HHsearch alignment for GI: 254780264 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.72 E-value=1.4e-07 Score=67.31 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=71.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~--~~f~~--~------~~---~---Ti~~~~~~--~~i~~---~~~~~~l~iwDt~G~e 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD--GKFSE--Q------YK---S---TIGVDFKT--KTIEV---DGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CC---C---CCCEEEEE--EEEEE---CCEEEEEEEEECCCCH
T ss_conf 899999899779999999941--99999--8------68---8---45666677--99999---9999999999679944
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr 144 (701)
T Consensus 61 ~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl 117 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCH
T ss_conf 664779988336653688436899899999999999999867999825511645685