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7699998689988889999999974
No 491
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=91.62 E-value=0.94 Score=23.56 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HCCCCCCCCEE
Q ss_conf 799986878897789999999-80873214220
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILY-YAGKSHKIGEV 43 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~-~~g~i~~~g~v 43 (701)
=++|.|.-++||||+.|++.+ .-|...+.+++
T Consensus 30 lflI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~ 62 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQ 62 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 899988999978899999999983888233664
No 492
>PRK13947 shikimate kinase; Provisional
Probab=91.58 E-value=0.29 Score=26.80 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=52.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH-HHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 527999868788977899999998087321422017956137808-8987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-QEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~-~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
.|||.+||.-++||||+--.|-..- +..+.|.+. .|+.-|.||.- +...=
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L-----------~~~fiD~D~~Ie~~~g~sI~e------------------If~~~ 51 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTL-----------SFGFIDTDKEIEKMAGMTVSE------------------IFEKD 51 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-----------CCCEEECHHHHHHHCCCCHHH------------------HHHHH
T ss_conf 9858997999998899999999997-----------969898749999882998899------------------99984
Q ss_pred CCCCCHHHHHHHHH-HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87552899999998-6045699995588888347999999987399789998
Q gi|254780264|r 89 GHVDFTMEVERSIR-VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFC 139 (701)
Q Consensus 89 GH~DF~~Ev~~aL~-~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvI 139 (701)
|-.-|-..=...+. ++.--=.||+..-|+- .....++.+.+.+ .++++
T Consensus 52 GE~~FR~~E~~~l~~~~~~~~~VistGGG~v-~~~~n~~~l~~~g--~vi~L 100 (171)
T PRK13947 52 GEVRFRSLEKAAVRKAARLKNLVIATGGGVV-LNPENIVQLRKNG--VLICL 100 (171)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCHHHHHHHHHCC--EEEEE
T ss_conf 8999999999999974036897997898500-6999999999689--89997
No 493
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=91.56 E-value=0.22 Score=27.55 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=8.0
Q ss_pred EECCCCCEEEECCCCCCC
Q ss_conf 003567326413874443
Q gi|254780264|r 372 DEAYCGDIIALAGLKETT 389 (701)
Q Consensus 372 ~~a~aGdIv~I~Gl~~~~ 389 (701)
...++|+ +|.+||+.+
T Consensus 219 k~Lp~G~--Gi~NLDNLR 234 (417)
T pfam06431 219 RDLPSGH--GINNLDNLR 234 (417)
T ss_pred CCCCCCC--CCCCHHHHH
T ss_conf 6899998--853215577
No 494
>PRK08118 topology modulation protein; Reviewed
Probab=91.55 E-value=0.22 Score=27.65 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 279998687889778999999980873
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKS 37 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i 37 (701)
+-|.|||..++|||||+.+|=...|.-
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 679998899987999999999988969
No 495
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=91.55 E-value=0.18 Score=28.20 Aligned_cols=64 Identities=27% Similarity=0.299 Sum_probs=41.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHH-HCCC-CCCCCEECCCCEEC---CCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 52799986878897789999999-8087-32142201795613---78088987085376407999960
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILY-YAGK-SHKIGEVHDGSATM---DWMEQEQERGITITSASTTVFWP 73 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~-~~g~-i~~~g~v~~g~~~~---D~~~~E~eRgITi~ss~~sl~~~ 73 (701)
..-+||.|.-++|||||.|++-| --|. ..+.|++..-...+ |+.+-+.+=...++.+....+|.
T Consensus 30 l~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~~~~~~~~~~~~lef~~~~~~yR~~r~ 98 (1063)
T TIGR00618 30 LKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSLSRADSEEALAELEFALDTKLYRVFRS 98 (1063)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
T ss_conf 573677788998354599999998728887751467888754200107877654640135601146776
No 496
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=91.50 E-value=0.26 Score=27.15 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=32.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEE
Q ss_conf 2799986878897789999999808732-142201-79561378088987085376407
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~ 67 (701)
..++|+|..++|||||+..|+ |... ..|++. +|.-..+....+..+.|++-..-
T Consensus 41 e~vaIvG~sGsGKSTL~~ll~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 96 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLE---NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE 96 (226)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEECC
T ss_conf 999999999984999999996---45467887899999993448999997326999247
No 497
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.47 E-value=0.38 Score=26.06 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCC--C-CCCEEC-CCCEECCCHHHHHH
Q ss_conf 5279998687889778999999980873--2-142201-79561378088987
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKS--H-KIGEVH-DGSATMDWMEQEQE 58 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i--~-~~g~v~-~g~~~~D~~~~E~e 58 (701)
=..+||+|.-++|||||...|. |.. + .-|++. +|.-..+..+.++.
