RPSBLAST alignment for GI: 254780264 and conserved domain: TIGR00491
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
Score = 54.8 bits (132), Expect = 6e-08
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEV--HDGSA--TMDWMEQEQERGITITSASTTV 70
++ H+D GKTT ++I A + G + H G+ MD +E + +
Sbjct: 9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
PG L IDTPGH FT +R + D AI ++D N G +PQT+
Sbjct: 69 --PG-------LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 119
Query: 131 YSVPRVIFCNKMDKM 145
Y P V+ NK+D++
Sbjct: 120 YKTPFVVAANKIDRI 134