254780265
30S ribosomal protein S7
GeneID in NCBI database: | 8209246 | Locus tag: | CLIBASIA_00750 |
Protein GI in NCBI database: | 254780265 | Protein Accession: | YP_003064678.1 |
Gene range: | -(146876, 147346) | Protein Length: | 156aa |
Gene description: | 30S ribosomal protein S7 | ||
COG prediction: | [J] Ribosomal protein S7 | ||
KEGG prediction: | rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 | ||
SEED prediction: | SSU ribosomal protein S7p (S5e) | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome SSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | |||
222148362 | 156 | 30S ribosomal protein S7 [Agrobacterium vitis S4] Lengt | 1 | 2e-60 | |
90417767 | 156 | ribosomal protein S7 [Aurantimonas manganoxydans SI85-9 | 1 | 7e-60 | |
328543354 | 156 | 30S ribosomal protein S7 [polymorphum gilvum SL003B-26A | 1 | 9e-60 | |
153009282 | 156 | 30S ribosomal protein S7 [Ochrobactrum anthropi ATCC 49 | 1 | 1e-59 | |
15965105 | 156 | 30S ribosomal protein S7 [Sinorhizobium meliloti 1021] | 1 | 2e-59 | |
319408769 | 156 | 30S ribosomal protein S7 [Bartonella schoenbuchensis R1 | 1 | 2e-59 | |
114704480 | 156 | 30S ribosomal protein S7 [Fulvimarina pelagi HTCC2506] | 1 | 2e-59 | |
239832126 | 156 | ribosomal protein S7 [Ochrobactrum intermedium LMG 3301 | 1 | 3e-59 | |
13470548 | 156 | 30S ribosomal protein S7 [Mesorhizobium loti MAFF303099 | 1 | 3e-59 | |
118591188 | 156 | 30S ribosomal protein S7 [Stappia aggregata IAM 12614] | 1 | 4e-59 |
>gi|222148362|ref|YP_002549319.1| 30S ribosomal protein S7 [Agrobacterium vitis S4] Length = 156 | Back alignment and organism information |
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Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 111/156 (71%), Positives = 130/156 (83%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 MSRR +A RE+ PDPKF D VV KFMNAIM GKKSVA SIVYGAFD+VE K K +P+A Sbjct: 1 MSRRHKAEKREINPDPKFGDLVVTKFMNAIMLHGKKSVAESIVYGAFDVVEAKSKAEPIA 60 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120 +F QAL NV P EVR+RRVGGA Y VP ++ +R QALAIRWLI+AARKRNETTM+DRL Sbjct: 61 IFHQALENVAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIIAARKRNETTMVDRL 120 Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 GE++DA+NNRG AV+KRE+THK+A+ANRAFSHYRW Sbjct: 121 SGELLDASNNRGSAVKKREDTHKMADANRAFSHYRW 156 |
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|90417767|ref|ZP_01225679.1| ribosomal protein S7 [Aurantimonas manganoxydans SI85-9A1] Length = 156 | Back alignment and organism information |
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>gi|328543354|ref|YP_004303463.1| 30S ribosomal protein S7 [polymorphum gilvum SL003B-26A1] Length = 156 | Back alignment and organism information |
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>gi|153009282|ref|YP_001370497.1| 30S ribosomal protein S7 [Ochrobactrum anthropi ATCC 49188] Length = 156 | Back alignment and organism information |
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>gi|15965105|ref|NP_385458.1| 30S ribosomal protein S7 [Sinorhizobium meliloti 1021] Length = 156 | Back alignment and organism information |
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>gi|319408769|emb|CBI82426.1| 30S ribosomal protein S7 [Bartonella schoenbuchensis R1] Length = 156 | Back alignment and organism information |
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>gi|114704480|ref|ZP_01437388.1| 30S ribosomal protein S7 [Fulvimarina pelagi HTCC2506] Length = 156 | Back alignment and organism information |
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>gi|239832126|ref|ZP_04680455.1| ribosomal protein S7 [Ochrobactrum intermedium LMG 3301] Length = 156 | Back alignment and organism information |
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>gi|13470548|ref|NP_102116.1| 30S ribosomal protein S7 [Mesorhizobium loti MAFF303099] Length = 156 | Back alignment and organism information |
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>gi|118591188|ref|ZP_01548587.1| 30S ribosomal protein S7 [Stappia aggregata IAM 12614] Length = 156 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
PRK05302 | 156 | PRK05302, PRK05302, 30S ribosomal protein S7; Validated | 7e-71 | |
TIGR01029 | 154 | TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/o | 1e-55 | |
CHL00053 | 155 | CHL00053, rps7, ribosomal protein S7 | 1e-49 | |
COG0049 | 148 | COG0049, RpsG, Ribosomal protein S7 [Translation, ribos | 6e-48 | |
KOG3291 | 208 | KOG3291, KOG3291, KOG3291, Ribosomal protein S7 [Transl | 3e-28 | |