T Consensus 27 Gei~~iiG~nGaGKSTLl~~i~---G~~~~~~~~G~I~~~G~~i~~~~~~~~~ 76 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLA---GREDYEVTGGTVTFKGKDLLELSPEDRA 76 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCCCCEEEECCEECCCCCHHHHH
T ss_conf 9799999999999999999983---7755687523599999985648988997
No 498
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.37 E-value=0.25 Score=27.22 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=29.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEECC-CCEECCCHHHHHHHCCCEEEE
Q ss_conf 2799986878897789999999808732-1422017-956137808898708537640
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVHD-GSATMDWMEQEQERGITITSA 66 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~~-g~~~~D~~~~E~eRgITi~ss 66 (701)
-.+||+|..++|||||+..|+ |... ..|++.= |.-..+....+..+.|++-..
T Consensus 31 ~~v~ivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 85 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLA---GLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEEHHHHCHHHHHHCEEEECC
T ss_conf 999999999985999999996---7254786589999999577259999732699916
No 499
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP); InterPro: IPR005292 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to the ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux reduced its function. The C-terminal domain seems to be highly conserved. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=91.36 E-value=0.22 Score=27.65 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEE
Q ss_conf 67326413874443211012778841015663665--2135777615643220257888854102742014450457546
Q gi|254780264|r 376 CGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPE--PVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQT 453 (701)
Q Consensus 376 aGdIv~I~Gl~~~~~gdTl~~~~~~~~~~~~~~~~--Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~ 453 (701)
--||||+..+++.-.. ..+.|........|+ | -+=.||=.|. .-+-+++|...-+ | +.+++ +.||.
T Consensus 1267 E~NIVAVER~KEYS~T----E~EAPW~~~~~~PP~~WP-~~G~VEFRnY--~~RYR~~LDlVLr-~--~~~~~--~GGEK 1334 (1542)
T TIGR00957 1267 ETNIVAVERLKEYSET----EKEAPWQIQETAPPSGWP-PRGRVEFRNY--CLRYREDLDLVLR-D--INVTI--EGGEK 1334 (1542)
T ss_pred CCCEEEEEECHHHCCC----CCCCCCCCCCCCCCCCCC-CCCEEEECCC--EEEECCCCCEEEE-E--EEEEE--ECCEE
T ss_conf 1120213101000256----776885003788768876-8860663242--2431376223444-3--16688--56737
Q ss_pred E-EE---ECCHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 8-76---0664789999999874111332010
Q gi|254780264|r 454 N-LS---GMGELHLEIIVDRMLREFKVDANVG 481 (701)
Q Consensus 454 i-l~---g~GElhLev~l~~L~~~f~iei~vs 481 (701)
+ +- |.|.--|-.|+=|+.+--.=||.+.
T Consensus 1335 VGIVGRTGAGKSSlTLgLFRI~E~A~GEI~ID 1366 (1542)
T TIGR00957 1335 VGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1366 (1542)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 77662168755688999888753248726872
No 500
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=91.32 E-value=0.58 Score=24.89 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC----CCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 999868788977899999998087321----42201-795613780889870853764079999607
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHK----IGEVH-DGSATMDWMEQEQERGITITSASTTVFWPG 74 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~----~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~~~ 74 (701)
+||+|..++|||||+-.|+ |.+.. .|++. +|.-.++..+.+..+ +....+++.+++
T Consensus 45 lgivGeSGsGKSTl~~~i~---gll~~~~~~sG~I~~~G~~i~~~~~~~~~~---~r~~~I~~vfQd 105 (330)
T PRK09473 45 LGIVGESGSGKSQTAFALM---GLLAANGRIGGSATFNGREILNLPEKELNK---LRAEQISMIFQD 105 (330)
T ss_pred EEEECCCCCHHHHHHHHHH---CCCCCCCCEEEEEEECCEECCCCCHHHHHH---HHCCCEEEEEEC
T ss_conf 9998689877999999997---688888833589999999866589999998---630667999607
Done!