HHsearch alignment for GI: 254780264 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.15 E-value=0.0099 Score=36.26 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH---HHHHHCCCEEEEEEEEE---ECC----------
Q ss_conf 27999868788977899999998087321422017956137808---89870853764079999---607----------
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME---QEQERGITITSASTTVF---WPG---------- 74 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~---~E~eRgITi~ss~~sl~---~~~---------- 74 (701)
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~---~~~~-~V~lit~Dt~R~gA~eQL~~ya~~l-~v~~~~~~~~~d~~~~~~~~l 76 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLK---KQGK-KVLLVAADTFRAAAIEQLKQLAERL-GVPVFGSGTGSDPAAVAFDAV 76 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HCCC-EEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHH
T ss_conf 6999989999988999999999999---7799-2899975877688999999999863-981781487778789999999
Q ss_pred --CCCCCEEEEEEECCCCCCCHHH----HHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf --7787138999817987552899----999998--604569999558888834799999998739978999817676
Q gi|254780264|r 75 --RDGGQKKLTIIDTPGHVDFTME----VERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 75 --~~~~~~~iNlIDTPGH~DF~~E----v~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr 144 (701)
T Consensus 77 ~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~f~~~~~~-~~~I~TKlDe 152 (196)
T pfam00448 77 EKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNA-LNQAKAFNEAVGI-TGVILTKLDG 152 (196)
T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH-HHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 99884689999998999874767789999999852287302899856778213-7899987600477-6268884057