HHsearch alignment for GI: 254780264 and conserved domain: pfam09547

>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.20  E-value=0.052  Score=31.61  Aligned_cols=153  Identities=18%  Similarity=0.232  Sum_probs=89.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--------EEEEEECCCCCCCEEEE
Q ss_conf             7999868788977899999998087321422017956137808898708537640--------79999607778713899
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--------STTVFWPGRDGGQKKLT   83 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--------~~sl~~~~~~~~~~~iN   83 (701)
T Consensus        19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l--~~~~~~kVR   94 (492)
T pfam09547        19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKL--DDGLKFKVR   94 (492)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEE--CCCCEEEEE
T ss_conf             99962672067366999999985-468889877877643037767-89981333688766531048883--698448999


Q ss_pred             EEECCCCC-------------------------CCHHHHHHHHH------HHCEEEEEEECCCC------CCHHHHHHHH
Q ss_conf             98179875-------------------------52899999998------60456999955888------8834799999
Q gi|254780264|r   84 IIDTPGHV-------------------------DFTMEVERSIR------VTDGAIALLDSNAG------VEPQTETVWR  126 (701)
Q Consensus        84 lIDTPGH~-------------------------DF~~Ev~~aL~------~~DgailvVDa~eG------v~~qT~~vlr  126 (701)
T Consensus        95 LiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~  174 (492)
T pfam09547        95 LVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99652567557555546897513048987888786888764654133157714499956887567664442357999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEC
Q ss_conf             998739978999817676587555566641111026833000
Q gi|254780264|r  127 QADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ  168 (701)
Q Consensus       127 ~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~  168 (701)
T Consensus       175 ELk~i~KPFiillNs~~P~s~et~~L~~eL~ekY~v~Vl~vn  216 (492)
T pfam09547       175 ELKEIGKPFIILLNSQRPYSEETKELRDELEEKYDVPVLPVN  216 (492)
T ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999709988999838998998999999999998599579967