RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] (701 letters) >gnl|CDD|178789 PRK00007, PRK00007, elongation factor G; Reviewed. Length = 693 Score = 1318 bits (3415), Expect = 0.0 Identities = 429/697 (61%), Positives = 526/697 (75%), Gaps = 6/697 (0%) Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60 MAR+ +E RN GIMAHIDAGKTTTTERIL+Y G +HKIGEVHDG+ATMDWMEQEQERG Sbjct: 1 MARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG 60 Query: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120 ITITSA+TT FW ++ IIDTPGHVDFT+EVERS+RV DGA+A+ D+ GVEPQ Sbjct: 61 ITITSAATTCFWKD-----HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQ 115 Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180 +ETVWRQADKY VPR+ F NKMD+ GADFYR VE I RLGANP+ IQLP+G+E +F+GV Sbjct: 116 SETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGV 175 Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 +DLV+MKA++W DLG++++ EIP D+KD A YR+K+IE+ E D+ M+ YL+GE Sbjct: 176 VDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEE 235 Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300 + + I++ +R TI+ + PVLCGS+FKNKGVQPLLDAVVDYLPSPLDV AIKG+ Sbjct: 236 LTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 Query: 301 NS-EIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGR 359 E++ A D P S LAFK+M D FVG LTF R+YSG + G +LN+ KGKKER+GR Sbjct: 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGR 355 Query: 360 MLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEP 419 +LQMH+N RE+I E GDI A GLK+TTTGDTLCD PI+LE M+FPEPVI +A+EP Sbjct: 356 ILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEP 415 Query: 420 KSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN 479 K+K DQE+M +AL +L EDPS RVS D +GQT ++GMGELHL+IIVDRM REFKV+AN Sbjct: 416 KTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEAN 475 Query: 480 VGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIP 539 VG P V+YRE++ K + KQSGG GQ+ V I FEPN G + F +KIVGG IP Sbjct: 476 VGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIP 535 Query: 540 KEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAAS 599 KEYIP V KGI+ + SG LAG+P++ +KVTL DG YHDVDSS +AF+IA F+EAA Sbjct: 536 KEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAK 595 Query: 600 KMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKY 659 K LLEP+MKVEV P EY+GDVIGDL+SRRGQI+G E+R VI A VPLS MF Y Sbjct: 596 KANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGY 655 Query: 660 VDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYS 696 LRSM+QGR Y+M FDHY VP +V++EI +K Sbjct: 656 ATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 >gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed. Length = 691 Score = 1251 bits (3240), Expect = 0.0 Identities = 432/692 (62%), Positives = 540/692 (78%), Gaps = 5/692 (0%) Query: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGIT 62 R+ +E +RN GIMAHIDAGKTTTTERILYY GKSHKIGEVHDG+ATMDWMEQEQERGIT Sbjct: 1 REFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT 60 Query: 63 ITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE 122 ITSA+TT FW G ++ IIDTPGHVDFT+EVERS+RV DGA+A+ D+ +GVEPQ+E Sbjct: 61 ITSAATTCFWKG-----HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE 115 Query: 123 TVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVID 182 TVWRQADKY VPR++F NKMD++GADF+RSVE I RLGAN + IQLP+G+E +F+GVID Sbjct: 116 TVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVID 175 Query: 183 LVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFS 242 L++MKA++W +E LG+ ++ +IP D+K+ A YR+K+IE++ E+D+ M+ YL+GE + Sbjct: 176 LIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT 235 Query: 243 SDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNS 302 + I++ IR TI+++FFPVLCGS+FKNKGVQPLLDAVVDYLPSPLDV AIKG++ + Sbjct: 236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEE 295 Query: 303 EIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQ 362 EI+ A D P + LAFK+M D FVG LTF R+YSG + G +LNT KGKKER+GR+LQ Sbjct: 296 EIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQ 355 Query: 363 MHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSK 422 MH+N RE+I E Y GDI A GLK+TTTGDTLCD PI+LE M+FPEPVI +A+EPK+K Sbjct: 356 MHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTK 415 Query: 423 GDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGA 482 DQ++M LAL +L EDP+ RV D +GQT +SGMGELHL+IIVDRM REFKV+ANVGA Sbjct: 416 ADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGA 475 Query: 483 PYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEY 542 P V+YRE++TKS + +KKQSGG GQ+ V I FEPN +G F F +KIVGG IPKEY Sbjct: 476 PQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEY 535 Query: 543 IPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602 IP V KG+E + +G LAG+PM+ +K TL DG YHDVDSS LAF+IAA +EAA K G Sbjct: 536 IPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAG 595 Query: 603 VQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDS 662 +LEP+MKVEV P EY+GDVIGDL+ RRGQIQG E R ++ A VPLS MF Y Sbjct: 596 PVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYATD 655 Query: 663 LRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694 LRS +QGR ++M FDHY VP ++++EI +K Sbjct: 656 LRSATQGRATFSMEFDHYEEVPKNIAEEIIKK 687 >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. Length = 689 Score = 1009 bits (2610), Expect = 0.0 Identities = 411/694 (59%), Positives = 510/694 (73%), Gaps = 7/694 (1%) Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60 MAR + RN GI AHIDAGKTTTTERIL+Y G+ HKIGEVHDG+ATMDWMEQE+ERG Sbjct: 1 MARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERG 60 Query: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120 ITITSA+TTVFW G ++ IIDTPGHVDFT+EVERS+RV DGA+A+LD+ GV+PQ Sbjct: 61 ITITSAATTVFWKGH-----RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQ 115 Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180 +ETVWRQA++Y VPR+ F NKMDK GA+F R V I RLGAN + IQLP+G+E NF GV Sbjct: 116 SETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGV 175 Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 IDLVEMKA + N D G+ EIP D+ + A R+ ++E++ E D+ M+ YL+GE Sbjct: 176 IDLVEMKAYFF-NGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEE 234 Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300 + + I++ IR G ++ +FFPVLCGS+FKNKGVQ LLDAVVDYLPSP DV AIKG+D + Sbjct: 235 LTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDT 294 Query: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360 EI+ A D P S LAFKV D FVG LTF R+YSG + G + N+ K KKERVGR+ Sbjct: 295 EKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRL 354 Query: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420 ++MH+N+RE+I E GDI A GLK+TTTGDTLCDP ++LERM+FPEPVI +A+EPK Sbjct: 355 VKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPK 414 Query: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480 +K DQE+M +AL +L EDP+ R DP +GQT ++GMGELHL+IIVDRM REFKV+ANV Sbjct: 415 TKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANV 474 Query: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540 GAP V+YRE++ + H KQSGG GQ+ VKI FEP + F ++I GG IP+ Sbjct: 475 GAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFVNEIKGGVIPR 533 Query: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600 EYIP V KG++ + SGPLAG+P++ +K TL DG YHDVDSS +AF++AA F+EA K Sbjct: 534 EYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKK 593 Query: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660 LLEP+MKVEV VP EY+GDV+GDLSSRRG I+G E R I A VPLS MF Y Sbjct: 594 ANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYA 653 Query: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694 LRS +QGRG Y+M F HY VP+ V+ EI EK Sbjct: 654 TDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEK 687 >gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed. Length = 668 Score = 999 bits (2585), Expect = 0.0 Identities = 361/678 (53%), Positives = 476/678 (70%), Gaps = 10/678 (1%) Query: 16 MAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGR 75 + H AGKTT TE IL+Y G H+IGEV DG+ TMD+M +E+ERGI+ITSA+TT W G Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG- 59 Query: 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPR 135 K+ +IDTPGHVDFT EVER++RV DGA+ ++ + GVEPQTETVWRQA+KY VPR Sbjct: 60 ----HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPR 115 Query: 136 VIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNED 195 +IF NKMD+ GADF+R + + +LGA + +QLP+G +F GV+DL+ MKA + D Sbjct: 116 IIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRY---D 172 Query: 196 LGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTI 255 G + +EIP ++ D A R++++E++ E DD M+ YL+GE S + I++ +R T+ Sbjct: 173 EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATL 232 Query: 256 SVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315 + + PV CGS+ KNKGVQ LLDAVVDYLPSPL+V + G D + +E+ PL Sbjct: 233 AGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDP--DGPLV 290 Query: 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAY 375 L FK M D FVG L+ R+YSG + KGD+L N+ GKKERVGR+ +MH RE++DEA Sbjct: 291 ALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAV 350 Query: 376 CGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRL 435 GDI+A+A LK+ TGDTLCD PI+LE M+FPEPVI +AIEPK KGD+E++S AL +L Sbjct: 351 AGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKL 410 Query: 436 VAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSC 495 EDP+LRV D +GQT LSGMGELHL++ ++R+ RE+ V+ G P V YRE++ K Sbjct: 411 AEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKA 470 Query: 496 VHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLS 555 HKKQSGG GQF V + EP P G+ F F K+VGGA+P++YIP V KG+ L Sbjct: 471 EGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALE 530 Query: 556 SGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVT 615 G LAG+P++ +KVTL DG YH VDSS +AF+IAAR FREA K LLEP+MKVEV+ Sbjct: 531 KGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVS 590 Query: 616 VPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTM 675 VP E+VGDVIGDLSSRRG+I G E+R V+ A VPL+ MF Y LRS++QGRG ++M Sbjct: 591 VPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSM 650 Query: 676 IFDHYAPVPAHVSKEIQE 693 F HY VP +V++++ Sbjct: 651 EFSHYEEVPGNVAEKVIA 668 >gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed. Length = 687 Score = 934 bits (2417), Expect = 0.0 Identities = 356/685 (51%), Positives = 477/685 (69%), Gaps = 7/685 (1%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RN GI+AHIDAGKTT TERIL+Y GK HK+GEV DG+ DWM QEQERGITI SA+T+ Sbjct: 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC 68 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 W + +IDTPGH+DFT EVERS+RV DGA+ + D+ GV+PQTETVWRQAD+ Sbjct: 69 DWDNHR-----INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR 123 Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALL 190 Y +PR+IF NKMD++GAD ++ +E I R G PL +QLP+GSE F+GV+DL+ L Sbjct: 124 YGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELH 183 Query: 191 WKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 + D GS+ + IPE++ + R+K+IE++ E DD ++ YL+GE S++++R+ + Sbjct: 184 FSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 Query: 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVD 310 R GT S PVL GS+ KN G++PLLDAVVDYLPSPL+V +G + + V Sbjct: 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK-DNGKPVKVDPDP 302 Query: 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSRED 370 PL L FKV D + G LT+ R+YSG + G L N GK+E+VGR+ ++ N RE+ Sbjct: 303 EKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREE 362 Query: 371 IDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSL 430 +D A GDI+A+AGLKE TGDTL D + P++LE + FPEPV+ +A+EP+ +GD+++++ Sbjct: 363 VDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEPVVSLAVEPERRGDEQKLAE 422 Query: 431 ALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRES 490 AL +LV EDPSLRV D +GQT LSGMGELHLE+ ++R+ REFK++ N G P V+YRE+ Sbjct: 423 ALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRET 482 Query: 491 VTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGI 550 + K Y HKKQ GG GQF +V + EP G F+F SK+VGGAIP+E IP V KGI Sbjct: 483 IRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGI 542 Query: 551 ESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLM 610 L+SGPLAG+P+ ++VT+LDG YH VDSS AF+ AAR F EA K LLEP+M Sbjct: 543 REALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIM 602 Query: 611 KVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVY-VVIDAHVPLSCMFKYVDSLRSMSQG 669 ++E+TVP E+VGDV+GDLS RRG+I+G E R V++ A PL+ +F Y LRSM++G Sbjct: 603 ELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKG 662 Query: 670 RGQYTMIFDHYAPVPAHVSKEIQEK 694 RG +TM F H+ PVP V K++ K Sbjct: 663 RGSFTMEFSHFDPVPPAVQKKVGSK 687 >gnl|CDD|185604 PTZ00416, PTZ00416, elongation factor 2; Provisional. Length = 836 Score = 207 bits (529), Expect = 7e-54 Identities = 204/799 (25%), Positives = 351/799 (43%), Gaps = 144/799 (18%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSAT-MDWMEQEQERGITITSASTT 69 RN ++AH+D GK+T T+ ++ AG I + G A D EQERGITI S + Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVCKAGI---ISSKNAGDARFTDTRADEQERGITIKSTGIS 76 Query: 70 VF--WPGRDGGQKK---LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETV 124 ++ DG K+ + +ID+PGHVDF+ EV ++RVTDGA+ ++D GV QTETV Sbjct: 77 LYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 136 Query: 125 WRQADKYSVPRVIFCNKMD------KMGAD-----FYRSVEMISSRLGA--NPLVIQLPV 171 RQA + + V+F NK+D ++ + F +++E ++ + + L+ + V Sbjct: 137 LRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQV 196 Query: 172 GSE-------SNFQG----------------VIDLVEMKALLWKN---EDLGSSWDVVEI 205 E S QG ++ +M LW + + W E Sbjct: 197 YPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDET 256 Query: 206 PEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCG 265 K ++ +++ I +L