PRK04027 | 195 | PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed | 1e-15 | |
TIGR01028 | 186 | TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5 | 1e-14 | |
PTZ00091 | 193 | PTZ00091, PTZ00091, 40S ribosomal protein S5; Provision | 1e-08 | |
pfam00177 | 149 | pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e | 7e-55 |
>gnl|CDD|180003 PRK05302, PRK05302, 30S ribosomal protein S7; Validated | Back alignment and domain information |
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>gnl|CDD|162164 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle | Back alignment and domain information |
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>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7 | Back alignment and domain information |
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>gnl|CDD|30398 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|38501 KOG3291, KOG3291, KOG3291, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed | Back alignment and domain information |
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>gnl|CDD|130100 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic) | Back alignment and domain information |
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>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional | Back alignment and domain information |
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>gnl|CDD|143943 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
TIGR01029 | 159 | rpsG_bact ribosomal protein S7; InterPro: IPR005717 Rib | 100.0 | |
PRK05302 | 156 | 30S ribosomal protein S7; Validated | 100.0 | |
CHL00053 | 155 | rps7 ribosomal protein S7 | 100.0 | |
pfam00177 | 149 | Ribosomal_S7 Ribosomal protein S7p/S5e. This family con | 100.0 | |
COG0049 | 148 | RpsG Ribosomal protein S7 [Translation, ribosomal struc | 100.0 | |
PTZ00091 | 191 | 40S ribosomal protein S5; Provisional | 100.0 | |
PRK04027 | 195 | 30S ribosomal protein S7P; Reviewed | 100.0 | |
KOG3291 | 208 | consensus | 100.0 | |
TIGR01028 | 206 | S7_S5_E_A ribosomal protein S7; InterPro: IPR005716 Rib | 100.0 |
>TIGR01029 rpsG_bact ribosomal protein S7; InterPro: IPR005717 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PRK05302 30S ribosomal protein S7; Validated | Back alignment and domain information |
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>CHL00053 rps7 ribosomal protein S7 | Back alignment and domain information |
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>pfam00177 Ribosomal_S7 Ribosomal protein S7p/S5e | Back alignment and domain information |
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>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PTZ00091 40S ribosomal protein S5; Provisional | Back alignment and domain information |
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>PRK04027 30S ribosomal protein S7P; Reviewed | Back alignment and domain information |
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>KOG3291 consensus | Back alignment and domain information |
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>TIGR01028 S7_S5_E_A ribosomal protein S7; InterPro: IPR005716 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
1hus_A | 155 | Ribosomal Protein S7 Length = 155 | 6e-56 | |
1vs5_G | 179 | Crystal Structure Of The Bacterial Ribosome From Es | 4e-55 | |
3gty_S | 149 | Promiscuous Substrate Recognition In Folding And As | 4e-54 | |
1p6g_G | 178 | Real Space Refined Coordinates Of The 30s Subunit F | 4e-54 | |
1fjg_G | 156 | Structure Of The Thermus Thermophilus 30s Ribosomal | 3e-51 | |
1i94_G | 155 | Crystal Structures Of The Small Ribosomal Subunit W | 2e-50 | |
3bbn_G | 155 | Homology Model For The Spinach Chloroplast 30s Subu | 3e-49 | |
1rss_A | 151 | Ribosomal Protein S7 From Thermus Thermophilus Leng | 4e-49 | |
3ofo_G | 151 | Crystal Structure Of The E. Coli Ribosome Bound To | 6e-49 | |
3fih_G | 150 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 3e-48 | |
1x18_F | 154 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 3e-48 | |
1fka_G | 151 | Structure Of Functionally Activated Small Ribosomal | 7e-47 | |
2gy9_G | 137 | Structure Of The 30s Subunit Of A Pre-Translocation | 4e-45 | |
1eg0_D | 146 | Fitting Of Components With Known Structure Into An | 7e-44 | |
1qd7_F | 135 | Partial Model For 30s Ribosomal Subunit Length = 13 | 2e-40 | |
2zkq_g | 204 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-28 | |
