254780265

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 130/156 (83%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR +A  RE+ PDPKF D VV KFMNAIM  GKKSVA SIVYGAFD+VE K K +P+A
Sbjct: 1   MSRRHKAEKREINPDPKFGDLVVTKFMNAIMLHGKKSVAESIVYGAFDVVEAKSKAEPIA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F QAL NV P  EVR+RRVGGA Y VP ++  +R QALAIRWLI+AARKRNETTM+DRL
Sbjct: 61  IFHQALENVAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIIAARKRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DA+NNRG AV+KRE+THK+A+ANRAFSHYRW
Sbjct: 121 SGELLDASNNRGSAVKKREDTHKMADANRAFSHYRW 156

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  233 bits (594), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 129/156 (82%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR RA  RE+ PDPKF D +V+KFMNA+MY GKKSVA  IVYGAFD V +K ++D VA
Sbjct: 1   MSRRHRAEKREINPDPKFGDLIVSKFMNAVMYDGKKSVAERIVYGAFDAVHEKSRQDAVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F QAL N++P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AAR RNETTM+DRL
Sbjct: 61  IFHQALENISPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLITAARNRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++AEANRAFSHYRW
Sbjct: 121 SGELMDAANNRGTAVKKREDTHRMAEANRAFSHYRW 156

Species: Aurantimonas manganoxydans
Genus: Aurantimonas
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  233 bits (593), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 130/156 (83%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR RA  RE++PDPKF D VV KFMN+IM  GKKSVA  IVYGAFD++EKK +++P+ 
Sbjct: 1   MSRRHRAEKREIIPDPKFGDIVVTKFMNSIMLDGKKSVAERIVYGAFDVIEKKTRENPIE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F  AL NV PQ EVR+RRVGGA Y VP E+ S+R QALAIRWLI AAR RNETTM+DRL
Sbjct: 61  VFHAALENVMPQVEVRSRRVGGATYQVPVEVRSERRQALAIRWLISAARNRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++A+ANRAFSHYRW
Sbjct: 121 SGEMLDAANNRGSAVKKREDTHRMADANRAFSHYRW 156

Species: Polymorphum gilvum
Genus: 
Family: 
Order: 
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  232 bits (591), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 127/156 (81%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR +A  RE+ PDPKF D V+ KFMNA+M  GKKSVA SIVYGA D++E K K +PVA
Sbjct: 1   MSRRHKAEKREINPDPKFGDLVITKFMNAVMLHGKKSVAESIVYGALDVIEAKAKSEPVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           LF QAL NV P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AAR RNETTMIDRL
Sbjct: 61  LFHQALDNVAPHIEVRSRRVGGATYQVPVDVRPERRQALAIRWLINAARGRNETTMIDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++AEANRAFSHYRW
Sbjct: 121 SGELLDAANNRGSAVKKREDTHRMAEANRAFSHYRW 156

Species: Ochrobactrum anthropi
Genus: Ochrobactrum
Family: Brucellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  231 bits (590), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR RA  RE+ PDPKF D VV KFMNAIM  GKKSVA SIVYGAFD V+ K K++PVA
Sbjct: 1   MSRRHRAEKREINPDPKFGDLVVTKFMNAIMLHGKKSVAESIVYGAFDAVQSKLKQEPVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F  AL N+ P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AARKRNETTM+DRL
Sbjct: 61  VFHSALDNIAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIAAARKRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+THK+A+ANRAFSHYRW
Sbjct: 121 CGELMDAANNRGSAVKKREDTHKMADANRAFSHYRW 156

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 125/156 (80%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR RA  RE+ PDPKF D V+ KFMNAIM+ GKKSVA  IVYGA D VE K K DPVA
Sbjct: 1   MSRRHRAEKREINPDPKFGDLVITKFMNAIMFDGKKSVAERIVYGALDAVESKVKTDPVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           LF QAL NV P  EVR+RRVGGA Y VP ++   R QALAIRWLI+AAR RNETTMIDRL
Sbjct: 61  LFHQALENVAPHIEVRSRRVGGATYQVPIDVRPDRRQALAIRWLIVAARGRNETTMIDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+ H++AEANRAFSHYRW
Sbjct: 121 SGELVDAANNRGSAVKKREDVHRMAEANRAFSHYRW 156

Species: Bartonella schoenbuchensis
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 129/156 (82%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR  A  RE+ PDPKF D VV+KFMNA+MY GKKSVA  IVYGAFD V++K +++PVA
Sbjct: 1   MSRRHSAEKREINPDPKFGDLVVSKFMNAVMYDGKKSVAERIVYGAFDTVQEKTRQEPVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F QAL N+ P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AAR RNETTM+DRL
Sbjct: 61  IFHQALENIAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLITAARNRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++A+ANRAFSHYRW
Sbjct: 121 SGELMDAANNRGTAVKKREDTHRMADANRAFSHYRW 156

Species: Fulvimarina pelagi
Genus: Fulvimarina
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  231 bits (589), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 126/156 (80%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR +A  RE+ PDPKF D V+ KFMNA+M  GKKSVA SIVYGA D +E K K +PVA
Sbjct: 1   MSRRHKAEKREINPDPKFGDLVITKFMNAVMLHGKKSVAESIVYGALDAIEAKAKSEPVA 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           LF QAL NV P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AAR RNETTMIDRL
Sbjct: 61  LFHQALDNVAPHIEVRSRRVGGATYQVPVDVRPERRQALAIRWLINAARGRNETTMIDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++AEANRAFSHYRW
Sbjct: 121 SGELLDAANNRGSAVKKREDTHRMAEANRAFSHYRW 156

Species: Ochrobactrum intermedium
Genus: Ochrobactrum
Family: Brucellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 126/156 (80%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR  A  RE+ PDPKF D +V KFMNA+MY GKKSVA +IVYGA D V+ K K++PV 
Sbjct: 1   MSRRHSAEKREINPDPKFGDLIVTKFMNAVMYDGKKSVAETIVYGALDQVQSKTKQEPVT 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F QAL NV P  EVR+RRVGGA Y VP ++  +R QALAIRWLI AAR RNETTMIDRL
Sbjct: 61  VFHQALDNVAPHVEVRSRRVGGATYQVPVDVRPERRQALAIRWLIAAARNRNETTMIDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+THK+AEANRAF+HYRW
Sbjct: 121 SGELMDAANNRGTAVKKREDTHKMAEANRAFAHYRW 156

Species: Mesorhizobium loti
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  230 bits (587), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 127/156 (81%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR RA  RE+ PDPKF D VV KFMN+IMY GKKS A  IVYGAFD+VE K +++P+ 
Sbjct: 1   MSRRHRAEKREINPDPKFGDTVVTKFMNSIMYDGKKSTAERIVYGAFDVVENKTRENPIE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F  AL NV PQ EVR+RRVGGA Y VP E+ + R QALAIRWLI AAR RNETTM+DRL
Sbjct: 61  VFHAALENVMPQVEVRSRRVGGATYQVPVEVRTDRRQALAIRWLITAARNRNETTMVDRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            GE++DAANNRG AV+KRE+TH++A+ANRAFSHYRW
Sbjct: 121 SGELLDAANNRGTAVKKREDTHRMADANRAFSHYRW 156

Species: Labrenzia aggregata
Genus: Labrenzia
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  261 bits (669), Expect = 7e-71
 Identities = 97/156 (62%), Positives = 122/156 (78%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           M RRRRA  REVLPDPK+   +V KF+N +M  GKKSVA  IVYGA D++E+K  KDP+ 
Sbjct: 1   MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +F +AL NV P  EV++RRVGGA Y VP E+  +R QALA+RWL+ AARKR E TM +RL
Sbjct: 61  VFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
             E++DAANNRG AV+KRE+TH++AEAN+AF+HYRW
Sbjct: 121 ANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156

Length = 156

 Score =  210 bits (537), Expect = 1e-55
 Identities = 86/154 (55%), Positives = 114/154 (74%)

Query: 3   RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
           R+R+A  R++ PDP +   ++ KF+N +M  GKKS+A SIVY AF+ + KK  +DP+ +F
Sbjct: 1   RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVF 60

Query: 63  RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
            QAL NV P  EV++RRVGGA Y VP E+   R  ALAIRWLI AARKR   +M +RL  
Sbjct: 61  EQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLAN 120

Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
           EI+DAANN G A++KRE+TH++AEAN+AF+HYRW
Sbjct: 121 EILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. Length = 154

 Score =  190 bits (486), Expect = 1e-49
 Identities = 79/155 (50%), Positives = 109/155 (70%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR  A  R   PDP + + +V   +N I+  GKKS+A  IVY A   +++K +K+P++
Sbjct: 1   MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLS 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           + RQA+ NVTP  EV+ RRVGG+ Y VP EI S R +ALAIRWL+ A+RKR+   M  +L
Sbjct: 61  VLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
             E++DAA   G A+RK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155

Length = 155

 Score =  184 bits (470), Expect = 6e-48
 Identities = 82/148 (55%), Positives = 112/148 (75%)

Query: 2   SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61
            RR  A  REVLPDPK++  +V + +N IM  GKKS+A  IVYGAFD++EKK  ++P+ +
Sbjct: 1   PRRHTAGKREVLPDPKYNSVIVERLINKIMRDGKKSLAEKIVYGAFDIIEKKTGQNPLQV 60

Query: 62  FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121
           F +A+ NV P+ EV++RRVGGA Y VP E+  +R  ALA+RW++  ARKRNE TM +RL 
Sbjct: 61  FEKAIENVKPREEVKSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKRNEKTMAERLA 120

Query: 122 GEIIDAANNRGVAVRKREETHKVAEANR 149
            E+IDAANN G A++K+E+TH++AEANR
Sbjct: 121 NELIDAANNTGAAIKKKEDTHRMAEANR 148

Length = 148

 Score =  119 bits (300), Expect = 3e-28
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
            S  R A  R         + ++ K MN IM  GKK +A  IV  A +++++  +++P+ 
Sbjct: 57  HSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLARRIVKHALEIIKRLTERNPIQ 116

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMI 117
           +  QA+ N  P  +V      G  Y VP  ++  R   LAI+W++  AR+   RN  T+ 
Sbjct: 117 VLVQAIENCGPLEDVTRIGRAGTTYQVPVPVSPLRRVNLAIKWILTGARERSFRNIKTLA 176

Query: 118 DRLGGEIIDAANNRGVAVRKREETHKVAEANR 149
           + L  E+I AA   G A++K++E H++AEANR
Sbjct: 177 ECLADELIAAAKGSGNAIKKKDELHRMAEANR 208

Length = 208

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 9/137 (6%)

Query: 22  VVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77
           +V + +N +M      GKK  A +IV  AF+++EK+ K++P+ +   A+ N  P+ E   
Sbjct: 59  IVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTR 118

Query: 78  RRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RG 132
            + GG +Y    +++ +R   LA+R++   AR+   +N+ ++ + L  EII AANN  + 
Sbjct: 119 IKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIAAANNDPKS 178

Query: 133 VAVRKREETHKVAEANR 149
            AVRK+EE  +VA++ R
Sbjct: 179 YAVRKKEEIERVAKSAR 195

Length = 195

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 9/138 (6%)

Query: 21  FVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVR 76
            +V + +N +M      GKK  A  IV  AF+++EK+  ++P+ +   A+ N  P+ +  
Sbjct: 49  PIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKRTGENPIQVLVDAIENAGPREDTT 108

Query: 77  TRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131
               GG  Y    +I+  R    A+R + + AR+   RN+ ++ + L  EII AAN   +
Sbjct: 109 RIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAEEIILAANGDSK 168

Query: 132 GVAVRKREETHKVAEANR 149
             A++K+EE  +VA++ R
Sbjct: 169 SYAIKKKEELERVAKSAR 186

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7. Length = 186

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 11/138 (7%)

Query: 22  VVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77
           +V + +N++M+     GKK +AV IV  AF+++     K+P+ +   A+ N  P+ E  T
Sbjct: 57  IVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPR-EDST 115

Query: 78  R-RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131
           R   GG       +++  R    AI  +   AR+   RN  T+ + L  EII+A+     
Sbjct: 116 RVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSN 175

Query: 132 GVAVRKREETHKVAEANR 149
             A++K++E  +VA+ANR
Sbjct: 176 SYAIKKKDEVERVAKANR 193

Length = 193

 Score =  208 bits (531), Expect = 7e-55
 Identities = 82/149 (55%), Positives = 114/149 (76%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           M RR RA  REVLPDPK++  +V K +N +M  GKKS+A  IVY AF+++E+K  K+P+ 
Sbjct: 1   MPRRGRAKKREVLPDPKYNSRLVEKLINKLMKDGKKSLAEKIVYKAFEIIEEKTGKNPLE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           +  QA+ NV P+ EV++RRVGGA Y VP E++ +R  ALAIRW++ AARKR+  +M ++L
Sbjct: 61  VLVQAIENVKPRVEVKSRRVGGATYQVPVEVSPERRVALAIRWILKAARKRSGKSMAEKL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANR 149
             E+IDAANN+G A++K+EETHK+AEANR
Sbjct: 121 ANELIDAANNKGSAIKKKEETHKMAEANR 149

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Length = 149

Probab=100.00  E-value=0  Score=450.57  Aligned_cols=154  Identities=55%  Similarity=0.950  Sum_probs=153.2

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             989997555799974378799999999976695999999999999866742488-6389999999842754047787524
Q gi|254780265|r    3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKK-DPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         3 Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~-npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
T Consensus         1 Rk~~a~kR~~~~Dp~Y~~~Lv~kfin~~M~~GKKs~A~~IvY~al~~i~~k~~~~~pl~vf~~AlenVkP~~EVk~RRVG   80 (159)
T TIGR01029         1 RKRRAEKRKILPDPVYGSVLVAKFINRVMKDGKKSLAESIVYKALERIAKKTGEEDPLEVFEKALENVKPLLEVKSRRVG   80 (159)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             98987763179885124789999998731148630467899999999998718841688999998627872467645654


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             630000010485799999999999999857----999989999999999973888726307889999999888532569
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKR----NETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r----~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
T Consensus        81 GaTYQVP~EV~~~R~~aLA~RWi~~aArkR~~G~~~~~M~~~La~El~dA~~~~G~A~KKkEDtHrMAEANkAFaHyRW  159 (159)
T TIGR01029        81 GATYQVPVEVREERREALAIRWIVEAARKRRMGKSGKTMAERLANELLDAANNTGAAIKKKEDTHRMAEANKAFAHYRW  159 (159)
T ss_pred             CCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf             8665022255761336679999999874236888997888899999999970588525403444208887446422699

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.

Probab=100.00  E-value=0  Score=411.33  Aligned_cols=156  Identities=62%  Similarity=1.032  Sum_probs=155.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
T Consensus         1 msrr~~~~kr~~~~dp~y~~~lv~kfiN~lMk~GKK~~A~kiv~~al~~I~~~t~~nPi~vl~~AI~Nv~P~~ev~s~r~   80 (156)
T PRK05302          1 MPRRRRAPKREILPDPKYGSVLVAKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRV   80 (156)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEEEEE
T ss_conf             98999998887999966587899999999885446999999999999999986537839999999996797531365650


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             4630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
T Consensus        81 GG~~yqVPv~i~~~Rr~~lAirWii~aar~r~~k~~~~~La~Eii~A~~~~g~aikKK~e~hK~AeaNRa~ah~rw  156 (156)
T PRK05302         81 GGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW  156 (156)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8655870576777799999999999999866999889999999999996678512138999999999776630068

Probab=100.00  E-value=0  Score=394.36  Aligned_cols=155  Identities=50%  Similarity=0.789  Sum_probs=154.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
T Consensus         1 m~rr~~~~kr~~~~d~~y~~~lv~kfin~lM~~GKK~~A~~Iv~~al~~I~~~t~~~Pi~vl~~Ai~N~~P~vevks~rv   80 (155)
T CHL00053          1 MSRRGTAKKRTAKSDPIYRNRLVNMLVNRILKHGKKSLAYRIVYRALKKIQQKTETNPLSVLRQAIRNVTPDVEVKARRV   80 (155)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             98999998787999977587999999999984450999999999999999988079878999999997598504676521


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC
Q ss_conf             463000001048579999999999999985799998999999999997388872630788999999988853256
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR  155 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R  155 (156)
T Consensus        81 GG~~yqVPv~v~~~Rr~~lAirWii~aar~r~~k~~~~~La~Eii~A~~~~g~avkKk~e~hk~AeaNRafah~R  155 (155)
T CHL00053         81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR  155 (155)
T ss_pred             CCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             873688500007879999999999999986589988999999999999677833347889999999866141479

