RPSBLAST alignment for GI: 254780264 and conserved domain: cd01342
>gnl|CDD|58078 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.. Length = 83
Score = 59.6 bits (144), Expect = 3e-09
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 314 LSMLAFKVMADSFVGSLTFCRIYSGKISKGDSL--LNTVKGKKERVGRMLQMHSNSREDI 371
L L FKV D G++ R+ SG + KGD + G K +V + + ++
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEV 56
Query: 372 DEAYCGDIIALAGLK--ETTTGDTLCD 396
DEA GDI+ + + GDTL D
Sbjct: 57 DEAVAGDIVGIVLKDKDDIKIGDTLTD 83