3izb_F | 225 | Localization Of The Small Subunit Ribosomal Protein | 2e-28 | |
3iz6_F | 200 | Localization Of The Small Subunit Ribosomal Protein | 8e-28 | |
3jyv_G | 186 | Structure Of The 40s Rrna And Proteins And PE TRNA | 7e-27 | |
1s1h_G | 150 | Structure Of The Ribosomal 80s-Eef2-Sordarin Comple | 7e-26 | |
2xzm_G | 200 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-25 | |
1iqv_A | 218 | Crystal Structure Analysis Of The Archaebacterial R | 2e-19 |
>gi|157831399|pdb|1HUS|A Chain A, Ribosomal Protein S7 Length = 155 | Back alignment and structure |
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 83/155 (53%), Positives = 104/155 (67%) Query: 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61 RR R+VLPDP ++ +V + +N I GKKS A I+Y AFD++ ++ KDP + Sbjct: 1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEV 60 Query: 62 FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121 F QAL NV P EVR RRVGGA Y VP E+ R +L +RWL+ AR RNE T +RL Sbjct: 61 FEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLA 120 Query: 122 GEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 EI DAANN G AV+KRE+THK AEAN+AF+HYRW Sbjct: 121 NEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155 |
gi|116666554|pdb|1VS5|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 | Back alignment and structure |
>gi|281500762|pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149 | Back alignment and structure |
>gi|33357884|pdb|1P6G|G Chain G, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 | Back alignment and structure |
gi|10835591|pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156 | Back alignment and structure |
>gi|14278536|pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155 | Back alignment and structure |
gi|188036208|pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. Length = 155 | Back alignment and structure |
>gi|157833748|pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151 | Back alignment and structure |
>gi|308387971|pdb|3OFO|G Chain G, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 151 | Back alignment and structure |
>gi|224510728|pdb|3FIH|G Chain G, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 | Back alignment and structure |
>gi|73536331|pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 154 | Back alignment and structure |
>gi|10120570|pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151 | Back alignment and structure |
>gi|116667416|pdb|2GY9|G Chain G, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 137 | Back alignment and structure |
>gi|6137690|pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135 | Back alignment and structure |
gi|187609260|pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204 | Back alignment and structure |
gi|313103670|pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 225 | Back alignment and structure |
gi|313103633|pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 200 | Back alignment and structure |
>gi|281500812|pdb|3JYV|G Chain G, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 186 | Back alignment and structure |
>gi|49258826|pdb|1S1H|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 150 | Back alignment and structure |
gi|319443362|pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 200 | Back alignment and structure |
gi|15826617|pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial Ribosomal Protein S7 Length = 218 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
3gty_S | 149 | TF, 30S ribosomal protein S7; chaperone-client complex, | 4e-50 | |
3i1m_G | 179 | 30S ribosomal protein S7; ribosome structure, protein-R | 1e-49 | |
1hus_A | 155 | Ribosomal protein S7; RNA-binding protein, decoding cen | 3e-49 | |
3ofp_G | 150 | 30S ribosomal protein S7; protein biosynthesis, ribosom | 5e-49 | |
3bbn_G | 155 | Ribosomal protein S7; small ribosomal subunit, spinach | 9e-49 | |
1rss_A | 151 | Ribosomal protein S7; RNA-binding, translation; 1.90A { | 4e-47 | |
1iqv_A | 218 | Ribosomal protein S7; RNA-binding, decoding center, hel | 2e-38 | |
2zkq_g | 204 | 40S ribosomal protein S5E; protein-RNA complex, 40S rib | 7e-32 | |
2noq_F | 150 | L10A, 40S ribosomal protein S5; IRES RNA, ribosome, tra | 2e-30 |
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} Length = 149 | Back alignment and structure |