D+ M+ ++ + L ++++ L G Sbjct: 257 NAQGKKLKRAFCQFILDPICQLFDAVMN-------EDKEKYDKM--LKSLNIS----LTG 303 Query: 266 SSFKNKGVQPLLDAV---------------VDYLPSPLDVRAIKGVDVKSNSEIDVSAV- 309 + G +PLL AV VD+LPSP + + + ++ D +A Sbjct: 304 EDKELTG-KPLLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANA 362 Query: 310 ----DS-SPLSMLAFKVMADSFVGSL-TFCRIYSGKISKGDSLL----NTVKGKKE---- 355 D PL M K++ S G F R++SG ++ G + N V GKKE Sbjct: 363 IRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFE 422 Query: 356 -RVGRMLQMHSNSREDIDEAYCGDIIALAGLKE--TTTGDTLCDPSRPIVLERMDFP-EP 411 + R + M E I++ CG+ + L G+ + +G T+ + M + P Sbjct: 423 KNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSP 481 Query: 412 VIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471 V+++A+EPK+ D ++ L RL DP + + + SG+ ++G GELH+EI + + Sbjct: 482 VVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTE-ESGEHIVAGCGELHVEICLKDLE 540 Query: 472 REF-KVDANVGAPYVSYRESVT----KSCV------HDYIHKK----QSGGAGQFAKVKI 516 ++ +D V P VSYRE+VT ++C+ H+ ++ K A + K+ Sbjct: 541 DDYANIDIIVSDPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKV 600 Query: 517 AFEPNPDG------DDFVFESK-----------------IVGGAIPKEYIPGVRKGIESM 553 E +P D + ++ +V +Y+ ++ S Sbjct: 601 GPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKGVQYMNEIKDSCVSA 660 Query: 554 LS----SGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI--AARACFREAASKMGVQLLE 607 G L M G++ +LD H A +I AR F +LLE Sbjct: 661 FQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLE 720 Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS--VYVVIDAHVPLSCMFKYVDSLRS 665 P+ V++T P + +G + L+ RRG + G+E R I A++P++ F + +LR+ Sbjct: 721 PMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRA 780 Query: 666 MSQGRGQYTMIFDHYAPVP 684 + G+ +FDH+ VP Sbjct: 781 ATSGQAFPQCVFDHWQVVP 799 >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. Length = 720 Score = 193 bits (491), Expect = 2e-49 Identities = 118/469 (25%), Positives = 212/469 (45%), Gaps = 56/469 (11%) Query: 274 QPLLDAVVDYLPSPLDVRAIKGVDVKS---NSEIDVSAVDSSP---LSMLAFKVMADSFV 327 Q +LD V+ +LPSP++ + + + NSE+ + ++ P L+++ K++ D Sbjct: 244 QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHA 303 Query: 328 GSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKE 387 G + R+YSG I G + + K R+ ++ R ++DE G+I+A+ GLK+ Sbjct: 304 GEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 Query: 388 TTTGDTLCDPSRPIV-LERMD-FPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445 G+T+C I E + EPV+ +AIE K+ D ++ L ++ EDP++ V Sbjct: 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVE 423 Query: 446 MDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSCVHDYIHKKQS 505 ++ +G+ +SGMGELHLEIIV+++ ++ +D P V YRE+VT + + Sbjct: 424 INEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTS-----PVVEG 478 Query: 506 GGAGQFAKVKIAFEPNPDG------DDFVFESKIVGGAIPKEYIPG-------------- 545 + + I EP + + + + K+ + I Sbjct: 479 KSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYY 538 Query: 546 -------VRKGI--------------ESMLSSGPLAGFPMLGMKVTLLDGDYHD--VDSS 582 + +GI + +GP+A +G+KV L+D H+ V Sbjct: 539 EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRG 598 Query: 583 VLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS 642 A R+ A + LLEP KV + VP + +G ++ +RRGQI + Sbjct: 599 PAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG 658 Query: 643 VYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEI 691 V I A P++ MF + ++R + GR ++ + VP ++ +E Sbjct: 659 DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQNLQQEF 707 Score = 119 bits (299), Expect = 3e-27 Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 3/150 (2%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RN GI+AHID GKTT ++ +L AG + E+ +D+ EQEQERGITI +A+ ++ Sbjct: 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGQQLYLDFDEQEQERGITINAANVSM 77 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 +G + + +IDTPGHVDF +V R++R DGAI ++ + GV PQTETV RQA K Sbjct: 78 VHE-YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK 136 Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 +V V+F NK+D++ + + + + R Sbjct: 137 ENVKPVLFINKVDRLINELKLTPQELQERF 166 >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional. Length = 526 Score = 170 bits (434), Expect = 1e-42 Identities = 130/414 (31%), Positives = 193/414 (46%), Gaps = 70/414 (16%) Query: 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEV-------HDGSATMDWMEQEQER 59 + R F I++H DAGKTT TE++L + G + G V H AT DWME E++R Sbjct: 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRH---ATSDWMEMEKQR 63 Query: 60 GITITSASTTV--FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV 117 GI++TS +V F P RD + ++DTPGH DF+ + R++ D A+ ++D+ GV Sbjct: 64 GISVTS---SVMQF-PYRD---CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV 116 Query: 118 EPQTET---VWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSE 174 EPQT V R D P F NK+D+ G + ++ I LG I P+G Sbjct: 117 EPQTRKLMEVCRLRD---TPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMG 173 Query: 175 SNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDS 234 F+GV DL + L++ + + +V I K N D+++ +L + + Sbjct: 174 KRFKGVYDLYNDEVELYQPGEGHTIQEVEII----KGLDNPELDELLGE--DLAEQLREE 227 Query: 235 --YLQGES--FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDV 290 +QG S F + + G ++ PV GS+ N GVQ LDA V++ P+P Sbjct: 228 LELVQGASNEFDLEAFLA----GELT----PVFFGSALNNFGVQEFLDAFVEWAPAPQP- 278 Query: 291 RAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA-------DSFVGSLTFCRIYSGKISKG 343 + E +V + S FK+ A D + F R+ SGK KG Sbjct: 279 --------RQTDEREVEPTE-EKFSGFVFKIQANMDPKHRD----RIAFVRVCSGKFEKG 325 Query: 344 DSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTT---GDTL 394 + + GK R+ L + RE ++EAY GDII GL T GDT Sbjct: 326 MKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDII---GLHNHGTIQIGDTF 376 >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. Length = 527 Score = 166 bits (422), Expect = 1e-41 Identities = 128/487 (26%), Positives = 220/487 (45%), Gaps = 48/487 (9%) Query: 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH----DGSATMDWMEQEQERGI 61 +++ R F I++H DAGKTT TE++L Y G G V A DWME E++RGI Sbjct: 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGI 66 Query: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 +IT+ + + +P RD + ++DTPGH DF+ + R++ D + ++D+ GVE +T Sbjct: 67 SITT--SVMQFPYRD---CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT 121 Query: 122 ETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVI 181 + P F NK+D+ D ++ + + L N I P+G F+GV Sbjct: 122 RKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVY 181 Query: 182 DLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSA--MDSYLQGE 239 L++ + L+++ G + V + + + A ++S V D + D E Sbjct: 182 HLLKDETYLYQSGT-GGTIQAVRQVKGLNNPA-------LDSAVGSDLAQQLRDELELVE 233 Query: 240 SFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVK 299 S++ + G ++ PV G++ N GV LD ++ + P P ++ V+ Sbjct: 234 