HHsearch alignment for GI: 254780264 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.72  E-value=1.4e-07  Score=67.31  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         2 Ki~vvG~~~vGKTsli~r~~~--~~f~~--~------~~---~---Ti~~~~~~--~~i~~---~~~~~~l~iwDt~G~e   60 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTD--GKFSE--Q------YK---S---TIGVDFKT--KTIEV---DGKRVKLQIWDTAGQE   60 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCC--C------CC---C---CCCEEEEE--EEEEE---CCEEEEEEEEECCCCH
T ss_conf             899999899779999999941--99999--8------68---8---45666677--99999---9999999999679944


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf             5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK  144 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr  144 (701)
T Consensus        61 ~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl  117 (164)
T smart00175       61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDL  117 (164)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCH
T ss_conf             664779988336653688436899899999999999999867999825511645685