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Score = 192 bits (489), Expect = 4e-50 Identities = 80/147 (54%), Positives = 109/147 (74%) Query: 10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69 R++ PDP F D +VAK +N +M+ GKK++A IVYGAFD++ +K KKDP+ +FRQA+ NV Sbjct: 3 RQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENV 62 Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129 P EVR RRVGGA Y VP E+ R +LA+RW++ AAR + M ++L EII A N Sbjct: 63 KPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYN 122 Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156 N G A++K+E+TH++AEANRAF+HYRW Sbjct: 123 NTGTAIKKKEDTHRMAEANRAFAHYRW 149 |
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ... Length = 179 | Back alignment and structure |
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>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155 | Back alignment and structure |
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>3ofp_G 30S ribosomal protein S7; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_G* 2wwl_G 3ofo_G 2gy9_G 2gyb_G Length = 150 | Back alignment and structure |
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>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155 | Back alignment and structure |
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>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 2vqe_G* ... Length = 151 | Back alignment and structure |
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>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218 | Back alignment and structure |
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>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 204 | Back alignment and structure |
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>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G Length = 150 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
3i1m_G | 179 | 30S ribosomal protein S7; ribosome structure, protein-R | 100.0 | |
1hus_A | 155 | Ribosomal protein S7; RNA-binding protein, decoding cen | 100.0 | |
1rss_A | 151 | Ribosomal protein S7; RNA-binding, translation; 1.90A { | 100.0 | |
3bbn_G | 155 | Ribosomal protein S7; small ribosomal subunit, spinach | 100.0 | |
3gty_S | 149 | TF, 30S ribosomal protein S7; chaperone-client complex, | 100.0 | |
3ofp_G | 150 | 30S ribosomal protein S7; protein biosynthesis, ribosom | 100.0 | |
2noq_F | 150 | L10A, 40S ribosomal protein S5; IRES RNA, ribosome, tra | 100.0 | |
2zkq_g | 204 | 40S ribosomal protein S5E; protein-RNA complex, 40S rib | 100.0 | |
1iqv_A | 218 | Ribosomal protein S7; RNA-binding, decoding center, hel | 100.0 |
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3kc4_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* ... | Back alignment and structure |
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Probab=100.00 E-value=0 Score=391.86 Aligned_cols=156 Identities=51% Similarity=0.855 Sum_probs=155.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) ||||+.++||.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++ T Consensus 1 m~R~~~~~kr~~~pD~~y~~~lV~kliN~lMk~GKK~~A~kIv~~a~~~I~~~t~~npi~vl~~AI~N~~P~~evk~~r~ 80 (179) T 3i1m_G 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV 80 (179) T ss_dssp -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEE T ss_conf 96999998787999977587899999999876645999999999999888874367425899999993799627887750 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 4630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||++||||+||++.|+++||||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++||||||||| T Consensus 81 GG~~~qvPv~i~~~rr~~lAirWil~aar~r~~k~~~~~La~EIi~A~~~~g~aikKK~elhK~A~aNRa~ahyRW 156 (179) T 3i1m_G 81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156 (179) T ss_dssp SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC---- T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 7722222022282889999999999999865999899999999999995899766519999999999899998998 |
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 | Back alignment and structure |
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>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 2vqe_G* ... | Back alignment and structure |
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>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 | Back alignment and structure |
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>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} | Back alignment and structure |
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>3ofp_G 30S ribosomal protein S7; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_G* 2wwl_G 3ofo_G 2gy9_G 2gyb_G | Back alignment and structure |