Probab=100.00  E-value=0  Score=352.62  Aligned_cols=149  Identities=55%  Similarity=0.894  Sum_probs=147.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
T Consensus         1 M~r~~~~~kr~~~~d~~~~~~lv~k~iN~lM~~GKK~~A~kiv~~al~~I~~~~~~~Pi~vl~~Ai~n~~P~~ev~s~r~   80 (149)
T pfam00177         1 MPRRGRAKKREVLPDPKYNSRLVEKLINKLMKDGKKSLAEKIVYKAFEIIEEKTGKNPLEVLVQAIENVKPRVEVKSRRV   80 (149)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             98999998887899977688899999999885143999999999999999985569879999999997699502576203


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
Q ss_conf             463000001048579999999999999985799998999999999997388872630788999999988
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANR  149 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNR  149 (156)
T Consensus        81 GG~~yqvPv~v~~~r~~~lAirWii~~ar~r~~~~~~~~La~Eii~A~~~~g~aikKk~e~hk~A~aNR  149 (149)
T pfam00177        81 GGATYQVPVEVSPERRVALAIRWILKAARKRSGKSMAEKLANELIDAANNKGSAIKKKEETHKMAEANR  149 (149)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCC
T ss_conf             877788555378889999999999999987599988999999999999689975540899999998568

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.

Probab=100.00  E-value=0  Score=354.11  Aligned_cols=148  Identities=55%  Similarity=0.927  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89899975557999743787999999999766959999999999998667424886389999999842754047787524
Q gi|254780265|r    2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
T Consensus         1 ~r~~~~~kr~~~~dpk~~~~iv~rliN~iM~~GKK~~A~~Ivy~A~~ii~~kTg~~Piqvf~~Ai~N~~P~~Ev~srrvG   80 (148)
T COG0049           1 PRRHTAGKREVLPDPKYNSVIVERLINKIMRDGKKSLAEKIVYGAFDIIEKKTGQNPLQVFEKAIENVKPREEVKSRRVG   80 (148)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHEEEEEC
T ss_conf             99987775567898641249999999999980538999999999999999997898699999999843866540345667


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
Q ss_conf             63000001048579999999999999985799998999999999997388872630788999999988
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANR  149 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNR  149 (156)
T Consensus        81 Ga~yqvpVeV~p~RR~~lAlrwi~~~Ar~r~~ktm~erLA~Eli~Aan~~g~AikKked~hRmAeAnr  148 (148)
T COG0049          81 GATYQVPVEVRPRRRVALALRWIVEGARKRNEKTMAERLANELIDAANNTGAAIKKKEDTHRMAEANR  148 (148)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             71157467367889999999999999986598879999999999987088612233898999998539

Probab=100.00  E-value=2.8e-45  Score=293.63  Aligned_cols=132  Identities=30%  Similarity=0.429  Sum_probs=127.5

Q ss_pred             CCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEECCH
Q ss_conf             3787999999999766----959999999999998667424886389999999842754047787524630000010485
Q gi|254780265|r   18 FSDFVVAKFMNAIMYG----GKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGEITS   93 (156)
Q Consensus        18 y~~~lv~kliN~lMk~----GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~i~~   93 (156)
T Consensus        51 ~~~~IVERlin~lM~~g~n~GKK~~A~~Iv~~AfdiI~~kT~~nPlqV~~~Ai~N~~PreEv~~~r~GG~~yqv~VdVsp  130 (191)
T PTZ00091         51 AQCPIVERLANSLMFHGRNNGKKLKAVRIVRHAFEIIHLLTDKNPLQVLVDAVQKGGPREDSTRVGSGGVVRRQAVDVSP  130 (191)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCEEEEECEECCH
T ss_conf             56852499888876058777709999999999999999985898499999999841871689999737776783435363


Q ss_pred             HHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             79999999999999985---79999899999999999738887--2630788999999988
Q gi|254780265|r   94 KRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        94 ~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
T Consensus       131 ~Rrv~lAlrwi~~gar~~afr~~ksm~e~LA~Eli~Aa~~~~~s~AIkKKee~eRmAeanR  191 (191)
T PTZ00091        131 MRRVNEAIYLLCKGAREAAFRNLKTIAECLADEIINASKGSSNSYAIKKKDEVERVAKANR  191 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHCC
T ss_conf             7899999999999999870159883999999999999728888754230788999887548

Probab=100.00  E-value=7.3e-44  Score=284.52  Aligned_cols=131  Identities=37%  Similarity=0.591  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEECCHH
Q ss_conf             787999999999766----9599999999999986674248863899999998427540477875246300000104857
Q gi|254780265|r   19 SDFVVAKFMNAIMYG----GKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGEITSK   94 (156)
Q Consensus        19 ~~~lv~kliN~lMk~----GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~i~~~   94 (156)
T Consensus        56 ~~~IVERlin~lM~~grntGKK~~A~kIV~~AfdiI~~kT~~NPiqVlv~Ai~N~~PreEvt~i~~GG~~y~~~Vdvsp~  135 (195)
T PRK04027         56 EVPIVERLINKLMRTGRNTGKKQKAYNIVKEAFDIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGIAYPVAVDVSPQ  135 (195)
T ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCH
T ss_conf             57419999888863265543599999999999999999867996999999998358702468988888888741204714


Q ss_pred             HHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCC--CCCCEECHHHHHHHHHHHH
Q ss_conf             9999999999999985---79999899999999999738--8872630788999999988
Q gi|254780265|r   95 RSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREETHKVAEANR  149 (156)
Q Consensus        95 r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~--~g~aikkK~elhk~A~aNR  149 (156)
T Consensus       136 Rrv~lAlr~i~~gar~~afr~~ksm~e~LA~Eli~Aa~~~~~syAIkKKeE~eR~A~a~R  195 (195)
T PRK04027        136 RRVDLALRNIAEGARQASFKNKKSIAECLADEIIAAANNDPKSYAVRKKEEIERVAKSAR  195 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHCC
T ss_conf             789999999999999872169774999999999999718987752010788998887558

Probab=100.00  E-value=1.8e-43  Score=282.11  Aligned_cols=148  Identities=34%  Similarity=0.515  Sum_probs=141.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89899975557999743787999999999766959999999999998667424886389999999842754047787524
Q gi|254780265|r    2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
T Consensus        58 ~~~~~~~~~~~ka~~~~~e~l~~~l~n~~~~~GKK~~a~~Iv~~aleiI~~~t~~NPiqvl~~AI~n~~P~~~~~~i~r~  137 (208)
T KOG3291          58 SAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLARRIVKHALEIIKRLTERNPIQVLVQAIENCGPLEDVTRIGRA  137 (208)
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHCEEECCC
T ss_conf             41000023332111418889999999998714607999999999999999971478899999999814854540010346


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
Q ss_conf             63000001048579999999999999985799---998999999999997388872630788999999988
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNE---TTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANR  149 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~---~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNR  149 (156)
T Consensus       138 g~~~~vpv~v~~~rr~~~Ai~wi~~~ar~~~~~~~~~~ae~La~ELi~Aakgs~~aikKKdeLhr~a~sNR  208 (208)
T KOG3291         138 GTTYQVPVPVSPLRRVNLAIKWILTGARERSFRNIKTLAECLADELIAAAKGSGNAIKKKDELHRMAEANR  208 (208)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             43787035678089999999999999986112342519999999999997077405454899998886149

Probab=100.00  E-value=2.6e-36  Score=239.03  Aligned_cols=133  Identities=32%  Similarity=0.524  Sum_probs=127.0

Q ss_pred             CCCCHHHHHHHHHHHH--------------------CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             4378799999999976--------------------69599999999999986674248863899999998427540477
Q gi|254780265|r   17 KFSDFVVAKFMNAIMY--------------------GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVR   76 (156)
Q Consensus        17 ~y~~~lv~kliN~lMk--------------------~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk   76 (156)
T Consensus        48 Ka~~~IVERLiNkvMr~gg~hykvaghf~Rre~n~l~GKK~~A~~IVk~AFeII~~~T~~NPiQVLV~AI~NagPREdtt  127 (206)
T TIGR01028        48 KAKVPIVERLINKVMRKGGSHYKVAGHFMRRERNSLNGKKLKAYKIVKEAFEIIEKRTKKNPIQVLVDAIENAGPREDTT  127 (206)
T ss_pred             CCCCCEEEECCHHHHCCCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCE
T ss_conf             47421676410024216886100011212023324540268899999999999875508996489845231588975403


