HHsearch alignment for GI: 254780264 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.92 E-value=0.13 Score=29.15 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCC--EECCCCEECCCHHHHHHHCCCEEE-EEEEEEEC-------------CCCC
Q ss_conf 9986878897789999999808732142--201795613780889870853764-07999960-------------7778
Q gi|254780264|r 14 GIMAHIDAGKTTTTERILYYAGKSHKIG--EVHDGSATMDWMEQEQERGITITS-ASTTVFWP-------------GRDG 77 (701)
Q Consensus 14 ~iiaHvd~GKTTL~d~LL~~~g~i~~~g--~v~~g~~~~D~~~~E~eRgITi~s-s~~sl~~~-------------~~~~ 77 (701)
T Consensus 4 iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~ 82 (174)
T pfam02492 4 VLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLELKL 82 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99348878899999999984448984799993365302079998-70696189974886645433369999999985578
Q ss_pred CCEEEEEEECCCCCCCHH--HHHHHHHHHCEEEEEEECC---CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 713899981798755289--9999998604569999558---888834799999998739978999817676587
Q gi|254780264|r 78 GQKKLTIIDTPGHVDFTM--EVERSIRVTDGAIALLDSN---AGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 78 ~~~~iNlIDTPGH~DF~~--Ev~~aL~~~DgailvVDa~---eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
T Consensus 83 ~~~d~iiIE~sGla~p~~i~~~~~~-~~~~~~i~vvDa~~~~~~~~~~-~~~~~Qi---~~AD~vvlNK~Dl~~~ 152 (174)
T pfam02492 83 PRLDLLFIETTGLACPAPVLDLRSD-LGLDGVVTVVDVKNFTEGEDIP-EKAPDQI---AFADLIVINKTDLAPA 152 (174)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC-CCCCEEEEEEECHHHHHCCCCH-HHHHHHH---HHCCEEEEEHHHCCCC
T ss_conf 9999999958766770777765320-2654599999723433002007-8999999---8769999846653782