BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] (701 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 1441 bits (3730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 701/701 (100%), Positives = 701/701 (100%) Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG Sbjct: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60 Query: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ Sbjct: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120 Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV Sbjct: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180 Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES Sbjct: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS Sbjct: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300 Query: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM Sbjct: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360 Query: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK Sbjct: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420 Query: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV Sbjct: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480 Query: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK Sbjct: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540 Query: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK Sbjct: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600 Query: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV Sbjct: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660 Query: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA 701 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA Sbjct: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYSVVKSA 701 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 97.1 bits (240), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RNF I+AHID GK+T +R + + + E S +D M+ E+ERGITI + + + Sbjct: 12 RNFSIVAHIDHGKSTLADRFIQHC---RGLTEREMSSQVLDNMDIERERGITIKAQTVRL 68 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 + D +L +IDTPGHVDFT EV RS+ +G++ ++D+ GVE QT QA Sbjct: 69 NYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID 128 Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 + + NK D AD R + I +G Sbjct: 129 NNHEIITVLNKADLPSADPDRVKKQIEETIG 159 Score = 70.5 bits (171), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 34/256 (13%) Query: 244 DRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSE 303 DR++ I TI + L S+ +G+ LL+ +V LPSP Sbjct: 148 DRVKKQIE-ETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGA---------- 196 Query: 304 IDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDS--LLNT-VKGKKERVGRM 360 ++PL L +S++G + RI +G+++KG S L+ T K + ER+G + Sbjct: 197 -------NAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGIL 249 Query: 361 LQMHSNSREDIDEAYCGDI-IALAGLKE---TTTGDTLCDPSRPIVLERMDFP--EPVIQ 414 + DI+ Y G+I + +A +KE T GDT+ D S P F +PV+ Sbjct: 250 ----TPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVF 305 Query: 415 IAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQ---TNLSGMGELHLEIIVDRML 471 + P E + A+++L D S ++ ++ +G LHLEII +R+ Sbjct: 306 CGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLE 365 Query: 472 REFKVDANVGAPYVSY 487 REF ++ +P V Y Sbjct: 366 REFSLNLIGTSPSVVY 381 Score = 38.5 bits (88), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRG---QIQGQENRSVYVVIDAHVPLS-CMFKY 659 +L EP ++V + P EY+G ++ RRG + +NR++ V +PL+ +F + Sbjct: 407 ELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVY---ELPLNEVIFDF 463 Query: 660 VDSLRSMSQGRGQY 673 D L+S+S+G + Sbjct: 464 YDRLKSVSKGYASF 477 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 87.0 bits (214), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 7/137 (5%) Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70 RN I+AH+D GKTT + +L +G V + MD + E+ERGITI + T++ Sbjct: 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSI 77 Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130 W ++ I+DTPGH DF EVER + + + + L+D+ G PQT+ V +A K Sbjct: 78 VW-----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132 Query: 131 YSVPRVIFCNKMDKMGA 147 + ++ NK+D+ A Sbjct: 133 IGLRPIVVVNKVDRSDA 149 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 44/238 (18%) Query: 260 FPVLCGSS-----------FKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSA 308 FP+L GS +++G+ PLL+ +VD++P P+ Sbjct: 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-------------------- 213 Query: 309 VDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSL--LNTVKGKKE--RVGRMLQMH 364 + M+ + D F+G + RI+SG I ++ L+ E RV ++L Sbjct: 214 ISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFR 273 Query: 365 SNSREDIDEAYCGDIIALAGLKETTTGDTLCDPS--RPIVLERMDFPEPVIQIAIEPK-- 420 R+ IDEA+ GDI+++AGL + T DT CDPS P+ + +D P + + Sbjct: 274 GIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPL 333 Query: 421 --SKGDQERMSLALSRLVAE---DPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLRE 473 ++GD+ + RL E + +L++ + +SG GEL L ++++ M RE Sbjct: 334 AGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE 391 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%) Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG 74 IM H+D GKT+ + I +IG GIT + V + G Sbjct: 388 IMGHVDHGKTSLLDAIRKADVAKGEIG------------------GITQHIGAYQVAYQG 429 Query: 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP 134 K +T +DTPGH F R RVTD A+ +L ++ + PQ A V Sbjct: 430 -----KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484 Query: 135 RVIFCNKMDKMGADFYR------SVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKA 188 ++ NK+DK+GAD + ++ +G + L +++ + N ++D + ++A Sbjct: 485 IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILLQA 544 Query: 189 LLWKNEDLGSSWD 201 + DL +S + Sbjct: 545 EML---DLKTSIN 554 >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 54.3 bits (129), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%) Query: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61 R + ++S + H+D GKTT T I YY+ + + G++ D +E+ RGI Sbjct: 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57 Query: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 TI +A + + ++ + ID PGH D+ + DGAI + + G +PQT Sbjct: 58 TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112 Query: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148 + RQ S+ V++ NK+D + D Sbjct: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 54.3 bits (129), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%) Query: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERIL-YYAGKSHKIGEVHDGSATMDWMEQEQERGI 61 R + ++S + H+D GKTT T I YY+ + + G++ D +E+ RGI Sbjct: 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGI 57 Query: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121 TI +A + + ++ + ID PGH D+ + DGAI + + G +PQT Sbjct: 58 TIATAHVSY-----ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQT 112 Query: 122 ET---VWRQADKYSVPRVIFCNKMDKMGAD 148 + RQ S+ V++ NK+D + D Sbjct: 113 REHILLARQIGISSI--VVYMNKVDAVDDD 140 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 31.6 bits (70), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Query: 82 LTIIDTPGHVD---------FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYS 132 I+DT G D + E +I + L+DS AG+ P + K + Sbjct: 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 Query: 133 VPRVIFCNKMDKMGA--DFY 150 +P +I NKMD A +FY Sbjct: 112 IPIIIVSNKMDTRIAQRNFY 131 >gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 26.2 bits (56), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 197 GSSWDVVEIPEDMKDSANSYRDKMIESIVEL-DDSAMDSYLQ 237 GSS D + E ++ Y ++++ S VEL D MD YL+ Sbjct: 63 GSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLR 104 >gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 325 Score = 25.4 bits (54), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 152 SVEMISSRLGANPLVI-----QLPV-----GSESNFQGVIDLVEM--KALLWKNEDLGSS 199 +V+ ++ RL NPL++ +LP+ S NF E+ +A+L + + + Sbjct: 115 TVKQMARRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEV 174 Query: 200 WDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKF 259 W++ ++ +K + ++ SIVE + S D S +R IRL + S Sbjct: 175 WEIRDVDHPIKSKEDLV---ILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVI 231 Query: 260 FPVLCG 265 + +L G Sbjct: 232 YGILEG 237 >gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 181 Score = 25.0 bits (53), Expect = 4.1, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 95 MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMD 143 M+VER+I + G I ++ SN V+ Q + D+ +VI K++ Sbjct: 99 MDVERNIFIQSGEINVIASNGYVDFQKRILVLNGDR--ADKVILKEKLN 145 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 25.0 bits (53), Expect = 4.7, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 658 KYVDSLRSMSQGRGQYTMIFDHYAPVPAHV 687 KY D +R++ Q Y + H VP HV Sbjct: 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHV 34 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.134 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,820 Number of Sequences: 1233 Number of extensions: 18309 Number of successful extensions: 75 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 18 length of query: 701 length of database: 328,796 effective HSP length: 80 effective length of query: 621 effective length of database: 230,156 effective search space: 142926876 effective search space used: 142926876 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)