Q ss_pred             EEEECCCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCC---CCCEECHHHHHHHHHHHH
Q ss_conf             8752463000001048579999999999999985---799998999999999997388---872630788999999988
Q gi|254780265|r   77 TRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNR---GVAVRKREETHKVAEANR  149 (156)
Q Consensus        77 ~~r~gG~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~---g~aikkK~elhk~A~aNR  149 (156)
T Consensus       128 Ri~~GGi~~~~AVD~Sp~RRvd~Al~~ia~GA~~AAfk~kksIae~LA~Eii~AA~~~~~~SyA~~KK~E~ERvA~SaR  206 (206)
T TIGR01028       128 RIKYGGIAYRQAVDVSPLRRVDVALRNIALGAREAAFKNKKSIAECLAEEIIAAAKGDMSKSYAIKKKEELERVAKSAR  206 (206)
T ss_pred             EECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHCCCCC
T ss_conf             7526750321125307424799999999999999973078878888799999997103454300113521000101479

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.

 Score =  192 bits (489), Expect = 4e-50
 Identities = 80/147 (54%), Positives = 109/147 (74%)

Query: 10  REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
           R++ PDP F D +VAK +N +M+ GKK++A  IVYGAFD++ +K KKDP+ +FRQA+ NV
Sbjct: 3   RQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENV 62

Query: 70  TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
            P  EVR RRVGGA Y VP E+   R  +LA+RW++ AAR +    M ++L  EII A N
Sbjct: 63  KPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYN 122

Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156
           N G A++K+E+TH++AEANRAF+HYRW
Sbjct: 123 NTGTAIKKKEDTHRMAEANRAFAHYRW 149

 Score =  190 bits (485), Expect = 1e-49
 Identities = 80/156 (51%), Positives = 108/156 (69%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           M RRR    R++LPDPKF   ++AKF+N +M  GKKS A SIVY A + + ++  K  + 
Sbjct: 1   MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
            F  AL NV P  EV++RRVGG+ Y VP E+   R  ALA+RW++ AARKR + +M  RL
Sbjct: 61  AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
             E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156

 Score =  189 bits (481), Expect = 3e-49
 Identities = 85/154 (55%), Positives = 109/154 (70%)

Query: 3   RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
           RR     R+VLPDP ++  +V + +N IM  GKKS A  I+Y AFD++ ++  KDP+ +F
Sbjct: 2   RRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVF 61

Query: 63  RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
            QAL NV P  EVR RRVGGA Y VP E+   R  +L +RWL+  AR RNE TM +RL  
Sbjct: 62  EQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLAN 121

Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
           EI+DAANN G AV+KRE+THK+AEAN+AF+HYRW
Sbjct: 122 EIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW 155

 Score =  188 bits (479), Expect = 5e-49
 Identities = 75/150 (50%), Positives = 103/150 (68%)

Query: 3   RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
           RRR    R++LPDPKF   ++AKF+N +M  GKKS A SIVY A + + ++  K  +  F
Sbjct: 1   RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAF 60

Query: 63  RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
             AL NV P  EV++RRVGG+ Y VP E+   R  ALA+RW++ AARKR + +M  RL  
Sbjct: 61  EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLAN 120

Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFS 152
           E+ DAA N+G AV+KRE+ H++AEAN+AF+
Sbjct: 121 ELSDAAENKGTAVKKREDVHRMAEANKAFA 150

 Score =  187 bits (476), Expect = 9e-49
 Identities = 72/155 (46%), Positives = 103/155 (66%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR     +    DP + + +V   +N I+  GKKS+A  I+Y A   +++K + +P++
Sbjct: 1   MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           + RQA+  VTP   V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR    M  +L
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
             E++DAA   G AVRK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155

 Score =  181 bits (462), Expect = 4e-47
 Identities = 70/150 (46%), Positives = 107/150 (71%)

Query: 7   AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQAL 66
           A VR++ PD  + D +V  F+N IM  GKK++A  I Y A  ++++K  ++P+ +F+QA+
Sbjct: 2   AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAV 61

Query: 67  INVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIID 126
            NV P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E     R+  E++D
Sbjct: 62  ENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMD 121

Query: 127 AANNRGVAVRKREETHKVAEANRAFSHYRW 156
           AA  +G AV+K+E+  ++AEANRA++HYRW
Sbjct: 122 AAEGKGGAVKKKEDVERMAEANRAYAHYRW 151

 Score =  153 bits (388), Expect = 2e-38
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 28  NAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSV 87
                  KK  A  +V  AF ++EK+  K+P+ +   A+ N  P+ +  +   GG  Y V
Sbjct: 92  EHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHV 151

Query: 88  PGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREETH 142
             +I+  R   +A+R + + A     R + +  + L  EII AAN   +  A  K+ E  
Sbjct: 152 AVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIE 211

Query: 143 KVAEANR 149
           ++AE++R
Sbjct: 212 RIAESSR 218

 Score =  131 bits (331), Expect = 7e-32
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 14  PDPKFSDFVVAKFMNAIMYGGKK----SVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
              K    +V +  N++M  G+      + V IV  AF+++     ++P+ +   A+IN 
Sbjct: 60  RFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119

Query: 70  TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIID 126
            P+ +       G       +++  R    AI  L   AR+   RN  T+ + L  E+I+
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179

Query: 127 AANNRG--VAVRKREETHKVAEANR 149
           AA       A++K++E  +VA++NR
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204

 Score =  126 bits (317), Expect = 2e-30
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 16  PKFSDFVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71
            K    ++ +  N++M      GKK  AV I+    D++     ++P+ +   A+ N  P
Sbjct: 8   RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 67

Query: 72  QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAA 128
           + +      GGAA     +++  R    AI  L + AR+   RN  T+ + L  E+I+AA
Sbjct: 68  REDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAA 127

Query: 129 NNRG--VAVRKREETHKVAEANR 149
                  A++K++E  +VA++NR
Sbjct: 128 KGSSTSYAIKKKDELERVAKSNR 150

Probab=100.00  E-value=0  Score=391.86  Aligned_cols=156  Identities=51%  Similarity=0.855  Sum_probs=155.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      ||||+.++||.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++
T Consensus         1 m~R~~~~~kr~~~pD~~y~~~lV~kliN~lMk~GKK~~A~kIv~~a~~~I~~~t~~npi~vl~~AI~N~~P~~evk~~r~   80 (179)
T 3i1m_G            1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV   80 (179)
T ss_dssp             -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             96999998787999977587899999999876645999999999999888874367425899999993799627887750


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             4630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||++||||+||++.|+++||||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++|||||||||
T Consensus        81 GG~~~qvPv~i~~~rr~~lAirWil~aar~r~~k~~~~~La~EIi~A~~~~g~aikKK~elhK~A~aNRa~ahyRW  156 (179)
T 3i1m_G           81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW  156 (179)
T ss_dssp             SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC----
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             7722222022282889999999999999865999899999999999995899766519999999999899998998

Probab=100.00  E-value=0  Score=385.87  Aligned_cols=155  Identities=55%  Similarity=0.910  Sum_probs=154.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89899975557999743787999999999766959999999999998667424886389999999842754047787524
Q gi|254780265|r    2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
                      |||++++||.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++|
T Consensus         1 pr~~~~~kr~~~pd~~y~~~lv~k~in~lM~~GKK~~A~kIv~~al~~i~~~~~~~pi~il~~Ai~n~~P~~ev~~~r~g   80 (155)
T 1hus_A            1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVG   80 (155)
T ss_dssp             --------CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEET
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             99998887889999665879999999999862219999999999999999873998689999999935885114656408


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      |++||||+++++.|+++||||||+++|+++++++|+++||+||+||++|+|.|++||+|+||+|++||||+||||
T Consensus        81 G~~yqvPv~v~~~rr~~lAirWil~~a~~r~~~~~~~~La~Eii~A~~~~g~avkKK~e~hk~A~aNRa~ahyRw  155 (155)
T 1hus_A           81 GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW  155 (155)
T ss_dssp             TEECCEEEECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC--------
T ss_pred             CEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf             764787575186899999999999999846889899999999999994899766518999999998662502589

