HHsearch alignment for GI: 254780264 and conserved domain: pfam00009
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=4e-43 Score=295.66 Aligned_cols=184 Identities=40% Similarity=0.643 Sum_probs=153.7
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~-~~d~~~~E~~rgiTi~~~~~~~~~~-----~~~i~~iDt 74 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEG-ELDRLKEERERGITIKIAAVSFETK-----KRHINIIDT 74 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHCCEEEEEEEEEEEEC-----CCEEEEEEC
T ss_conf 9967899993899449999999971548765464310033-3365588885782698769999608-----936899989
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHCCCCCCCCCE
Q ss_conf 98755289999999860456999955888883479999999873997899981767658-75555666411110268330
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG-ADFYRSVEMISSRLGANPLV 166 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~-~d~~~~l~~i~~~l~~~~~~ 166 (701)
T Consensus 75 PGh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e----------- 143 (185)
T pfam00009 75 PGHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEE----------- 143 (185)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH-----------
T ss_conf 987143999999986465642999867685323099999999828987999977327776769999999-----------
Q ss_pred ECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00234555665302442234431145222698513874004317889999998863002345789998632778998898
Q gi|254780264|r 167 IQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRI 246 (701)
Q Consensus 167 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l 246 (701)
T Consensus 144 ------------------------------------------------------------~~~~ll~~~~~--------- 154 (185)
T pfam00009 144 ------------------------------------------------------------ISRELLEKYGF--------- 154 (185)
T ss_pred ------------------------------------------------------------HHHHHHHHHHC---------
T ss_conf ------------------------------------------------------------99998887324---------
Q ss_pred HHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCC
Q ss_conf 7300000310100323431000122102488989871786
Q gi|254780264|r 247 RSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPS 286 (701)
Q Consensus 247 ~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPs 286 (701)
T Consensus 155 ---------~~~~~pivpiSA~~G~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 155 ---------GGETIPVIPGSALTGEGIDTLLEALDLYLPS 185 (185)
T ss_pred ---------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf ---------8998869996789997989999999977859