HHSEARCH alignment of GI: 254780265 and SCOP domain: d1iqva_

Alignment
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=1.4e-45  Score=292.59  Aligned_cols=131  Identities=31%  Similarity=0.479  Sum_probs=125.9

Q ss_pred             CCHHHHHHHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7879999999997669--------------------59999999999998667424886389999999842754047787
Q gi|254780265|r   19 SDFVVAKFMNAIMYGG--------------------KKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTR   78 (156)
Q Consensus        19 ~~~lv~kliN~lMk~G--------------------KK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~   78 (156)
                      +.++|++|||.||.+|                    ||++|++||++||++|+.+|++||++||++||+|++|.+||+++
T Consensus        46 ~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~N~~P~~Ev~~~  125 (201)
T d1iqva_          46 NVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV  125 (201)
T ss_dssp             -CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf             00379999877643555432344430000113577629999999999999999862899189999999850344899997


Q ss_pred             EECCCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH
Q ss_conf             52463000001048579999999999999985---799998999999999997388--872630788999999988
Q gi|254780265|r   79 RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR  149 (156)
Q Consensus        79 r~gG~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR  149 (156)
                      ++||++||||++++|.||+++|||||+++|++   |++++|+++||+||++|++|+  |.||+||||+||+|+|||
T Consensus       126 r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~hk~A~aNR  201 (201)
T d1iqva_         126 MFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  201 (201)
T ss_dssp             EETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf             4288401267056788889999999999998754788787999999999999748788646763688899898568


SCOP domain information

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]