RPSBLAST alignment for GI: 254780264 and conserved domain: KOG0468
>gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]. Length = 971
Score = 145 bits (368), Expect = 3e-35
Identities = 168/799 (21%), Positives = 297/799 (37%), Gaps = 139/799 (17%)
Query: 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAS 67
E RN G++ H+ GKT + ++ D T D + EQERG +I S
Sbjct: 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYT-DTLFYEQERGCSIKSTP 184
Query: 68 TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ 127
T+ G + I+DTPGHV+F+ E S+R++DG + ++D GV TE + +
Sbjct: 185 VTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKH 244
Query: 128 ADKYSVPRVIFCNKMDKM-------GADFYRS-------VEMISSRLGANPLVIQLPVGS 173
A + +P V+ NK+D++ D Y + + S + + P+
Sbjct: 245 AIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFSKDDNPVVSPILG 304
Query: 174 ESNF---------------------QGVIDLVEMKALLW--------------KNEDLGS 198
F G ID+ + LW K D
Sbjct: 305 NVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSG 364
Query: 199 SWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVK 258
S VE + S + ++ + + L E++ + R L+RL +
Sbjct: 365 SRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLN-PRPLLRL--VCKS 421
Query: 259 FFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIK------GVDVKSNSEIDVSAVDSS 312
FF + G +D V+++PSP + A K G E V S
Sbjct: 422 FFGIESG----------FVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASG 471
Query: 313 PLSMLAFKVMA-DSFVGSLTFCRIYSGKISKGDSLLNTVKG---------KKERVGRMLQ 362
PL + K+ D V F R+YSG++ G + + VG +
Sbjct: 472 PLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWV 531
Query: 363 MHSNSREDIDEAYCGDIIALAGL-KETTTGDTLCDPSRPIVL---ERMDF-PEPVIQIAI 417
+ + R + A G + + G+ + T+ + + F EPV+++A+
Sbjct: 532 VRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAV 591
Query: 418 EPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREF-KV 476
EP + + +M L ++ P + ++ SG+ + G GEL+++ ++ + + + ++
Sbjct: 592 EPLNPSELPKMLDGLRKINKSYPLVITKVE-ESGEHVILGTGELYMDCVLYDLRKSYSEI 650
Query: 477 DANVGAPYVSYRESVTKS----CVHDYIHKKQS--------------------------- 505
+ V P V + E+V ++ C + +KK
Sbjct: 651 EIKVADPVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNR 710
Query: 506 ----------GGAGQFAKVKI-AFEPNPDGDDFVFESKI---VGGAIPKEYIPGVRKGIE 551
A I AF P+ G + + + + V + + +G +
Sbjct: 711 KRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQ 770
Query: 552 SMLSSGPLAGFPMLGMKVTLLDG----DYHDVDSSVLAFEIAARACFREAASKMGVQLLE 607
GPL P+ +K LLD + + A R + +L+E
Sbjct: 771 WGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQI-IPTARRVAYSAFLMAT-PRLME 828
Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR--SVYVVIDAHVPLSCMFKYVDSLRS 665
P+ VE+T PA+ V V LS RRG + S + A++P+ F + LR
Sbjct: 829 PVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRV 888
Query: 666 MSQGRGQYTMIFDHYAPVP 684
+QG+ +FDH+ VP
Sbjct: 889 HTQGQAFCLSVFDHWRIVP 907