RPSBLAST alignment for GI: 254780264 and conserved domain: KOG0468

>gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]. Length = 971
 Score =  145 bits (368), Expect = 3e-35
 Identities = 168/799 (21%), Positives = 297/799 (37%), Gaps = 139/799 (17%)

Query: 8   EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS 67
           E  RN G++ H+  GKT   + ++             D   T D +  EQERG +I S  
Sbjct: 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYT-DTLFYEQERGCSIKSTP 184

Query: 68  TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ 127
            T+      G    + I+DTPGHV+F+ E   S+R++DG + ++D   GV   TE + + 
Sbjct: 185 VTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKH 244

Query: 128 ADKYSVPRVIFCNKMDKM-------GADFYRS-------VEMISSRLGANPLVIQLPVGS 173
           A +  +P V+  NK+D++         D Y         +  + S    +   +  P+  
Sbjct: 245 AIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFSKDDNPVVSPILG 304

Query: 174 ESNF---------------------QGVIDLVEMKALLW--------------KNEDLGS 198
              F                      G ID+ +    LW              K  D   
Sbjct: 305 NVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSG 364

Query: 199 SWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVK 258
           S   VE   +      S      +  ++   + +   L  E++  +  R L+RL  +   
Sbjct: 365 SRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLN-PRPLLRL--VCKS 421

Query: 259 FFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIK------GVDVKSNSEIDVSAVDSS 312
           FF +  G           +D  V+++PSP +  A K      G       E  V    S 
Sbjct: 422 FFGIESG----------FVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASG 471

Query: 313 PLSMLAFKVMA-DSFVGSLTFCRIYSGKISKGDSLLNTVKG---------KKERVGRMLQ 362
           PL +   K+   D  V    F R+YSG++  G  +    +              VG +  
Sbjct: 472 PLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWV 531

Query: 363 MHSNSREDIDEAYCGDIIALAGL-KETTTGDTLCDPSRPIVL---ERMDF-PEPVIQIAI 417
           + +  R  +  A  G  + + G+ +      T+        +     + F  EPV+++A+
Sbjct: 532 VRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAV 591

Query: 418 EPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREF-KV 476
           EP +  +  +M   L ++    P +   ++  SG+  + G GEL+++ ++  + + + ++
Sbjct: 592 EPLNPSELPKMLDGLRKINKSYPLVITKVE-ESGEHVILGTGELYMDCVLYDLRKSYSEI 650

Query: 477 DANVGAPYVSYRESVTKS----CVHDYIHKKQS--------------------------- 505
           +  V  P V + E+V ++    C  +  +KK                             
Sbjct: 651 EIKVADPVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNR 710

Query: 506 ----------GGAGQFAKVKI-AFEPNPDGDDFVFESKI---VGGAIPKEYIPGVRKGIE 551
                           A   I AF P+  G + + +  +   V   +       + +G +
Sbjct: 711 KRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQ 770

Query: 552 SMLSSGPLAGFPMLGMKVTLLDG----DYHDVDSSVLAFEIAARACFREAASKMGVQLLE 607
                GPL   P+  +K  LLD     +        +    A R  +         +L+E
Sbjct: 771 WGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQI-IPTARRVAYSAFLMAT-PRLME 828

Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR--SVYVVIDAHVPLSCMFKYVDSLRS 665
           P+  VE+T PA+ V  V   LS RRG +        S    + A++P+   F +   LR 
Sbjct: 829 PVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRV 888

Query: 666 MSQGRGQYTMIFDHYAPVP 684
            +QG+     +FDH+  VP
Sbjct: 889 HTQGQAFCLSVFDHWRIVP 907