HHsearch alignment for GI: 254780264 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=96.33 E-value=0.081 Score=30.42 Aligned_cols=133 Identities=15% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHEE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 10252-79998687889778999999980873214220179561378088987085376407999960777871389998
Q gi|254780264|r 7 IEDSR-NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 7 ~e~iR-Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlI 85 (701)
T Consensus 31 ~~~~~lnIavtGesG~GkSsfINalR-------g~g~e~~~aA~tGv----------vetT~~~~~Y~hp~~p--nV~lw 91 (375)
T pfam05049 31 ISSAPLKIAVTGDSGNGKSSFINALR-------GIGHEEDGSAPTGV----------VETTMKRTPYSHPHFP--NVVLW 91 (375)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHH-------CCCCCCCCCCCCCC----------EEECCCCCCCCCCCCC--CEEEE
T ss_conf 44382479985489986789999874-------78987777687687----------6632675567899999--80796
Q ss_pred ECCC--CCCCHHHHHHH---HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----------HH
Q ss_conf 1798--75528999999---986045699995588888347999999987399789998176765875----------55
Q gi|254780264|r 86 DTPG--HVDFTMEVERS---IRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGAD----------FY 150 (701)
Q Consensus 86 DTPG--H~DF~~Ev~~a---L~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d----------~~ 150 (701)
T Consensus 92 DLPG~gt~~f~~~~Yl~~~~f~~yDfFiiiss~r--f~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e 169 (375)
T pfam05049 92 DLPGLGATNFTVETYLEEMKFSEYDFFIIISSER--FSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKE 169 (375)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHH
T ss_conf 2899998998989999874856477899996775--43201899999998389479998623676065762589999989
Q ss_pred HHHHHHCCCC
Q ss_conf 5666411110
Q gi|254780264|r 151 RSVEMISSRL 160 (701)
Q Consensus 151 ~~l~~i~~~l 160 (701)
T Consensus 170 ~~Lq~IR~~c 179 (375)
T pfam05049 170 KVLQNIQDNC 179 (375)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999