HHsearch alignment for GI: 254780264 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.20 E-value=0.052 Score=31.61 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--------EEEEEECCCCCCCEEEE
Q ss_conf 7999868788977899999998087321422017956137808898708537640--------79999607778713899
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--------STTVFWPGRDGGQKKLT 83 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--------~~sl~~~~~~~~~~~iN 83 (701)
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l--~~~~~~kVR 94 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKL--DDGLKFKVR 94 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEE--CCCCEEEEE
T ss_conf 99962672067366999999985-468889877877643037767-89981333688766531048883--698448999
Q ss_pred EEECCCCC-------------------------CCHHHHHHHHH------HHCEEEEEEECCCC------CCHHHHHHHH
Q ss_conf 98179875-------------------------52899999998------60456999955888------8834799999
Q gi|254780264|r 84 IIDTPGHV-------------------------DFTMEVERSIR------VTDGAIALLDSNAG------VEPQTETVWR 126 (701)
Q Consensus 84 lIDTPGH~-------------------------DF~~Ev~~aL~------~~DgailvVDa~eG------v~~qT~~vlr 126 (701)
T Consensus 95 LiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ 174 (492)
T pfam09547 95 LVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99652567557555546897513048987888786888764654133157714499956887567664442357999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEC
Q ss_conf 998739978999817676587555566641111026833000
Q gi|254780264|r 127 QADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ 168 (701)
Q Consensus 127 ~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~~~~~~ 168 (701)
T Consensus 175 ELk~i~KPFiillNs~~P~s~et~~L~~eL~ekY~v~Vl~vn 216 (492)
T pfam09547 175 ELKEIGKPFIILLNSQRPYSEETKELRDELEEKYDVPVLPVN 216 (492)
T ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999709988999838998998999999999998599579967