GASNEFDLAAFHGGEMT----PVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRT-VE 288 Query: 300 SNSEIDVSAVDSSPLSMLAFKVMAD---SFVGSLTFCRIYSGKISKGDSLLNTVKGKKER 356 E S FK+ A+ + F R+ SGK KG L + GK Sbjct: 289 PTEE---------KFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVV 339 Query: 357 VGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFP-----EP 411 + L + RE ++EAY GDII L GDT E++ F P Sbjct: 340 ISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQG------EKIKFTGIPNFAP 393 Query: 412 VIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471 + I K Q+++ L +L +E+ +++V ++ + +G L +++V R+ Sbjct: 394 ELFRRIRLKDPLKQKQLLKGLVQL-SEEGAVQVFRPLDNNDLIVGAVGVLQFDVVVYRLK 452 Query: 472 REFKVDA 478 E+ V+A Sbjct: 453 EEYNVEA 459 >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional. Length = 843 Score = 156 bits (397), Expect = 1e-38 Identities = 160/594 (26%), Positives = 257/594 (43%), Gaps = 132/594 (22%) Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATM-DWMEQEQER 59 M +K I RN ++AH+D GK+T T+ ++ AG I + G M D E ER Sbjct: 13 MDKKHNI---RNMSVIAHVDHGKSTLTDSLVAAAGI---IAQEVAGDVRMTDTRADEAER 66 Query: 60 GITITSASTTVFW-----------PGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAI 108 GITI S ++++ RDG + + +ID+PGHVDF+ EV ++R+TDGA+ Sbjct: 67 GITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGAL 126 Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ 168 ++D GV QTETV RQA + V+ NKMD+ ++ Sbjct: 127 VVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC--------------------FLE 166 Query: 169 LPVGSE---SNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPE--DMKDSAN--------S 215 L V E F VI+ + +++ LG DV PE + SA + Sbjct: 167 LQVDGEEAYQTFSRVIENANVIMATYEDPLLG---DVQVYPEKGTVAFSAGLHGWAFTLT 223 Query: 216 YRDKMIESIVELDDSAMDSYLQGES-------------------------FSSDRIRSLI 250 KM S +D+S M L GE+ F + I+ +I Sbjct: 224 NFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQII 283 Query: 251 R-------------LGTISVKFFPV---LCGSSFKNKGVQPLLDA-------VVDYLPSP 287 L + V L G + + +Q L A ++ +LPSP Sbjct: 284 NTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIFHLPSP 343 Query: 288 LDVRAIKGVDVKSNSEID------VSAVDSS-PLSMLAFKVMADSFVGS-LTFCRIYSGK 339 + + V+ +D + D + PL + K++ S G F R++SG Sbjct: 344 AKAQRYR-VENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGT 402 Query: 340 ISKGDSLL----NTVKGKK-----ERVGRMLQMHSNSREDIDEAYCGDIIALAGL----- 385 ++ G + N V G+K + V R + +E +++ CG+ +A+ GL Sbjct: 403 VATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFIT 462 Query: 386 KETTTGDTLCDPSRPIVLERMDFP-EPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRV 444 K T + + PI + M F PV+++A++ K+ D ++ L RL DP ++ Sbjct: 463 KNATLTNEKEVDAHPI--KAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC 520 Query: 445 SMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN--VGAPYVSYRESVT-KSC 495 +++ SG+ ++G GELHLEI + + +F A V P VS+RE+V KSC Sbjct: 521 TIE-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSC 573 Score = 45.9 bits (109), Expect = 3e-05 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 20/141 (14%) Query: 557 GPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI---------AARACFREAASKMGVQLLE 607 G LA M G+ + D H A I AR + +LLE Sbjct: 675 GALAEENMRGICFEVCDVVLH-------ADAIHRGGGQIIPTARRVIYASQLTAKPRLLE 727 Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS---VYVVIDAHVPLSCMFKYVDSLR 664 P+ VE+ P + +G + L+ +RG + + R +Y I A++P+ F + +LR Sbjct: 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLY-NIKAYLPVIESFGFSGTLR 786 Query: 665 SMSQGRGQYTMIFDHYAPVPA 685 + + G+ +FDH+ + + Sbjct: 787 AATSGQAFPQCVFDHWDMMSS 807 >gnl|CDD|181029 PRK07560, PRK07560, elongation factor EF-2; Reviewed. Length = 731 Score = 147 bits (373), Expect = 1e-35 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 13/230 (5%) Query: 276 LLDAVVDYLPSPLD-----VRAI-KGVDVKSNSEID---VSAVDSSPLSMLAFKVMADSF 326 +LD VV +LP+P++ + I KG D+ NSE+ ++ + PL M+ ++ D Sbjct: 247 VLDMVVKHLPNPIEAQKYRIPKIWKG-DL--NSEVGKAMLNCDPNGPLVMMVTDIIVDPH 303 Query: 327 VGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLK 386 G + R++SG + KG + KK RV ++ RE+++E G+I A+ GLK Sbjct: 304 AGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLK 363 Query: 387 ETTTGDTLCDPSRPIVLERMD-FPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445 + G+T+ E + EPV+ +AIE K+ D ++ L +L EDP+L V Sbjct: 364 DARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423 Query: 446 MDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSC 495 ++ +G+ LSGMGELHLE+I R+ R++ ++ P V YRE+V Sbjct: 424 INEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKS 473 Score = 133 bits (336), Expect = 2e-31 Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 5/141 (3%) Query: 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSA-TMDWMEQEQERGITIT 64 E RN GI+AHID GKTT ++ +L AG I E G +D+ E+EQ RGITI Sbjct: 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGM---ISEELAGEQLALDFDEEEQARGITIK 72 Query: 65 SASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETV 124 +A+ ++ +G + + +IDTPGHVDF +V R++R DGAI ++D+ GV PQTETV Sbjct: 73 AANVSMVHE-YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETV 131 Query: 125 WRQADKYSVPRVIFCNKMDKM 145 RQA + V V+F NK+D++ Sbjct: 132 LRQALRERVKPVLFINKVDRL 152 Score = 92.2 bits (230), Expect = 4e-19 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 546 VRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDS------SVLAFEIAARACFREAAS 599 + +G + GPLA P+ G+KV L D H+ D+ V+ A R A Sbjct: 562 IIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHE-DAIHRGPAQVIP---AVRNAIFAAML 617 Query: 600 KMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKY 659 LLEP+ KV++ VP +Y+G V ++ RRG+I E +I+A P++ MF + Sbjct: 618 TAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGF 677 Query: 660 VDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEI 691 +RS ++GR ++ F + PVP + +I Sbjct: 678 AGEIRSATEGRALWSTEFAGFEPVPDSLQLDI 709 >gnl|CDD|129071 smart00838, EFG_C, Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 85 Score = 136 bits (346), Expect = 1e-32 Identities = 51/85 (60%), Positives = 62/85 (72%) Query: 605 LLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLR 664 LLEP+MKVEVTVP EY+GDVIGDL+SRRG+I+G E R VI A VPLS MF Y LR Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLR 60 Query: 665 SMSQGRGQYTMIFDHYAPVPAHVSK 689 S +QGR ++M F HY VP +++ Sbjct: 61 SATQGRATWSMEFSHYEEVPKSIAE 85 >gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. Length = 594 Score = 115 bits (290), Expect = 4e-26 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 7/146 (4%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RN I+AH+D GKTT + +L +G V + MD + E+ERGITI + +T + Sbjct: 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAI 59 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 + G K+ I+DTPGH DF EVER + + DG + L+D++ G PQT V ++A + Sbjct: 60 RYNG-----TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE 114 Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMI 156 + ++ NK+D+ A V+ + Sbjct: 115 LGLKPIVVINKIDRPSARPDEVVDEV 140 Score = 104 bits (261), Expect = 8e-23 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 34/228 (14%) Query: 275 PLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCR 334 PL DA+V ++P+P PL ML + D ++G + R Sbjct: 181 PLFDAIVRHVPAP-------------------KGDLDEPLQMLVTNLDYDEYLGRIAIGR 221 Query: 335 IYSGKISKGDSL-LNTVKGKKE--RVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTG 391 ++ G + KG + L G E R+ ++L R +IDEA GDI+A+AGL++ G Sbjct: 222 VHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIG 281 Query: 392 DTLCDPSRPIVLERMDFPEPVIQIAIEPK------SKGDQERMSLALSRLVAE---DPSL 442 +T+ DP P L + EP + + +G + RL+ E + +L Sbjct: 282 ETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVAL 341 Query: 443 RVSMDPNSGQTNLSGMGELHLEIIVDRMLRE-FKVDANVGAPYVSYRE 489 RV ++ + +SG GELHL I+++ M RE F++ VG P V Y+E Sbjct: 342 RVEDTESADKFEVSGRGELHLSILIETMRREGFEL--QVGRPQVIYKE 387 Score = 47.7 bits (114), Expect = 9e-06 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR-SVYVVIDAHVPLSCMFKYVDS 662 + LEP+ ++ + VP E+VG VI L R+G++ E + ++ +P + + Sbjct: 391 KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTE 450 Query: 663 LRSMSQGRGQYTMIFDHYAP 682 + ++G G +FD Y P Sbjct: 451 FLTDTRGTGIMNHVFDEYEP 470 >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. Length = 595 Score = 115 bits (289), Expect = 5e-26 Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RNF I+AHID GK+T +R+L Y G I E +D M+ E+ERGITI + + + Sbjct: 4 RNFSIIAHIDHGKSTLADRLLEYTGA---ISEREMREQVLDSMDLERERGITIKAQAVRL 60 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 + +DG L +IDTPGHVDF+ EV RS+ +GA+ L+D+ G+E QT Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQT 111 Score = 69.7 bits (171), Expect = 2e-12 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 33/228 (14%) Query: 272 GVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 G++ +L+A+V +P P +PL L F D++ G + Sbjct: 167 GIEEILEAIVKRVPPPKGD-------------------PDAPLKALIFDSHYDNYRGVVA 207 Query: 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGD----IIALAGLKE 387 R++ G I GD + GK+ V + + DE G+ I + + + Sbjct: 208 LVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKT-DELSAGEVGYIIAGIKDVSD 266 Query: 388 TTTGDTLCDPSRPI--VLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445 GDT+ P L +P++ + P D E + AL +L D SL + Sbjct: 267 VRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASL--T 324 Query: 446 MDPNSGQTNLSG-----MGELHLEIIVDRMLREFKVDANVGAPYVSYR 488 +P S G +G LH+EII +R+ REF +D AP V YR Sbjct: 325 YEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYR 372 Score = 41.2 bits (97), Expect = 0.001 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS---VYVVIDAHVPLS-CMFKY 659 + EP +K + P EY+G ++ +RG E V ++ + +PL+ ++ + Sbjct: 397 HVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYE--MPLAEIVYDF 454 Query: 660 VDSLRSMSQG 669 D L+S+S+G Sbjct: 455 FDKLKSISRG 464 >gnl|CDD|180078 PRK05433, PRK05433, GTP-binding protein LepA; Provisional. Length = 600 Score = 108 bits (272), Expect = 6e-24 Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 5/112 (4%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGK-SHKIGEVHDGSATMDWMEQEQERGITITSASTT 69 RNF I+AHID GK+T +R++ G S + E+ +D M+ E+ERGITI + + Sbjct: 8 RNFSIIAHIDHGKSTLADRLIELTGTLSER--EMKA--QVLDSMDLERERGITIKAQAVR 63 Query: 70 VFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 + + +DG L +IDTPGHVDF+ EV RS+ +GA+ ++D++ GVE QT Sbjct: 64 LNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 115 Score = 60.4 bits (148), Expect = 2e-09 Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 43/233 (18%) Query: 272 GVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331 G++ +L+A+V+ +P P KG D A PL L F D++ G + Sbjct: 171 GIEEVLEAIVERIPPP------KG---------DPDA----PLKALIFDSWYDNYRGVVV 211 Query: 332 FCRIYSGKISKGDSLLNTVKGKK---ERVGRMLQMHSNSREDIDEAYCGDI--IALAGLK 386 R+ G + KGD + GK+ + VG + +DE G++ I AG+K Sbjct: 212 LVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVF----TPKMVPVDELSAGEVGYII-AGIK 266 Query: 387 E---TTTGDTLCDPSRPIVLERMD-FPE--PVIQIAIEPKSKGDQERMSLALSRLVAEDP 440 + GDT+ P E + F E P++ + P D E + AL +L D Sbjct: 267 DVRDARVGDTITLAKNP-AEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDA 325 Query: 441 SLRVSMDPNSGQTNLSG-----MGELHLEIIVDRMLREFKVDANVGAPYVSYR 488 SL + +P + Q G +G LH+EII +R+ REF +D AP V Y Sbjct: 326 SL--TYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYE 376 Score = 45.0 bits (108), Expect = 6e-05 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLS-CMFKYVDSLRS 665 EP++K + VP EYVG V+ +RG + E V + +PL+ +F + D L+S Sbjct: 404 EPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKS 463 Query: 666 MSQG 669 +S+G Sbjct: 464 VSRG 467 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 107 bits (268), Expect = 1e-23 Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 30/182 (16%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 I+ + GK+T R+L I E G+ +E G T Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGN----KFITEYKPGTTRNYVTTVIEEDGKTY------- 50 Query: 71 FWPGRDGGQKKLTIIDTPGHVDF-------TMEVERSIRVTDGAIALLDSNAGVEPQTET 123 K ++DT G D+ VE S+RV D I +LD +E QT+ Sbjct: 51 ----------KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKE 100 Query: 124 VWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDL 183 + A+ +VP ++ NK+D A V + ++L P +I L + N + Sbjct: 101 IIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFKI 158 Query: 184 VE 185 VE Sbjct: 159 VE 160 >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional. Length = 607 Score = 93.2 bits (231), Expect = 2e-19 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA 66 IE RN I+AH+D GKTT +++L +G E + MD + E+ERGITI + Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAK 59 Query: 67 STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR 126 +T + W ++ I+DTPGH DF EVER + + D + ++D+ G PQT V + Sbjct: 60 NTAIKW-----NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTK 114 Query: 127 QADKYSVPRVIFCNKMDKMGA 147 +A Y + ++ NK+D+ GA Sbjct: 115 KAFAYGLKPIVVINKVDRPGA 135 Score = 77.4 bits (190), Expect = 1e-14 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 32/229 (13%) Query: 273 VQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTF 332 + PL A+VD++P+P ++D+ P M ++ +S+VG + Sbjct: 183 MTPLYQAIVDHVPAP---------------DVDLDG----PFQMQISQLDYNSYVGVIGI 223 Query: 333 CRIYSGKISKGDSLL---NTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETT 389 RI GK+ + + K + +VG++L R + D A GDI+A+ GL E Sbjct: 224 GRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELN 283 Query: 390 TGDTLCDPSRPIVLERMDFPEPVIQ----IAIEP----KSKGDQERMSLA-LSRLVAEDP 440 DT+CD L + EP + + P + K R L L++ + + Sbjct: 284 ISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNV 343 Query: 441 SLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRE 489 +LRV ++ +SG GELHL ++++ M RE + V P V +RE Sbjct: 344 ALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFRE 391 Score = 29.3 bits (65), Expect = 3.9 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 9/110 (8%) Query: 585 AFEIAA---RACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE-N 640 FE+A + FRE + EP V + V ++ G V+ L R+G ++ + Sbjct: 377 GFELAVSRPKVIFREIDGRKQ----EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPD 432 Query: 641 RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPV-PAHVSK 689 V +D +P + + +M+ G G F HY V P V + Sbjct: 433 GKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQ 482 >gnl|CDD|161900 TIGR00487, IF-2, translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. Length = 587 Score = 65.6 bits (160), Expect = 4e-11 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 29/187 (15%) Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG 74 IM H+D GKT+ + I + K+ + G GIT + V Sbjct: 92 IMGHVDHGKTSLLDSI-----RKTKVAQGEAG-------------GITQHIGAYHV---- 129 Query: 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP 134 + K +T +DTPGH FT R +VTD + ++ ++ GV PQT A +VP Sbjct: 130 ENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP 189 Query: 135 RVIFCNKMDKMGADFYRSVEMISSRLGANPL-----VIQLPVGSESNFQGVIDLVEMKAL 189 ++ NK+DK A+ R V+ S G P I +PV S G+ +L++M L Sbjct: 190 IIVAINKIDKPEANPDR-VKQELSEYGLVPEDWGGDTIFVPV-SALTGDGIDELLDMILL 247 Query: 190 LWKNEDL 196 + E+L Sbjct: 248 QSEVEEL 254 >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. Length = 426 Score = 63.7 bits (155), Expect = 1e-10 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 31/224 (13%) Query: 12 NFGIMAHIDAGKTTTTERILYYAG--------KSHKIGEVHDGSAT------MDWMEQEQ 57 N + H+D GK+TT +LY G K K + G A+ MD +++E+ Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQ-EKGKASFEFAWVMDRLKEER 67 Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG- 116 ERG+TI A + ++TI+D PGH DF + D A+ ++ G Sbjct: 68 ERGVTIDVAHWKFETD-----KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE 122 Query: 117 --VEPQTETVWRQADKYSVPRVIFC-NKMDKMGAD---FYRSVEMISS---RLGANPLVI 167 V+PQT A + ++I NKMD + D F + +S+ ++G NP + Sbjct: 123 FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTV 182 Query: 168 QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKD 211 S N VI E +K + L + D +E PE D Sbjct: 183 PFIPISAWNGDNVIKKSE-NTPWYKGKTLLEALDALEPPEKPTD 225 >gnl|CDD|183433 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed. Length = 425 Score = 58.8 bits (143), Expect = 5e-09 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 26/128 (20%) Query: 12 NFGIMAHIDAGKTTTTERILYYAG-------KSHKIGEVHDGSAT------MDWMEQEQE 58 N ++ H+D GK+T R+LY G + + G + MD +++E+E Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67 Query: 59 RGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT---DGAIALL--DS 113 RG+TI A + + TI+D PGH DF V+ I D A+ ++ D Sbjct: 68 RGVTIDLAHKKF-----ETDKYYFTIVDCPGHRDF---VKNMITGASQADAAVLVVAADD 119 Query: 114 NAGVEPQT 121 GV PQT Sbjct: 120 AGGVMPQT 127 >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. Length = 581 Score = 56.4 bits (136), Expect = 2e-08 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 21/145 (14%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVF 71 H+D GKTT + + G A + +E++RG+TI + Sbjct: 2 IIATAGHVDHGKTTLLKAL--------------TGIAADR-LPEEKKRGMTIDLGFA--Y 44 Query: 72 WPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY 131 +P D +L ID PGH F D A+ ++D++ GV QT D Sbjct: 45 FPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL 101 Query: 132 SVPRVIFC-NKMDKMGADFYRSVEM 155 +P I K D++ + + EM Sbjct: 102 GIPHTIVVITKADRVNEEEIKRTEM 126 Score = 31.0 bits (70), Expect = 1.0 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%) Query: 318 AFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCG 377 AFKV G++ +SG++ GD+L + RV + +Q +D++ AY G Sbjct: 184 AFKVKG---AGTVVTGTAFSGEVKVGDNLRLLPINHEVRV-KAIQAQ---NQDVEIAYAG 236 Query: 378 DIIALA 383 IAL Sbjct: 237 QRIALN 242 >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 394 Score = 55.6 bits (134), Expect = 5e-08 Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 18/138 (13%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-----QEQERGITITSA 66 N G + H+D GKTT T I K G+A + + +E+ RGITI +A Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAK-------EGGAAARAYDQIDNAPEEKARGITINTA 66 Query: 67 STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR 126 R +D PGH D+ + DGAI ++ + G PQT Sbjct: 67 HVEYETENRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL 121 Query: 127 QADKYSVPR-VIFCNKMD 143 A + VP V+F NK D Sbjct: 122 LARQVGVPYIVVFLNKCD 139 >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590 Score = 54.8 bits (132), Expect = 6e-08 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 13/135 (9%) Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEV--HDGSA--TMDWMEQEQERGITITSASTTV 70 ++ H+D GKTT ++I A + G + H G+ MD +E + + Sbjct: 9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 PG L IDTPGH FT +R + D AI ++D N G +PQT+ Sbjct: 69 --PG-------LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 119 Query: 131 YSVPRVIFCNKMDKM 145 Y P V+ NK+D++ Sbjct: 120 YKTPFVVAANKIDRI 134 >gnl|CDD|178672 PLN03126, PLN03126, Elongation factor Tu; Provisional. Length = 478 Score = 53.1 bits (127), Expect = 2e-07 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 10/136 (7%) Query: 12 NFGIMAHIDAGKTTTTERI-LYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 N G + H+D GKTT T + + A + +D +D +E+ RGITI +A+ Sbjct: 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYD---EIDAAPEERARGITINTATVEY 139 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 + + +D PGH D+ + DGAI ++ G PQT+ A + Sbjct: 140 -----ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ 194 Query: 131 YSVPR-VIFCNKMDKM 145 VP V+F NK D++ Sbjct: 195 VGVPNMVVFLNKQDQV 210 >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional. Length = 447 Score = 52.4 bits (125), Expect = 4e-07 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 44/201 (21%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHK---------IGEVHDGSATMDW----MEQEQE 58 N ++ H+D+GK+TTT ++Y G K E++ S W ++ E+E Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68 Query: 59 RGITITSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSN 114 RGITI A TT ++ T+ID PGH DF + D A+ ++DS Sbjct: 69 RGITIDIALWKFETTKYY---------CTVIDAPGHRDFIKNMITGTSQADCAVLIIDST 119 Query: 115 AG-------VEPQTETVWRQADKYSVPRVI-FCNKMDKMGADFYRS-----VEMISS--- 158 G + QT A V ++I CNKMD + ++ V+ +SS Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK 179 Query: 159 RLGANPLVIQLPVGSESNFQG 179 ++G NP ++P S F+G Sbjct: 180 KVGYNP--DKIPFVPISGFEG 198 >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional. Length = 447 Score = 52.1 bits (125), Expect = 5e-07 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 14/136 (10%) Query: 12 NFGIMAHIDAGKTTTTERI---LYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST 68 N G + H+D GKTT T I L GK+ + +D +E+ RGITI +A Sbjct: 63 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAV-----AFDEIDKAPEEKARGITIATAHV 117 Query: 69 TVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQA 128 R +D PGH D+ + DG I ++ + G PQT+ A Sbjct: 118 EYETAKRHYAH-----VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 172 Query: 129 DKYSVPR-VIFCNKMD 143 + VP V+F NK+D Sbjct: 173 RQVGVPSLVVFLNKVD 188 >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional. Length = 446 Score = 52.1 bits (125), Expect = 5e-07 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 26/159 (16%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHK--IGEVHDGSATM-----------DWMEQEQE 58 N ++ H+D+GK+TTT ++Y G K I + +A M D ++ E+E Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68 Query: 59 RGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV- 117 RGITI A W + + TIID PGH DF + D AI ++ S AG Sbjct: 69 RGITIDIA----LWK-FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEF 123 Query: 118 ------EPQTETVWRQADKYSVPRVIFC-NKMDKMGADF 149 + QT A V ++I C NKMD ++ Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 >gnl|CDD|183709 PRK12736, PRK12736, elongation factor Tu; Reviewed. Length = 394 Score = 49.9 bits (120), Expect = 2e-06 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVF 71 N G + H+D GKTT T I + + ++D +E+ERGITI +A Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLAE--RGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71 Query: 72 WPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY 131 R +D PGH D+ + DGAI ++ + G PQT A + Sbjct: 72 TEKRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV 126 Query: 132 SVPR-VIFCNKMD 143 VP V+F NK+D Sbjct: 127 GVPYLVVFLNKVD 139 >gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated. Length = 787 Score = 48.7 bits (117), Expect = 5e-06 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Query: 80 KKLTIIDTPGHVDFTMEVERSIRVTDGAIALL-----DSNAGVEPQTETVWRQADKYSVP 134 K+T +DTPGH FT R +VTD I +L D GV PQT A VP Sbjct: 337 GKITFLDTPGHEAFTAMRARGAQVTD--IVVLVVAADD---GVMPQTIEAINHAKAAGVP 391 Query: 135 RVIFCNKMDKMGAD 148 ++ NK+DK GA+ Sbjct: 392 IIVAINKIDKPGAN 405 >gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2; Provisional. Length = 1049 Score = 47.6 bits (113), Expect = 1e-05 Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNK 141 L IDTPGH FT +R + D A+ ++D N G +PQT +Y P V+ NK Sbjct: 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANK 587 Query: 142 MDKM 145 +D + Sbjct: 588 IDLI 591 >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed. Length = 396 Score = 47.1 bits (113), Expect = 1e-05 Identities = 52/155 (33%), Positives = 69/155 (44%), Gaps = 28/155 (18%) Query: 1 MARKCKIEDSR---NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ 57 MA K K E ++ N G + H+D GKTT T I K GE +D +E+ Sbjct: 1 MA-KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-GEAKAYDQ-IDNAPEEK 57 Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLD 112 RGITI ++ R +D PGH D+ V+ I T DGAI ++ Sbjct: 58 ARGITINTSHVEYETANRHYAH-----VDCPGHADY---VKNMI--TGAAQMDGAILVVS 107 Query: 113 SNAGVEPQT-ETVW--RQADKYSVPR-VIFCNKMD 143 + G PQT E + RQ VP V+F NK D Sbjct: 108 AADGPMPQTREHILLARQVG---VPYIVVFLNKCD 139 >gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated. Length = 586 Score = 45.6 bits (109), Expect = 4e-05 Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 33/144 (22%) Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG-ITITSASTTVFW- 72 ++ H+D GKTT ++I G+A +E G IT +T V Sbjct: 11 VLGHVDHGKTTLLDKI--------------RGTAV-----AAKEAGGITQHIGATEVPID 51 Query: 73 -------PGRDGGQKKLTI-----IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120 P + KL I IDTPGH FT +R + D AI ++D N G +PQ Sbjct: 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQ 111 Query: 121 TETVWRQADKYSVPRVIFCNKMDK 144 T + P V+ NK+D+ Sbjct: 112 TIEAINILKRRKTPFVVAANKIDR 135 >gnl|CDD|178823 PRK00049, PRK00049, elongation factor Tu; Reviewed. Length = 396 Score = 44.8 bits (107), Expect = 8e-05 Identities = 52/155 (33%), Positives = 68/155 (43%), Gaps = 28/155 (18%) Query: 1 MARKCKIEDSR---NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ 57 MA K K E ++ N G + H+D GKTT T I K E +D +E+ Sbjct: 1 MA-KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AEAKA-YDQIDKAPEEK 57 Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLD 112 RGITI +A R +D PGH D+ V+ I T DGAI ++ Sbjct: 58 ARGITINTAHVEYETEKRHYAH-----VDCPGHADY---VKNMI--TGAAQMDGAILVVS 107 Query: 113 SNAGVEPQT-ETVW--RQADKYSVPR-VIFCNKMD 143 + G PQT E + RQ VP V+F NK D Sbjct: 108 AADGPMPQTREHILLARQV---GVPYIVVFLNKCD 139 >gnl|CDD|131089 TIGR02034, CysN, sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). Length = 406 Score = 44.3 bits (105), Expect = 1e-04 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 28/122 (22%) Query: 19 IDAGKTTTTERILYYAG---------------KSHKIGEVHDGSATMDWMEQEQERGITI 63 +D GK+T R+L+ K G D + +D ++ E+E+GITI Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68 Query: 64 TSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEP 119 A ST ++K + DTPGH +T + D A+ L+D+ GV Sbjct: 69 DVAYRYFSTD---------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE 119 Query: 120 QT 121 QT Sbjct: 120 QT 121 >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional. Length = 632 Score = 43.4 bits (103), Expect = 2e-04 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 45/158 (28%) Query: 19 IDAGKTTTTERILY------------YAGKSHKIGEVHDG---SATMDWMEQEQERGITI 63 +D GK+T R+LY S K+G D + +D + E+E+GITI Sbjct: 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92 Query: 64 TSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLDSN 114 A +T ++K + DTPGH +T R++ VT D AI L+D+ Sbjct: 93 DVAYRYFATP---------KRKFIVADTPGHEQYT----RNM-VTGASTADLAIILVDAR 138 Query: 115 AGVEPQTETVWRQADKYS---VPRVIFC-NKMDKMGAD 148 GV QT R + S + V+ NKMD + D Sbjct: 139 KGVLTQTR---RHSFIASLLGIRHVVLAVNKMDLVDYD 173 >gnl|CDD|179943 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional. Length = 474 Score = 37.2 bits (87), Expect = 0.013 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 34/125 (27%) Query: 19 IDAGKTTTTERILYYAGKSHKIGE-----VHDGSATM-------------DWMEQEQERG 60 +D GK+T R+L+ + +I E +H+ S D ++ E+E+G Sbjct: 36 VDDGKSTLIGRLLH---DTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQG 92 Query: 61 ITITSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG 116 ITI A ST ++K I DTPGH +T + D AI L+D+ G Sbjct: 93 ITIDVAYRYFSTE---------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 Query: 117 VEPQT 121 V QT Sbjct: 144 VLDQT 148 >gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 Score = 36.6 bits (85), Expect = 0.024 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 37/133 (27%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TV 70 N G++ H+D GKTT T+ + G T E E +RGI+I Sbjct: 6 NIGMVGHVDHGKTTLTKAL--------------TGVWTDTHSE-ELKRGISIRLGYADAE 50 Query: 71 FW--PGRDGGQ------------------KKLTIIDTPGHVDFTMEVERSIRVTDGAIAL 