HHsearch alignment for GI: 254780264 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.15  E-value=0.0099  Score=36.26  Aligned_cols=127  Identities=18%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHH---HHHHHCCCEEEEEEEEE---ECC----------
Q ss_conf             27999868788977899999998087321422017956137808---89870853764079999---607----------
Q gi|254780264|r   11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME---QEQERGITITSASTTVF---WPG----------   74 (701)
Q Consensus        11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~---~E~eRgITi~ss~~sl~---~~~----------   74 (701)
T Consensus         2 ~vi~lvGptGvGKTTTiaKLAa~~~---~~~~-~V~lit~Dt~R~gA~eQL~~ya~~l-~v~~~~~~~~~d~~~~~~~~l   76 (196)
T pfam00448         2 NVILLVGLQGSGKTTTIAKLAAYLK---KQGK-KVLLVAADTFRAAAIEQLKQLAERL-GVPVFGSGTGSDPAAVAFDAV   76 (196)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH---HCCC-EEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHH
T ss_conf             6999989999988999999999999---7799-2899975877688999999999863-981781487778789999999


Q ss_pred             --CCCCCEEEEEEECCCCCCCHHH----HHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             --7787138999817987552899----999998--604569999558888834799999998739978999817676
Q gi|254780264|r   75 --RDGGQKKLTIIDTPGHVDFTME----VERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDK  144 (701)
Q Consensus        75 --~~~~~~~iNlIDTPGH~DF~~E----v~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr  144 (701)
T Consensus        77 ~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~f~~~~~~-~~~I~TKlDe  152 (196)
T pfam00448        77 EKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNA-LNQAKAFNEAVGI-TGVILTKLDG  152 (196)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH-HHHHHHHHHHCCC-CCEEEEEECC
T ss_conf             99884689999998999874767789999999852287302899856778213-7899987600477-6268884057