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>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G | Back alignment and structure |
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>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_G* | Back alignment and structure |
---|
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | |||
d1rssa_ | 145 | a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilu | 5e-47 | |
d2qalg1 | 150 | a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia co | 1e-45 | |
d1husa_ | 139 | a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearother | 3e-41 | |
d1iqva_ | 201 | a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus | 4e-32 |
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145 | Back information, alignment and structure |
---|
class: All alpha proteins fold: Ribosomal protein S7 superfamily: Ribosomal protein S7 family: Ribosomal protein S7 domain: Ribosomal protein S7 species: Thermus thermophilus [TaxId: 274] Score = 180 bits (458), Expect = 5e-47 Identities = 67/145 (46%), Positives = 103/145 (71%) Query: 12 VLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71 + PD + D +V F+N IM GKK++A I Y A ++++K ++P+ +F+QA+ NV P Sbjct: 1 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKP 60 Query: 72 QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNR 131 + EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E R+ E++DAA + Sbjct: 61 RMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGK 120 Query: 132 GVAVRKREETHKVAEANRAFSHYRW 156 G AV+K+E+ ++AEANRA++HYRW Sbjct: 121 GGAVKKKEDVERMAEANRAYAHYRW 145 |
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150 | Back information, alignment and structure |
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>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 | Back information, alignment and structure |
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>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
d1rssa_ | 145 | Ribosomal protein S7 {Thermus thermophilus [TaxId: 274] | 100.0 | |
d2qalg1 | 150 | Ribosomal protein S7 {Escherichia coli [TaxId: 562]} | 100.0 | |
d1husa_ | 139 | Ribosomal protein S7 {Bacillus stearothermophilus [TaxI | 100.0 | |
d1iqva_ | 201 | Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [T | 100.0 |
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: All alpha proteins fold: Ribosomal protein S7 superfamily: Ribosomal protein S7 family: Ribosomal protein S7 domain: Ribosomal protein S7 species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=368.01 Aligned_cols=145 Identities=46% Similarity=0.849 Sum_probs=143.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEEC Q ss_conf 79997437879999999997669599999999999986674248863899999998427540477875246300000104 Q gi|254780265|r 12 VLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGEI 91 (156) Q Consensus 12 ~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~i 91 (156) +.|||+|+|++|++|||+||++|||++|++|++++|++|++++++||+++|++||+|++|.+||+++++||++||||+++ T Consensus 1 ~~pdp~y~d~lv~k~in~lMk~GKK~~A~~iv~~al~~i~~~~~~npi~vl~~Ai~n~~P~~evk~~r~gG~~~~vPv~i 80 (145) T d1rssa_ 1 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEV 80 (145) T ss_dssp CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEEC T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECC T ss_conf 98998779889999999987624699999999999998887135760899999986352102014466377002530046 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 85799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 92 TSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 92 ~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ++.||++||||||+++|++|++++|+++||+||++|++|+|.|++||+|+||+|++||||+|||| T Consensus 81 ~~~rr~~lAirwil~aa~~r~~k~~~~~La~Eii~A~~~~g~aikkK~e~hK~A~aNRa~ah~Rw 145 (145) T d1rssa_ 81 SPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 145 (145) T ss_dssp CHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC T ss_conf 87899999999999999864999899999999999982888654408889999999774611379 |
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter | ||
3bbn_G_ | 155 | (G:) Ribosomal protein S7; small ribosomal subunit | 5e-46 | |
3i1m_G_ | 179 | (G:) 30S ribosomal protein S7; ribosome structure, | 2e-45 | |
3gty_S_ | 149 | (S:) TF, 30S ribosomal protein S7; chaperone-clien | 6e-45 | |
1hus_A_ | 155 | (A:) Ribosomal protein S7; RNA-binding protein, de | 7e-44 | |
2noq_F_ | 150 | (F:) L10A, 40S ribosomal protein S5; IRES RNA, rib | 2e-39 | |
