BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780264|ref|YP_003064677.1| elongation factor G
[Candidatus Liberibacter asiaticus str. psy62]
         (701 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 1441 bits (3730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/701 (100%), Positives = 701/701 (100%)

Query: 1   MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60
           MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG
Sbjct: 1   MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60

Query: 61  ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120
           ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ
Sbjct: 61  ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120

Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180
           TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV
Sbjct: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180

Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240
           IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES
Sbjct: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240

Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300
           FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS
Sbjct: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300

Query: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360
           NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM
Sbjct: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360

Query: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420
           LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK
Sbjct: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420

Query: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480
           SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV
Sbjct: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480

Query: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540
           GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK
Sbjct: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540

Query: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600
           EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK
Sbjct: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600

Query: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660
           MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV
Sbjct: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660

Query: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA 701
           DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA
Sbjct: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA 701


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 606

 Score = 97.1 bits (240), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 11  RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
           RNF I+AHID GK+T  +R + +      + E    S  +D M+ E+ERGITI + +  +
Sbjct: 12  RNFSIVAHIDHGKSTLADRFIQHC---RGLTEREMSSQVLDNMDIERERGITIKAQTVRL 68

Query: 71  FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
            +   D    +L +IDTPGHVDFT EV RS+   +G++ ++D+  GVE QT     QA  
Sbjct: 69  NYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID 128

Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161
            +   +   NK D   AD  R  + I   +G
Sbjct: 129 NNHEIITVLNKADLPSADPDRVKKQIEETIG 159



 Score = 70.5 bits (171), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 34/256 (13%)

Query: 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSE 303
           DR++  I   TI +     L  S+   +G+  LL+ +V  LPSP                
Sbjct: 148 DRVKKQIE-ETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGA---------- 196

Query: 304 IDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDS--LLNT-VKGKKERVGRM 360
                  ++PL  L      +S++G +   RI +G+++KG S  L+ T  K + ER+G +
Sbjct: 197 -------NAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGIL 249

Query: 361 LQMHSNSREDIDEAYCGDI-IALAGLKE---TTTGDTLCDPSRPIVLERMDFP--EPVIQ 414
               +    DI+  Y G+I + +A +KE   T  GDT+ D S P       F   +PV+ 
Sbjct: 250 ----TPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVF 305

Query: 415 IAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQ---TNLSGMGELHLEIIVDRML 471
             + P      E +  A+++L   D S    ++ ++          +G LHLEII +R+ 
Sbjct: 306 CGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLE 365

Query: 472 REFKVDANVGAPYVSY 487
           REF ++    +P V Y
Sbjct: 366 REFSLNLIGTSPSVVY 381



 Score = 38.5 bits (88), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRG---QIQGQENRSVYVVIDAHVPLS-CMFKY 659
           +L EP ++V +  P EY+G ++     RRG    +   +NR++ V     +PL+  +F +
Sbjct: 407 ELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVY---ELPLNEVIFDF 463

Query: 660 VDSLRSMSQGRGQY 673
            D L+S+S+G   +
Sbjct: 464 YDRLKSVSKGYASF 477


>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 624

 Score = 87.0 bits (214), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 11  RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
           RN  I+AH+D GKTT  + +L  +G       V +    MD  + E+ERGITI +  T++
Sbjct: 20  RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSI 77

Query: 71  FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
            W        ++ I+DTPGH DF  EVER + + +  + L+D+  G  PQT+ V  +A K
Sbjct: 78  VW-----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132

Query: 131 YSVPRVIFCNKMDKMGA 147
             +  ++  NK+D+  A
Sbjct: 133 IGLRPIVVVNKVDRSDA 149



 Score = 81.6 bits (200), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 44/238 (18%)

Query: 260 FPVLCGSS-----------FKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSA 308
           FP+L GS             +++G+ PLL+ +VD++P P+                    
Sbjct: 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-------------------- 213

Query: 309 VDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSL--LNTVKGKKE--RVGRMLQMH 364
           +      M+   +  D F+G +   RI+SG I    ++  L+      E  RV ++L   
Sbjct: 214 ISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFR 273

