HHsearch alignment for GI: 254780264 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.07 E-value=5.2e-09 Score=76.60 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=76.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
T Consensus 13 ~~kililG~~~~GKTsil~~l~~--~~~------~~------~-------~pTvg~~~~~~~~-----~~~~l~iwD~~G 66 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES------VT------T-------IPTIGFNVETVTY-----KNISFTVWDVGG 66 (175)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC--CCC------CC------C-------CCCCCCEEEEEEE-----CCEEEEEEECCC
T ss_conf 89999998899998999999965--997------77------5-------7978810799998-----989999998999
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHH----HHHCCCCEEEEECCCCCCC
Q ss_conf 755289999999860456999955888883-47999999----9873997899981767658
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQ----ADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~----~~~~~lp~ilvINKiDr~~ 146 (701)
T Consensus 67 qe~~r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~ 128 (175)
T smart00177 67 QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCC
T ss_conf 85455367775577618999986687789999999999996315316986999984566767