2zkq_g_ | 204 | (g:) 40S ribosomal protein S5E; protein-RNA comple | 9e-39 | |
1iqv_A_ | 218 | (A:) Ribosomal protein S7; RNA-binding, decoding c | 1e-35 | |
1rss_A_ | 151 | (A:) Ribosomal protein S7; RNA-binding, translatio | 1e-32 |
>3bbn_G (G:) Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 155 | Back alignment and structure |
---|
Score = 177 bits (451), Expect = 5e-46 Identities = 72/155 (46%), Positives = 103/155 (66%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 MSRR + DP + + +V +N I+ GKKS+A I+Y A +++K + +P++ Sbjct: 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120 + RQA+ VTP V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR M +L Sbjct: 61 VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120 Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155 E++DAA G AVRK+EETH++AEANRAF+H+R Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155 |
>3i1m_G (G:) 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ...Length = 179 | Back alignment and structure |
---|
>3gty_S (S:) TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima}Length = 149 | Back alignment and structure |
---|
>1hus_A (A:) Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus}Length = 155 | Back alignment and structure |
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>2noq_F (F:) L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_GLength = 150 | Back alignment and structure |
---|
>2zkq_g (g:) 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 204 | Back alignment and structure |
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>1iqv_A (A:) Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii}Length = 218 | Back alignment and structure |
---|
>1rss_A (A:) Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus}Length = 151 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 156 | 30S ribosomal protein S7 [Candidatus Liberibacter asiat | ||
3i1m_G_ | 179 | 30S ribosomal protein S7; ribosome structure, prot | 100.0 | |
1hus_A_ | 155 | Ribosomal protein S7; RNA-binding protein, decodin | 100.0 | |
3bbn_G_ | 155 | Ribosomal protein S7; small ribosomal subunit, spi | 100.0 | |
3gty_S_ | 149 | TF, 30S ribosomal protein S7; chaperone-client com | 100.0 | |
2noq_F_ | 150 | L10A, 40S ribosomal protein S5; IRES RNA, ribosome | 100.0 | |
2zkq_g_ | 204 | 40S ribosomal protein S5E; protein-RNA complex, 40 | 100.0 | |
1rss_A_ | 151 | Ribosomal protein S7; RNA-binding, translation; 1. | 100.0 | |
1iqv_A_ | 218 | Ribosomal protein S7; RNA-binding, decoding center | 100.0 |
>3i1m_G (G:) 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ... | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=371.70 Aligned_cols=156 Identities=51% Similarity=0.855 Sum_probs=155.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) ||||++++++..+|||+|+|++|++|||++|++|||++|++|++++|++|+..|++||+++|++||+|++|.+||+++++ T Consensus 1 Msr~~~~~k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~kIv~~al~~I~~~t~~nPi~il~~Ai~Nv~P~~ev~~ik~ 80 (179) T 3i1m_G 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV 80 (179) T ss_dssp -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 97999998787999976587999999999875641999999999999998873467640689999985356057886641 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 4630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||++||||++|++.|++++||+||+++|+++++++|+++||+||++|++++|.|++||||+||+|++||||+|||| T Consensus 81 gG~~y~vP~~i~~~rr~~lAirWll~~a~~r~~k~~~~~La~Eii~A~~~~G~aikKK~elhK~A~aNRa~ah~Rw 156 (179) T 3i1m_G 81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156 (179) T ss_dssp SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC---- T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 7744323232381889999999999988743899899999999999994889666628999999999999998898 |
>1hus_A (A:) Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} | Back alignment and structure |
---|
>3bbn_G (G:) Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
---|
>3gty_S (S:) TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} | Back alignment and structure |
---|
>2noq_F (F:) L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G | Back alignment and structure |
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>2zkq_g (g:) 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
---|
>1rss_A (A:) Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} | Back alignment and structure |
---|
>1iqv_A (A:) Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
---|