RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7 [Candidatus Liberibacter asiaticus str. psy62] (156 letters) >gnl|CDD|180003 PRK05302, PRK05302, 30S ribosomal protein S7; Validated. Length = 156 Score = 261 bits (669), Expect = 7e-71 Identities = 97/156 (62%), Positives = 122/156 (78%) Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60 M RRRRA REVLPDPK+ +V KF+N +M GKKSVA IVYGA D++E+K KDP+ Sbjct: 1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLE 60 Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120 +F +AL NV P EV++RRVGGA Y VP E+ +R QALA+RWL+ AARKR E TM +RL Sbjct: 61 VFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERL 120 Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 E++DAANNRG AV+KRE+TH++AEAN+AF+HYRW Sbjct: 121 ANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156 >gnl|CDD|162164 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle. This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. Length = 154 Score = 210 bits (537), Expect = 1e-55 Identities = 86/154 (55%), Positives = 114/154 (74%) Query: 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62 R+R+A R++ PDP + ++ KF+N +M GKKS+A SIVY AF+ + KK +DP+ +F Sbjct: 1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVF 60 Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122 QAL NV P EV++RRVGGA Y VP E+ R ALAIRWLI AARKR +M +RL Sbjct: 61 EQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLAN 120 Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 EI+DAANN G A++KRE+TH++AEAN+AF+HYRW Sbjct: 121 EILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154 >gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed. Length = 195 Score = 77.6 bits (192), Expect = 1e-15 Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 9/137 (6%) Query: 22 VVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77 +V + +N +M GKK A +IV AF+++EK+ K++P+ + A+ N P+ E Sbjct: 59 IVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTR 118 Query: 78 RRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RG 132 + GG +Y +++ +R LA+R++ AR+ +N+ ++ + L EII AANN + Sbjct: 119 IKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIAAANNDPKS 178 Query: 133 VAVRKREETHKVAEANR 149 AVRK+EE +VA++ R Sbjct: 179 YAVRKKEEIERVAKSAR 195 >gnl|CDD|130100 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7. Length = 186 Score = 74.0 bits (182), Expect = 1e-14 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 9/138 (6%) Query: 21 FVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVR 76 +V + +N +M GKK A IV AF+++EK+ ++P+ + A+ N P+ + Sbjct: 49 PIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKRTGENPIQVLVDAIENAGPREDTT 108 Query: 77 TRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131 GG Y +I+ R A+R + + AR+ RN+ ++ + L EII AAN + Sbjct: 109 RIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAEEIILAANGDSK 168 Query: 132 GVAVRKREETHKVAEANR 149 A++K+EE +VA++ R Sbjct: 169 SYAIKKKEELERVAKSAR 186 >gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional. Length = 193 Score = 54.4 bits (131), Expect = 1e-08 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 11/138 (7%) Query: 22 VVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77 +V + +N++M+ GKK +AV IV AF+++ K+P+ + A+ N P+ E T Sbjct: 57 IVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPR-EDST 115 Query: 78 R-RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131 R GG +++ R AI + AR+ RN T+ + L EII+A+ Sbjct: 116 RVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSN 175 Query: 132 GVAVRKREETHKVAEANR 149 A++K++E +VA+ANR Sbjct: 176 SYAIKKKDEVERVAKANR 193 >gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional. Length = 474 Score = 28.0 bits (63), Expect = 1.1 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 22 VVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62 ++A F+ AI G +AV+I+Y ++ KEK+ LF Sbjct: 435 ILADFLGAIGSGTGILLAVTIIYQYYETF-AKEKEQYGFLF 474 >gnl|CDD|177506 PHA03003, PHA03003, palmytilated EEV membrane glycoprotein; Provisional. Length = 369 Score = 27.3 bits (61), Expect = 1.9 Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 94 KRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVR 136 K+S L + L+ R+ ++TT + +I AA NRGV VR Sbjct: 229 KKSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVR 271 >gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase. Length = 612 Score = 27.2 bits (60), Expect = 1.9 Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 5 RRAVVREVLPDPKFSDFVVAK 25 R AV++ + PDPK +DFV A+ Sbjct: 269 REAVMKILKPDPKLADFVEAE 289 >gnl|CDD|164925 PHA02524, 43A, DNA polymerase subunit A; Provisional. Length = 498 Score = 26.5 bits (58), Expect = 2.8 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Query: 13 LPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDP 58 P+PK++ + + + ++ GKK+ Y FDLV+ DP Sbjct: 120 FPEPKYAKYEIDMISHVRLHNGKKT------YYIFDLVKDVGHWDP 159 >gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase. Length = 375 Score = 25.8 bits (56), Expect = 5.0 Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 78 RRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE 123 +R+G G I K +A +R +++ E IDRLG + Sbjct: 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD 225 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 25.5 bits (56), Expect = 7.3 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 11/60 (18%) Query: 76 RTRRVGGAAYSVP------GEITSKRSQALAIRWLIMAARK-RNETTMIDRLGGEIIDAA 128 V G V + S +AL + W MAA K R TM+ G II A Sbjct: 229 EKVNVAGGTEPVVNTASGWRQFVSGFREALTMAWRAMAANKMRTLLTML----GIIIGIA 284 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.134 0.381 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,633,685 Number of extensions: 161875 Number of successful extensions: 326 Number of sequences better than 10.0: 1 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 23 Length of query: 156 Length of database: 5,994,473 Length adjustment: 85 Effective length of query: 71 Effective length of database: 4,157,793 Effective search space: 295203303 Effective search space used: 295203303 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.2 bits)