Query: 365 SNSREDIDEAYCGDIIALAGLKETTTGDTLCDPS--RPIVLERMDFPEPVIQIAIEPK-- 420
              R+ IDEA+ GDI+++AGL + T  DT CDPS   P+  + +D P   +   +     
Sbjct: 274 GIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPL 333

Query: 421 --SKGDQERMSLALSRLVAE---DPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLRE 473
             ++GD+    +   RL  E   + +L++    +     +SG GEL L ++++ M RE
Sbjct: 334 AGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE 391


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)

Query: 15  IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG 74
           IM H+D GKT+  + I        +IG                  GIT    +  V + G
Sbjct: 388 IMGHVDHGKTSLLDAIRKADVAKGEIG------------------GITQHIGAYQVAYQG 429

Query: 75  RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP 134
                K +T +DTPGH  F     R  RVTD A+ +L ++  + PQ       A    V 
Sbjct: 430 -----KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484

Query: 135 RVIFCNKMDKMGADFYR------SVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKA 188
            ++  NK+DK+GAD  +        ++    +G + L +++   +  N   ++D + ++A
Sbjct: 485 IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILLQA 544

Query: 189 LLWKNEDLGSSWD 201
            +    DL +S +
Sbjct: 545 EML---DLKTSIN 554


>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 54.3 bits (129), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)

Query: 3   RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61
           R  + ++S     + H+D GKTT T  I  YY+ +  + G++       D   +E+ RGI
Sbjct: 5   RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57

Query: 62  TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
           TI +A  +      +  ++  + ID PGH D+   +       DGAI +  +  G +PQT
Sbjct: 58  TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112

Query: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148
                + RQ    S+  V++ NK+D +  D
Sbjct: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140


>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 54.3 bits (129), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)

Query: 3   RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61
           R  + ++S     + H+D GKTT T  I  YY+ +  + G++       D   +E+ RGI
Sbjct: 5   RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57

Query: 62  TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
           TI +A  +      +  ++  + ID PGH D+   +       DGAI +  +  G +PQT
Sbjct: 58  TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112

Query: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148
                + RQ    S+  V++ NK+D +  D
Sbjct: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 31.6 bits (70), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 82  LTIIDTPGHVD---------FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYS 132
             I+DT G  D            + E +I      + L+DS AG+ P    +     K +
Sbjct: 52  FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111

Query: 133 VPRVIFCNKMDKMGA--DFY 150
           +P +I  NKMD   A  +FY
Sbjct: 112 IPIIIVSNKMDTRIAQRNFY 131


>gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 190

 Score = 26.2 bits (56), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 197 GSSWDVVEIPEDMKDSANSYRDKMIESIVEL-DDSAMDSYLQ 237
           GSS D   + E ++     Y ++++ S VEL  D  MD YL+
Sbjct: 63  GSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLR 104


>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 325

 Score = 25.4 bits (54), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 152 SVEMISSRLGANPLVI-----QLPV-----GSESNFQGVIDLVEM--KALLWKNEDLGSS 199
           +V+ ++ RL  NPL++     +LP+      S  NF       E+  +A+L + + +   
Sbjct: 115 TVKQMARRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEV 174

Query: 200 WDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKF 259
           W++ ++   +K   +     ++ SIVE + S  D      S   +R    IRL + S   
Sbjct: 175 WEIRDVDHPIKSKEDLV---ILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVI 231

Query: 260 FPVLCG 265
           + +L G
Sbjct: 232 YGILEG 237


>gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 181

 Score = 25.0 bits (53), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 95  MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMD 143
           M+VER+I +  G I ++ SN  V+ Q   +    D+    +VI   K++
Sbjct: 99  MDVERNIFIQSGEINVIASNGYVDFQKRILVLNGDR--ADKVILKEKLN 145


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 25.0 bits (53), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 658 KYVDSLRSMSQGRGQYTMIFDHYAPVPAHV 687
           KY D +R++ Q    Y +   H   VP HV
Sbjct: 5   KYSDLMRNVLQSAQTYALAQGHQNLVPEHV 34


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.134    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,820
Number of Sequences: 1233
Number of extensions: 18309
Number of successful extensions: 75
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 18
length of query: 701
length of database: 328,796
effective HSP length: 80
effective length of query: 621
effective length of database: 230,156
effective search space: 142926876
effective search space used: 142926876
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)