Probab=100.00  E-value=0  Score=372.36  Aligned_cols=150  Identities=47%  Similarity=0.844  Sum_probs=148.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf             97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r    7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS   86 (156)
Q Consensus         7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq   86 (156)
                      |++|.++|||+|+|++|++|||+||++|||++|++|++++|++|++++++||+++|++||+|++|.+||+++++||++||
T Consensus         2 a~~r~~~pd~~y~~~lv~k~iN~lMk~GKK~~A~kI~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~ev~~~r~gG~~~~   81 (151)
T 1rss_A            2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQ   81 (151)
T ss_dssp             -----CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEE
T ss_conf             98676899976588999999999874347999999999999998870589749999999996599402243555888577


Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             0010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   87 VPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        87 vP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||+++++.||++||||||+++|++|++++|+++||+||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        82 vP~~is~~rr~~lAirWil~aa~kr~~~~~~~~La~Eii~a~~~~g~aikKk~e~hk~A~aNRa~~hyRw  151 (151)
T 1rss_A           82 VPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW  151 (151)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCC
T ss_conf             1466787899999999999999866999899999999999980888642219999999999661503689

Probab=100.00  E-value=0  Score=378.97  Aligned_cols=155  Identities=46%  Similarity=0.724  Sum_probs=154.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      ||||+++++|.++|||+|+|++|++|||++|++|||++|++||+++|++|+++|++||+++|++||+|++|.+||+++|+
T Consensus         1 m~rr~~~~kr~~~~Dp~~~~~lv~klin~lmk~GKK~~A~kiv~~a~~~I~~~~~~~pl~vl~~Ai~N~~P~~ev~~~r~   80 (155)
T 3bbn_G            1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV   80 (155)
T ss_dssp             -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             96999998788999987574999999987642876999999999999999985588858999999980799625665641


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC
Q ss_conf             463000001048579999999999999985799998999999999997388872630788999999988853256
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR  155 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R  155 (156)
                      ||++||||+++++.|++++|||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++||||||||
T Consensus        81 GG~~~~vPv~i~~~r~~~lAirWil~~a~kr~~k~~~~~La~Eii~A~~~~g~aikKk~e~hk~A~aNRa~ah~R  155 (155)
T 3bbn_G           81 GGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR  155 (155)
T ss_dssp             TTEEECCEEECCHHHHHHHHTTHHHHHHHTCCSSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred             CCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCC
T ss_conf             887478611317999999999999999987699999999999999998089974450899999999977464369

Probab=100.00  E-value=0  Score=366.40  Aligned_cols=148  Identities=54%  Similarity=0.954  Sum_probs=146.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECE
Q ss_conf             55579997437879999999997669599999999999986674248863899999998427540477875246300000
Q gi|254780265|r    9 VREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVP   88 (156)
Q Consensus         9 kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP   88 (156)
                      +|.+.|||+|+|++|++|||+||++|||++|++|++++|++|++.+++||+++|++||+|++|.+||+++++||++||||
T Consensus         2 ~r~~~pd~~~~~~lv~k~in~lMk~GKK~kA~kiv~~al~~i~~~~~~~pi~il~~Ai~n~~P~~ev~~~r~GG~~~~vP   81 (149)
T 3gty_S            2 GRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP   81 (149)
T ss_dssp             CCCCCCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCEEECCEEEEEC
T ss_conf             89789986658789999999998724499999999999999987457854699999999767820110342088868824


Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             10485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        89 ~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      +++++.||++||||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        82 v~i~~~rr~~lAirWil~~a~~k~~~~~~~~La~Eii~a~~~~g~avkkk~e~hK~A~anRa~~h~Rw  149 (149)
T 3gty_S           82 IEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW  149 (149)
T ss_dssp             EECCTHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCC
T ss_conf             76787899999999999999875999899999999999980888631229999999999661502589

Probab=100.00  E-value=0  Score=358.16  Aligned_cols=150  Identities=50%  Similarity=0.806  Sum_probs=148.6

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf             98999755579997437879999999997669599999999999986674248863899999998427540477875246
Q gi|254780265|r    3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGG   82 (156)
Q Consensus         3 Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG   82 (156)
                      ||+++++|.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++||
T Consensus         1 R~~~~~kr~~~pD~~y~~~lv~kfin~lM~~GKK~~A~~iv~~al~~i~~~~~~~pi~vl~~Ai~n~~P~~ev~~~r~GG   80 (150)
T 3ofp_G            1 RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGG   80 (150)
T ss_dssp             CCSCCCCCCCCCCSSSCCHHHHTHHHHHCCTTCTTSTTTSSSSSSTTSSSSSCCCTTTSSTTTTTSSCCCSBCCCCCSSS
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             99988889899997768899999999988654299999999999999988537853378999998089851577642077


Q ss_pred             CCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHH
Q ss_conf             3000001048579999999999999985799998999999999997388872630788999999988853
Q gi|254780265|r   83 AAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFS  152 (156)
Q Consensus        83 ~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~a  152 (156)
                      ++||||+|+++.|++++|||||+++|++|++++|+++|++||++|++|+|.|++||+|+||+|++|||||
T Consensus        81 ~~y~vP~~i~~~r~~~lAirWil~~a~~r~~k~~~~~La~Eii~A~~~~g~aikKk~elhK~A~aNRa~a  150 (150)
T 3ofp_G           81 STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA  150 (150)
T ss_dssp             CCCCCCBCCCHHHHHHTHHHHTTTTTSSSSCSSHHHHTTTTGGGTTSCCSSSSHHHHTTTCCCCCCCCCC
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCC
T ss_conf             1223423417678999999999999986699989999999999998289976650999999999887729

Probab=100.00  E-value=0  Score=303.12  Aligned_cols=140  Identities=29%  Similarity=0.421  Sum_probs=131.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             99755579997437879999999997----66959999999999998667424886389999999842754047787524
Q gi|254780265|r    6 RAVVREVLPDPKFSDFVVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         6 ~~~kr~~~pD~~y~~~lv~kliN~lM----k~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
                      .+.+++    +++++|+|++|||+||    ++|||++|++|||+||++|+++|++||++||++||+|++|.+||+++++|
T Consensus         2 ~a~~~f----~k~~~~iv~r~iN~lM~~g~k~GKK~~A~kiv~~al~~i~~~t~~nP~~vl~~Ai~N~~P~~ev~~~r~G   77 (150)
T 2noq_F            2 YANKRF----RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGG   77 (150)
T ss_dssp             CSCCCC----CCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECS
T ss_pred             CCCCCC----CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             530125----7545869999999977625468749999999999999999846998899999999947996588873038


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             63000001048579999999999999985---79999899999999999738887--2630788999999988
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      |++||||+||++.|+++||||||+++|++   +++++|+++||+||++|++|+|.  ||+||+|+||||+|||
T Consensus        78 G~~yqvPv~v~~~rr~~lAirwi~~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~s~AvkKK~e~hk~A~aNR  150 (150)
T 2noq_F           78 GAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR  150 (150)
T ss_dssp             SSEEEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC
T ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             7567742220816889999999999999863369998999999999999818898523126889999998568

Probab=100.00  E-value=1.4e-45  Score=293.42  Aligned_cols=135  Identities=29%  Similarity=0.409  Sum_probs=129.7

Q ss_pred             CCCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEE
Q ss_conf             974378799999999976----6959999999999998667424886389999999842754047787524630000010
Q gi|254780265|r   15 DPKFSDFVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGE   90 (156)
Q Consensus        15 D~~y~~~lv~kliN~lMk----~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~   90 (156)
                      ..+.+.++|++|||.||.    +|||++|++||++||++|+++|++||++||++||+|++|.+|++++++||.+||||++
T Consensus        61 f~K~~~~iverliN~LM~~g~k~GKK~~A~kIv~~Af~iI~~~T~~nPi~Vl~~AI~N~~P~~ev~rir~GG~~y~vPV~  140 (204)
T 2zkq_g           61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD  140 (204)
T ss_dssp             --CCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEE
T ss_conf             26556859999999999977607488999999999999999736898899999999827996478997418746872023