110 + P DG + ++++ +D PGH + + DGA+ + Sbjct: 51 IYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLV 110 Query: 111 LDSNAGV-EPQTE 122 + +N +PQT+ Sbjct: 111 IAANEPCPQPQTK 123 >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional. Length = 614 Score = 35.0 bits (81), Expect = 0.059 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%) Query: 18 HIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDG 77 H+D GKTT + I G D + +E++RG+TI +WP DG Sbjct: 8 HVDHGKTTLLQAI--------------TGVNA-DRLPEEKKRGMTIDLGYA--YWPQPDG 50 Query: 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 + L ID PGH F + + D A+ ++ + GV QT Sbjct: 51 --RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQT 92 >gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. Length = 429 Score = 34.3 bits (80), Expect = 0.12 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 16/97 (16%) Query: 60 GITITSASTTVFWPGRDGGQKKLTIIDTPG-----HVDFTME---VERSIRVTDGA---I 108 G T S G+ K +IDT G V +E V R+++ + A + Sbjct: 205 GTTRDSIDIPFERNGK-----KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVL 259 Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145 +LD+ G+ Q + + VI NK D + Sbjct: 260 LVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 Score = 28.9 bits (66), Expect = 5.0 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%) Query: 78 GQKKLTIIDTPGHVDFTME--------VERSIRVTDGAIALLDSNAGVEPQTETVWRQAD 129 G ++ +IDT G + E +I D + ++D G+ P+ E + + Sbjct: 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR 104 Query: 130 KYSVPRVIFCNKMDKMG-----ADFYR 151 K P ++ NK+D A+FY Sbjct: 105 KSGKPVILVANKIDGKKEDAVAAEFYS 131 >gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed. Length = 435 Score = 31.9 bits (74), Expect = 0.50 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 17/114 (14%) Query: 60 GITITSASTTVFWPGRDGGQKKLTIIDTPG-----HVDFTME---VERSIRVTDGA---I 108 G T S T +K T+IDT G V +E V R+++ + A + Sbjct: 206 GTTRDSIDTPFER-----DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE-MISSRLG 161 ++D+ G+ Q + A + VI NK D + + + RL Sbjct: 261 LVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314 Score = 28.5 bits (65), Expect = 5.6 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 35/126 (27%) Query: 78 GQKKLTIIDTPGHVDFTMEVERSIRV-TDGAIA-------LLDSNAGVEPQTETV--W-R 126 ++ +IDT G E+ IR + AI ++D AG+ P E + R Sbjct: 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106 Query: 127 QADKYSVPRVIF-CNKMDKMG-----ADFYRSVEMISSRLGA-NPLVIQLPVGSESNFQG 179 +++K VI NK+D +FY LG P I S + +G Sbjct: 107 KSNK----PVILVVNKVDGPDEEADAYEFY--------SLGLGEPYPI-----SAEHGRG 149 Query: 180 VIDLVE 185 + DL++ Sbjct: 150 IGDLLD 155 >gnl|CDD|185031 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional. Length = 356 Score = 29.8 bits (68), Expect = 2.6 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 651 VPLSCMFKYVDSLRSMSQGRGQYTMI 676 V LS + K+VD LR + G+G Y + Sbjct: 25 VGLSGIIKFVDQLRKV--GQGSYDAL 48 >gnl|CDD|150194 pfam09439, SRPRB, Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 Score = 29.7 bits (67), Expect = 3.0 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%) Query: 80 KKLTIIDTPGHVDFTMEVERSIRVTDGAIALL---DSNAGVEPQTET--------VWRQA 128 LT+ID PGHV ++ +++ + L+ DS A + T+T + Sbjct: 49 NSLTLIDFPGHVKLRYKLLETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITEL 108 Query: 129 DKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 K + +I CNK + A R + I L Sbjct: 109 LKNGIDILIACNKQEIFTA---RPPKKIKQAL 137 >gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated. Length = 411 Score = 29.4 bits (67), Expect = 3.1 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 43/136 (31%) Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT--SASTT 69 N G++ H+D GKTT + + G T E E +RGITI A T Sbjct: 11 NIGMVGHVDHGKTTLVQAL--------------TGVWTDRHSE-ELKRGITIRLGYADAT 55 Query: 70 VFW--PGRDGGQ------------------KKLTIIDTPGHVDF--TMEVERSIRVTDGA 107 P + + ++++ +D PGH TM ++ DGA Sbjct: 56 -IRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAAL--MDGA 112 Query: 108 IALLDSNAGV-EPQTE 122 I ++ +N +PQT+ Sbjct: 113 ILVIAANEPCPQPQTK 128 >gnl|CDD|180601 PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional. Length = 368 Score = 29.3 bits (66), Expect = 3.8 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 9/47 (19%) Query: 515 KIAFEPN-PDGDDFVFESKIVGGAIPKEYIP--------GVRKGIES 552 K+ F + P +DF F I G A PK IP G RK I++ Sbjct: 109 KLDFPDDHPMLEDFRFLKSISGDATPKMTIPSPSVLHFRGGRKAIDA 155 >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 429 Score = 29.1 bits (66), Expect = 4.0 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%) Query: 145 MGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVI 181 MGADFY S E L +G + + I Sbjct: 345 MGADFYESSEEREELRKEGK--PPLGIGEGTTIKRAI 379 >gnl|CDD|180246 PRK05766, rps14P, 30S ribosomal protein S14P; Reviewed. Length = 52 Score = 28.3 bits (64), Expect = 6.3 Identities = 8/12 (66%), Positives = 9/12 (75%) Query: 591 RACFREAASKMG 602 R CFRE A K+G Sbjct: 36 RQCFREVAPKLG 47 >gnl|CDD|128470 smart00173, RAS, Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 Score = 27.9 bits (63), Expect = 9.6 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDG-----AIALLDSNAGVEPQTETVWRQADK 130 DG L I+DT G +F+ ++ +R +G +I S ++ E + R D+ Sbjct: 44 DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR 103 Query: 131 YSVPRVIFCNKMD 143 VP V+ NK D Sbjct: 104 DDVPIVLVGNKCD 116 >gnl|CDD|129479 TIGR00383, corA, magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport. Length = 318 Score = 27.7 bits (62), Expect = 9.7 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%) Query: 182 DLVEMKALLWKNED-LGSSWDVVEIPEDMKDSANSYRD---------KMIESIVELDDSA 231 +L+ ++ LW D L +P ++ RD +MIE+ EL S Sbjct: 183 ELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEMIETYRELLSSL 242 Query: 232 MDSYLQGESFSSDRIRSLIRLGT-ISVKFFP 261 MD YL S ++++ ++++ T +S F P Sbjct: 243 MDLYL---SLVNNKMNEIMKILTVVSTIFIP 270 >gnl|CDD|151421 pfam10974, DUF2804, Protein of unknown function (DUF2804). This is a family of proteins with unknown function. Length = 331 Score = 28.0 bits (63), Expect = 9.9 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Query: 5 CKIEDSRNFGIMAHIDAG---KTTTTERILYYAGKSHKIGEVH 44 +++D R G+ ++ AG T TE L+ GK HK+G V Sbjct: 213 GRLDDGRRIGL--NLAAGVNEGTGATENALWIDGKLHKLGPVE 253 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.134 0.384 Gapped Lambda K H 0.267 0.0704 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 11,378,956 Number of extensions: 753975 Number of successful extensions: 1608 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1509 Number of HSP's successfully gapped: 76 Length of query: 701 Length of database: 5,994,473 Length adjustment: 100 Effective length of query: 601 Effective length of database: 3,833,673 Effective search space: 2304037473 Effective search space used: 2304037473 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (27.3 bits)