RPSBLAST alignment for GI: 254780264 and conserved domain: cd04167
>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213
Score = 94.2 bits (235), Expect = 1e-19
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHK-IGEVHDGSATMDWM---EQEQERGITITSA 66
RN I H+ GKT+ + ++ +H DG + + + EQERGI+I S+
Sbjct: 1 RNVAIAGHLHHGKTSLLDMLIEQ---THDLTPSGKDGWKPLRYTDIRKDEQERGISIKSS 57
Query: 67 STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR 126
++ P G IIDTPGHV+F EV ++R++DG + ++D GV TE + R
Sbjct: 58 PISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIR 117
Query: 127 QADKYSVPRVIFCNKMDK 144
A +P V+ NK+D+
Sbjct: 118 HAILEGLPIVLVINKIDR 135