Q ss_pred             CCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             48579999999999999985---79999899999999999738887--2630788999999988
Q gi|254780265|r   91 ITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        91 i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      ++|.||+++|||||+++|++   |++++|+++||+||++|++|+|.  ||+||+|+||+|+|||
T Consensus       141 vsp~Rr~~lAlrwi~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~g~s~AikKKeEihr~A~aNR  204 (204)
T 2zkq_g          141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR  204 (204)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHC-CTTCCC-CHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC
T ss_conf             1788999999999999998642578887999999999999818899631213889999998568

Probab=100.00  E-value=4.2e-45  Score=290.80  Aligned_cols=131  Identities=30%  Similarity=0.471  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             787999999999766--------------------959999999999998667424886389999999842754047787
Q gi|254780265|r   19 SDFVVAKFMNAIMYG--------------------GKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTR   78 (156)
Q Consensus        19 ~~~lv~kliN~lMk~--------------------GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~   78 (156)
                      +.++|++|||.||++                    |||++|++||++||++|+.+|++||++||++||+|++|.+||+++
T Consensus        63 ~~~IVERliN~lM~~G~n~~~~~~~~~~~~~~~~~GKK~~A~kIv~~A~~iI~~kT~~nPi~Vl~~AI~N~~P~~ev~si  142 (218)
T 1iqv_A           63 NVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV  142 (218)
T ss_dssp             -CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             58699999988642455422223310000014577729999999999999999855998799999999967983003777


Q ss_pred             EECCCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCC--CCCCEECHHHHHHHHHHHH
Q ss_conf             52463000001048579999999999999985---79999899999999999738--8872630788999999988
Q gi|254780265|r   79 RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREETHKVAEANR  149 (156)
Q Consensus        79 r~gG~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~--~g~aikkK~elhk~A~aNR  149 (156)
                      ++||++||||++++|.||+++|||||+++|++   |++++|+++||+||++|++|  +|.||+||+|+||+|+|||
T Consensus       143 r~GG~~yqvPV~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~EIi~Aa~~~~ks~AikKKeE~hK~AeaNR  218 (218)
T 1iqv_A          143 MFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  218 (218)
T ss_dssp             EETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf             4398888617221688999999999999999864678888999999999999758788655650788999898568

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

 Score =  180 bits (458), Expect = 5e-47
 Identities = 67/145 (46%), Positives = 103/145 (71%)

Query: 12  VLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71
           + PD  + D +V  F+N IM  GKK++A  I Y A  ++++K  ++P+ +F+QA+ NV P
Sbjct: 1   LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKP 60

Query: 72  QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNR 131
           + EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E     R+  E++DAA  +
Sbjct: 61  RMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGK 120

Query: 132 GVAVRKREETHKVAEANRAFSHYRW 156
           G AV+K+E+  ++AEANRA++HYRW
Sbjct: 121 GGAVKKKEDVERMAEANRAYAHYRW 145

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

 Score =  175 bits (446), Expect = 1e-45
 Identities = 75/150 (50%), Positives = 103/150 (68%)

Query: 3   RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
           RRR    R++LPDPKF   ++AKF+N +M  GKKS A SIVY A + + ++  K  +  F
Sbjct: 1   RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAF 60

Query: 63  RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
             AL NV P  EV++RRVGG+ Y VP E+   R  ALA+RW++ AARKR + +M  RL  
Sbjct: 61  EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLAN 120

Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFS 152
           E+ DAA N+G AV+KRE+ H++AEAN+AF+
Sbjct: 121 ELSDAAENKGTAVKKREDVHRMAEANKAFA 150

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  161 bits (408), Expect = 3e-41
 Identities = 77/139 (55%), Positives = 99/139 (71%)

Query: 10  REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
           R+VLPDP ++  +V + +N IM  GKKS A  I+Y AFD++ ++  KDP+ +F QAL NV
Sbjct: 1   RDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNV 60

Query: 70  TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
            P  EVR RRVGGA Y VP E+   R  +L +RWL+  AR RNE TM +RL  EI+DAAN
Sbjct: 61  MPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAAN 120

Query: 130 NRGVAVRKREETHKVAEAN 148
           N G AV+KRE+THK+AEAN
Sbjct: 121 NTGAAVKKREDTHKMAEAN 139

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  131 bits (330), Expect = 4e-32
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)

Query: 27  MNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86
                   KK  A  +V  AF ++EK+  K+P+ +   A+ N  P+ +  +   GG  Y 
Sbjct: 74  REHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH 133

Query: 87  VPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREET 141
           V  +I+  R   +A+R + + A     R + +  + L  EII AAN   +  A  K+ E 
Sbjct: 134 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEI 193

Query: 142 HKVAEANR 149
            ++AE++R
Sbjct: 194 ERIAESSR 201

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=368.01  Aligned_cols=145  Identities=46%  Similarity=0.849  Sum_probs=143.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEEC
Q ss_conf             79997437879999999997669599999999999986674248863899999998427540477875246300000104
Q gi|254780265|r   12 VLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGEI   91 (156)
Q Consensus        12 ~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~i   91 (156)
                      +.|||+|+|++|++|||+||++|||++|++|++++|++|++++++||+++|++||+|++|.+||+++++||++||||+++
T Consensus         1 ~~pdp~y~d~lv~k~in~lMk~GKK~~A~~iv~~al~~i~~~~~~npi~vl~~Ai~n~~P~~evk~~r~gG~~~~vPv~i   80 (145)
T d1rssa_           1 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEV   80 (145)
T ss_dssp             CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECC
T ss_conf             98998779889999999987624699999999999998887135760899999986352102014466377002530046


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             85799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   92 TSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        92 ~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ++.||++||||||+++|++|++++|+++||+||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        81 ~~~rr~~lAirwil~aa~~r~~k~~~~~La~Eii~A~~~~g~aikkK~e~hK~A~aNRa~ah~Rw  145 (145)
T d1rssa_          81 SPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW  145 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             87899999999999999864999899999999999982888654408889999999774611379

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=365.16  Aligned_cols=150  Identities=50%  Similarity=0.806  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf             98999755579997437879999999997669599999999999986674248863899999998427540477875246
Q gi|254780265|r    3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGG   82 (156)
Q Consensus         3 Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG   82 (156)
                      ||+++++|.++|||+|+|++|++|||+||++|||++|++|+|++|++|+++|++||+++|++||+|++|.+||+++++||
T Consensus         1 Rr~~~~kr~~~pD~~y~~~lV~kfiN~lM~~GKK~~A~~iv~~al~~i~~~t~~~pi~vl~~AI~nv~P~~ev~~~r~gG   80 (150)
T d2qalg1           1 RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGG   80 (150)
T ss_dssp             CCCCCCCCCCCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHSCCSEEEEEEECSS
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             99988888799997768789999999987753599999999999999998458876049999999722303677565266


Q ss_pred             CCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHH
Q ss_conf             3000001048579999999999999985799998999999999997388872630788999999988853
Q gi|254780265|r   83 AAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFS  152 (156)
Q Consensus        83 ~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~a  152 (156)
                      ++||||+++++.|+++||||||+++|++|++++|+++||+||++|++|+|.|++||||+||+|+||||||
T Consensus        81 ~~yqvP~~v~~~r~~~lAirWi~~aar~r~~k~~~~~La~Eii~A~~~~g~avkKk~e~hk~AeaNRafa  150 (150)
T d2qalg1          81 STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA  150 (150)
T ss_dssp             SEEEEEEECCHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTTTTTTC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCC
T ss_conf             1433214407488999999999999986699988999999999999489986763788899999876619

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=0  Score=334.18  Aligned_cols=139  Identities=55%  Similarity=0.890  Sum_probs=137.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEE
Q ss_conf             55799974378799999999976695999999999999866742488638999999984275404778752463000001
Q gi|254780265|r   10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPG   89 (156)
Q Consensus        10 r~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~   89 (156)
                      |.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++||++||||+
T Consensus         1 r~i~pd~~y~~~lv~k~iN~lM~~GKK~~A~kiv~~al~~i~~~~~~~pi~vl~~Ai~n~~P~~ev~~~r~GG~~yqvPv   80 (139)
T d1husa_           1 RDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPV   80 (139)
T ss_dssp             CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCEEEEE
T ss_conf             99899876698899999999988107999999999989999985689860499999986320340232541763247657


