HHsearch alignment of GI: 254780265 and MMDB domain: 1iqv_A_
>1iqv_A (A:) Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=0 Score=303.51 Aligned_cols=143 Identities=24% Similarity=0.295 Sum_probs=135.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf 97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r 7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86 (156)
Q Consensus 7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq 86 (156)
+.+....+||.|+|++|++|+|++|++|||++|++|++.+|++|+.+|++||+++|++||+|++|.+|++++++||.+||
T Consensus 71 ~~~~~~~~~~~~~~~lv~~~~n~lm~~GKK~~A~kiv~~a~~~i~~~t~~nPi~vl~~Ai~N~~P~~ev~~~~~GG~~~~ 150 (218)
T 1iqv_A 71 INKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH 150 (218)
T ss_dssp HHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEE
T ss_pred HHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEEEECCCEEEE
T ss_conf 98874345543333441000002457773999999999999999984589869999999996798112057533987887
Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH
Q ss_conf 00104857999999999999998579---9998999999999997388--872630788999999988
Q gi|254780265|r 87 VPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR 149 (156)
Q Consensus 87 vP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR 149 (156)
||+|+++.||+++||+||+++|++++ .++|+++||+||++|++|+ |.|++||+|+||+|++||
T Consensus 151 vPv~is~~rr~~lAirwIl~~a~~r~~~~~~~~~~~LA~Eii~Aa~~~gks~aikKK~elhk~A~aNR 218 (218)
T 1iqv_A 151 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 (218)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf 27242688999999999999999864678888999999999999758888646652688999898568