Q ss_pred             ECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHH
Q ss_conf             04857999999999999998579999899999999999738887263078899999998
Q gi|254780265|r   90 EITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEAN  148 (156)
Q Consensus        90 ~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aN  148 (156)
                      ++++.||++||||||+++|++|++++|+++||+||++|++|+|.|++||+|+||+|+||
T Consensus        81 ~i~~~rr~~lAirwi~~~a~~r~~~~~~~~La~Eii~A~~~~g~avkKK~e~hk~AeaN  139 (139)
T d1husa_          81 EVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAANNTGAAVKKREDTHKMAEAN  139 (139)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC
T ss_pred             EECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCC
T ss_conf             60869999999999999998769887899999999999848884655278888887548

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-45  Score=292.59  Aligned_cols=131  Identities=31%  Similarity=0.479  Sum_probs=125.9

Q ss_pred             CCHHHHHHHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7879999999997669--------------------59999999999998667424886389999999842754047787
Q gi|254780265|r   19 SDFVVAKFMNAIMYGG--------------------KKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTR   78 (156)
Q Consensus        19 ~~~lv~kliN~lMk~G--------------------KK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~   78 (156)
                      +.++|++|||.||.+|                    ||++|++||++||++|+.+|++||++||++||+|++|.+||+++
T Consensus        46 ~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~N~~P~~Ev~~~  125 (201)
T d1iqva_          46 NVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV  125 (201)
T ss_dssp             -CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf             00379999877643555432344430000113577629999999999999999862899189999999850344899997


Q ss_pred             EECCCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH
Q ss_conf             52463000001048579999999999999985---799998999999999997388--872630788999999988
Q gi|254780265|r   79 RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR  149 (156)
Q Consensus        79 r~gG~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR  149 (156)
                      ++||++||||++++|.||+++|||||+++|++   |++++|+++||+||++|++|+  |.||+||||+||+|+|||
T Consensus       126 r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~hk~A~aNR  201 (201)
T d1iqva_         126 MFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  201 (201)
T ss_dssp             EETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf             4288401267056788889999999999998754788787999999999999748788646763688899898568

 Score =  177 bits (451), Expect = 5e-46
 Identities = 72/155 (46%), Positives = 103/155 (66%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           MSRR     +    DP + + +V   +N I+  GKKS+A  I+Y A   +++K + +P++
Sbjct: 1   MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
           + RQA+  VTP   V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR    M  +L
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
             E++DAA   G AVRK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155

 Score =  175 bits (445), Expect = 2e-45
 Identities = 80/156 (51%), Positives = 108/156 (69%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
           M RRR    R++LPDPKF   ++AKF+N +M  GKKS A SIVY A + + ++  K  + 
Sbjct: 1   MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
            F  AL NV P  EV++RRVGG+ Y VP E+   R  ALA+RW++ AARKR + +M  RL
Sbjct: 61  AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120

Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
             E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156

 Score =  174 bits (442), Expect = 6e-45
 Identities = 80/149 (53%), Positives = 110/149 (73%)

Query: 8   VVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALI 67
           + R++ PDP F D +VAK +N +M+ GKK++A  IVYGAFD++ +K KKDP+ +FRQA+ 
Sbjct: 1   MGRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVE 60

Query: 68  NVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDA 127
           NV P  EVR RRVGGA Y VP E+   R  +LA+RW++ AAR +    M ++L  EII A
Sbjct: 61  NVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAA 120

Query: 128 ANNRGVAVRKREETHKVAEANRAFSHYRW 156
            NN G A++K+E+TH++AEANRAF+HYRW
Sbjct: 121 YNNTGTAIKKKEDTHRMAEANRAFAHYRW 149

 Score =  170 bits (433), Expect = 7e-44
 Identities = 83/155 (53%), Positives = 104/155 (67%)

Query: 2   SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61
            RR     R+VLPDP ++  +V + +N I   GKKS A  I+Y AFD++ ++  KDP  +
Sbjct: 1   PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEV 60

Query: 62  FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121
           F QAL NV P  EVR RRVGGA Y VP E+   R  +L +RWL+  AR RNE T  +RL 
Sbjct: 61  FEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLA 120

Query: 122 GEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
            EI DAANN G AV+KRE+THK AEAN+AF+HYRW
Sbjct: 121 NEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155

 Score =  155 bits (394), Expect = 2e-39
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 5/150 (3%)

Query: 5   RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQ 64
           R A  R         + +    M      GKK  AV I+    D++     ++P+ +   
Sbjct: 1   RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVD 60

Query: 65  ALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMIDRLG 121
           A+ N  P+ +      GGAA     +++  R    AI  L + AR+    N  T+ + L 
Sbjct: 61  AITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLA 120

Query: 122 GEIIDAANNRG--VAVRKREETHKVAEANR 149
            E+I+AA       A++K++E  +VA++NR
Sbjct: 121 EELINAAKGSSTSYAIKKKDELERVAKSNR 150

 Score =  153 bits (388), Expect = 9e-39
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
            S  R A  R         + +    M      GKK + V IV  AF+++     ++P+ 
Sbjct: 51  HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQ 110

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMI 117
           +   A+IN  P+ +       G       +++  R    AI  L   AR+    N  T+ 
Sbjct: 111 VLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 170

Query: 118 DRLGGEIIDAANNRG--VAVRKREETHKVAEANR 149
           + L  E+I+AA       A++K++E  +VA++NR
Sbjct: 171 ECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204

 Score =  142 bits (360), Expect = 1e-35
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 1   MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
               R            +                KK  A  +V  AF ++EK+  K+P+ 
Sbjct: 65  HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124

Query: 61  LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMI--- 117
           +   A+ N  P+ +  +   GG  Y V  +I+  R   +A+R + + A  +   T +   
Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184

Query: 118 DRLGGEIIDAANN--RGVAVRKREETHKVAEANR 149
           + L  EII AAN   +  A  K+ E  ++AE++R
Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218

 Score =  133 bits (336), Expect = 1e-32
 Identities = 68/147 (46%), Positives = 105/147 (71%)

Query: 10  REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
           R++ PD  + D +V  F+N IM  GKK++A  I Y A  ++++K  ++P+ +F+QA+ NV
Sbjct: 5   RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENV 64

Query: 70  TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
            P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E     R+  E++DAA 
Sbjct: 65  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAE 124

Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156
            +G AV+K+E+  ++AEANRA++HYRW
Sbjct: 125 GKGGAVKKKEDVERMAEANRAYAHYRW 151

Probab=100.00  E-value=0  Score=371.70  Aligned_cols=156  Identities=51%  Similarity=0.855  Sum_probs=155.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      ||||++++++..+|||+|+|++|++|||++|++|||++|++|++++|++|+..|++||+++|++||+|++|.+||+++++
T Consensus         1 Msr~~~~~k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~kIv~~al~~I~~~t~~nPi~il~~Ai~Nv~P~~ev~~ik~   80 (179)
T 3i1m_G            1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV   80 (179)
T ss_dssp             -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             97999998787999976587999999999875641999999999999998873467640689999985356057886641


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             4630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||++||||++|++.|++++||+||+++|+++++++|+++||+||++|++++|.|++||||+||+|++||||+||||
T Consensus        81 gG~~y~vP~~i~~~rr~~lAirWll~~a~~r~~k~~~~~La~Eii~A~~~~G~aikKK~elhK~A~aNRa~ah~Rw  156 (179)
T 3i1m_G           81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW  156 (179)
T ss_dssp             SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC----
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             7744323232381889999999999988743899899999999999994889666628999999999999998898

Probab=100.00  E-value=0  Score=360.97  Aligned_cols=155  Identities=54%  Similarity=0.881  Sum_probs=154.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89899975557999743787999999999766959999999999998667424886389999999842754047787524
Q gi|254780265|r    2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
                      |||+++.++..++||+|+|++|++|||++|++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++|
T Consensus         1 s~~~~~~k~~~~~~~~~~~~li~klin~~mk~GKK~~A~~i~~~~l~~i~~~~~~np~~il~~Ai~n~~P~~ev~~~k~g   80 (155)
T 1hus_A            1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEVFEQALKNVXPVLEVRARRVG   80 (155)
T ss_dssp             --------CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEET
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             99987876889999664888999999997565359999999999999999853775089999999967872135521548


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      |.+||||+|+++.|++++||+||+++|+++++++|+++|+.||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        81 g~~~~vP~~i~~~r~~~lAirWll~~~~~k~~k~~~~~La~Eii~A~~~~G~aikKK~elhk~A~aNRa~~h~Rw  155 (155)
T 1hus_A           81 GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLANEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW  155 (155)
T ss_dssp             TEECCEEEECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC--------
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             721313366078899999999999999875999869999999999994788401138999999999787750179

Probab=100.00  E-value=0  Score=360.70  Aligned_cols=155  Identities=46%  Similarity=0.724  Sum_probs=154.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      |||++.+++++.++||+|+|++|++|+|++|++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++
T Consensus         1 ms~~~~~kk~~~~~~~~~~~~li~k~in~lm~~GKK~~A~~i~~~al~~i~~~~~~nPi~il~~Ai~N~~P~~ev~~~k~   80 (155)
T 3bbn_G            1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV   80 (155)
T ss_dssp             -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             97999898788999988687999999999985232999999999999989874588728999999993599652343540


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC
Q ss_conf             463000001048579999999999999985799998999999999997388872630788999999988853256
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR  155 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R  155 (156)
                      ||.+||||+|+++.||+++|||||+++|++|++.+|+++||+||++|++|+|.|++||+|+||+|++||||+|||
T Consensus        81 gg~~~~vPv~i~~~rr~~lAirwil~~a~~k~~~~~~~~La~Eli~A~~~~g~aikkK~elhk~A~aNRa~~h~R  155 (155)
T 3bbn_G           81 GGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR  155 (155)
T ss_dssp             TTEEECCEEECCHHHHHHHHTTHHHHHHHTCCSSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCC
T ss_conf             870320015767899999999999999986689988999999999998388861232889999999987664369

Probab=100.00  E-value=0  Score=350.47  Aligned_cols=148  Identities=54%  Similarity=0.954  Sum_probs=146.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECE
Q ss_conf             55579997437879999999997669599999999999986674248863899999998427540477875246300000
Q gi|254780265|r    9 VREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVP   88 (156)
Q Consensus         9 kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP   88 (156)
                      |+..+|||+|+|++|++|||+||++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++||.+||||
T Consensus         2 k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~~i~~~al~~i~~~~~~npi~il~~ai~n~~P~~~v~~~k~gg~~~~vP   81 (149)
T 3gty_S            2 GRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP   81 (149)
T ss_dssp             CCCCCCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEC
T ss_conf             78589986658889999999998724399999999999999987356643799999998078831001144488857825


Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             10485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        89 ~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      +|+++.||+++||+||++++++|++++|+++|++||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        82 ~~i~~~rr~~lAikwll~~~~~r~~k~~~~~La~Eii~a~~~~g~aikkK~elhK~A~aNRa~~h~Rw  149 (149)
T 3gty_S           82 IEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW  149 (149)
T ss_dssp             EECCTHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             86788899999999999999875999899999999999980888531239999999999774610379

Probab=100.00  E-value=0  Score=326.89  Aligned_cols=145  Identities=26%  Similarity=0.338  Sum_probs=140.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             99975557999743787999999999766959999999999998667424886389999999842754047787524630
Q gi|254780265|r    5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAA   84 (156)
Q Consensus         5 ~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~   84 (156)
                      +++++|+.+|||+|+|++|++|||++|++|||++|++|+++||++|++.|++||+++|++||+||+|.+||+++++||.+
T Consensus         1 r~a~kr~~~~d~~~~~~li~klin~~m~~GKK~~A~ki~~~al~~i~~~~~~nPi~vl~~Ai~N~~P~~ev~~~r~gG~~   80 (150)
T 2noq_F            1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAA   80 (150)
T ss_dssp             CCSCCCCCCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECSSSE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCEE
T ss_conf             97432367556868999999988745457649999999999999999736898607899999861353777998755623


Q ss_pred             EECEEECCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             00001048579999999999999985799---99899999999999738887--2630788999999988
Q gi|254780265|r   85 YSVPGEITSKRSQALAIRWLIMAARKRNE---TTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        85 yqvP~~i~~~r~~~lAirWii~~a~~r~~---~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      ||||+++++.|++++|||||+++|+++++   ++|+++||+||++|++|+|.  |++||+|+||||++||
T Consensus        81 ~qvPv~i~~~r~~~lAirWil~~ar~r~~~~~~~~~~~La~Eli~A~~~~G~s~aikKK~elhk~AeaNR  150 (150)
T 2noq_F           81 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR  150 (150)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC
T ss_pred             EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             4665776828989999999999999862489888899999999999837898403136889999998568

Probab=100.00  E-value=0  Score=316.24  Aligned_cols=149  Identities=26%  Similarity=0.312  Sum_probs=144.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      |+|+..+.+++.++|+.|+|+||++|+|++|++|||++|++|++.||++|+..|++||++||++||+||+|.+||+++++
T Consensus        51 ~~~~~~~~k~~~~~~~~~~d~lv~klin~~m~~GKK~~A~~iv~~a~~~I~~~t~~nPi~vl~~AI~N~~P~~ev~~~~~  130 (204)
T 2zkq_g           51 HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR  130 (204)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             42425553120122146999999999998874547889999999999999986189906889999980364304588753


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             46300000104857999999999999998579---999899999999999738887--2630788999999988
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      ||.+||||++|++.||+++|||||+++|++++   .++|+++||+||++|++|+|.  |++||+|+||+|+|||
T Consensus       131 gG~~~~vPv~is~~rr~~lAirwil~~ar~~~~~~~k~~~~~La~Eii~A~~~~g~s~aikKKeelhk~AeaNR  204 (204)
T 2zkq_g          131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR  204 (204)
T ss_dssp             TTEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHC-CTTCCC-CHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC
T ss_conf             58326600423818999999999999998742579886999999999999808899621324788999998568

Probab=100.00  E-value=0  Score=307.44  Aligned_cols=150  Identities=47%  Similarity=0.844  Sum_probs=148.5

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf             97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r    7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS   86 (156)
Q Consensus         7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq   86 (156)
                      |+++...|||+|++++|++|+|.+|++|||++|++|++.+|++|+.+++.||+.+++.||.|++|.++++++++||.+||
T Consensus         2 a~k~~~~~~~~~~~~lv~k~~n~lm~~gkk~~a~~ii~~~~~~l~~~~k~nPi~i~~~av~n~~p~~~l~~~~~~g~~~~   81 (151)
T 1rss_A            2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQ   81 (151)
T ss_dssp             -----CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC
T ss_conf             98676899977698899999999875345999999999999988860588622589999998532450344653872211


Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             0010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   87 VPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        87 vP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||+++++.|+.++||+||+++++.|++++|+++|++||++|++++|.+++++||+|++|++||||+||||
T Consensus        82 vP~~l~~~r~~~lai~wli~~~~~r~~~~~~~~l~~ei~~a~~~~g~~i~~kdElHkla~anra~~~~r~  151 (151)
T 1rss_A           82 VPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW  151 (151)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             3625694899999999999999875887399999999999972888631219999999999775601489

Probab=100.00  E-value=0  Score=303.51  Aligned_cols=143  Identities=24%  Similarity=0.295  Sum_probs=135.1

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf             97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r    7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS   86 (156)
Q Consensus         7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq   86 (156)
                      +.+....+||.|+|++|++|+|++|++|||++|++|++.+|++|+.+|++||+++|++||+|++|.+|++++++||.+||
T Consensus        71 ~~~~~~~~~~~~~~~lv~~~~n~lm~~GKK~~A~kiv~~a~~~i~~~t~~nPi~vl~~Ai~N~~P~~ev~~~~~GG~~~~  150 (218)
T 1iqv_A           71 INKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH  150 (218)
T ss_dssp             HHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEE
T ss_pred             HHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEEEECCCEEEE
T ss_conf             98874345543333441000002457773999999999999999984589869999999996798112057533987887


Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH
Q ss_conf             00104857999999999999998579---9998999999999997388--872630788999999988
Q gi|254780265|r   87 VPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR  149 (156)
Q Consensus        87 vP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR  149 (156)
                      ||+|+++.||+++||+||+++|++++   .++|+++||+||++|++|+  |.|++||+|+||+|++||
T Consensus       151 vPv~is~~rr~~lAirwIl~~a~~r~~~~~~~~~~~LA~Eii~Aa~~~gks~aikKK~elhk~A~aNR  218 (218)
T 1iqv_A          151 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  218 (218)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf             27242688999999999999999864678888999999999999758888646652688999898568