RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
(156 letters)
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} (G:)
Length = 155
Score = 177 bits (451), Expect = 5e-46
Identities = 72/155 (46%), Positives = 103/155 (66%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
MSRR + DP + + +V +N I+ GKKS+A I+Y A +++K + +P++
Sbjct: 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLS 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
+ RQA+ VTP V+ RRVGG+ + VP EI S + +ALAIRWL+ AARKR M +L
Sbjct: 61 VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
E++DAA G AVRK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U
1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G
1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G*
2qbb_G* 2qbd_G ... (G:)
Length = 179
Score = 175 bits (445), Expect = 2e-45
Identities = 80/156 (51%), Positives = 108/156 (69%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
M RRR R++LPDPKF ++AKF+N +M GKKS A SIVY A + + ++ K +
Sbjct: 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
F AL NV P EV++RRVGG+ Y VP E+ R ALA+RW++ AARKR + +M RL
Sbjct: 61 AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
E+ DAA N+G AV+KRE+ H++AEAN+AF+HYRW
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell
cycle, cell division, chaperone, isomerase, rotamase,
ribonucleoprotein; 3.40A {Thermotoga maritima} (S:)
Length = 149
Score = 174 bits (442), Expect = 6e-45
Identities = 80/149 (53%), Positives = 110/149 (73%)
Query: 8 VVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALI 67
+ R++ PDP F D +VAK +N +M+ GKK++A IVYGAFD++ +K KKDP+ +FRQA+
Sbjct: 1 MGRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVE 60
Query: 68 NVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDA 127
NV P EVR RRVGGA Y VP E+ R +LA+RW++ AAR + M ++L EII A
Sbjct: 61 NVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAA 120
Query: 128 ANNRGVAVRKREETHKVAEANRAFSHYRW 156
NN G A++K+E+TH++AEANRAF+HYRW
Sbjct: 121 YNNTGTAIKKKEDTHRMAEANRAFAHYRW 149
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,;
2.50A {Geobacillus stearothermophilus} (A:)
Length = 155
Score = 170 bits (433), Expect = 7e-44
Identities = 83/155 (53%), Positives = 104/155 (67%)
Query: 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61
RR R+VLPDP ++ +V + +N I GKKS A I+Y AFD++ ++ KDP +
Sbjct: 1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEV 60
Query: 62 FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121
F QAL NV P EVR RRVGGA Y VP E+ R +L +RWL+ AR RNE T +RL
Sbjct: 61 FEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLA 120
Query: 122 GEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
EI DAANN G AV+KRE+THK AEAN+AF+HYRW
Sbjct: 121 NEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155
>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome,
translation, internal initiation; 7.30A {Saccharomyces
cerevisiae} PDB: 1s1h_G (F:)
Length = 150
Score = 155 bits (394), Expect = 2e-39
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQ 64
R A R + + M GKK AV I+ D++ ++P+ +
Sbjct: 1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVD 60
Query: 65 ALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMIDRLG 121
A+ N P+ + GGAA +++ R AI L + AR+ N T+ + L
Sbjct: 61 AITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLA 120
Query: 122 GEIIDAANNRG--VAVRKREETHKVAEANR 149
E+I+AA A++K++E +VA++NR
Sbjct: 121 EELINAAKGSSTSYAIKKKDELERVAKSNR 150
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (g:)
Length = 204
Score = 153 bits (388), Expect = 9e-39
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
S R A R + + M GKK + V IV AF+++ ++P+
Sbjct: 51 HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQ 110
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKR---NETTMI 117
+ A+IN P+ + G +++ R AI L AR+ N T+
Sbjct: 111 VLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 170
Query: 118 DRLGGEIIDAANNRG--VAVRKREETHKVAEANR 149
+ L E+I+AA A++K++E +VA++NR
Sbjct: 171 ECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center,
helix-turn- helix, ribosome; 2.10A {Pyrococcus
horikoshii} (A:)
Length = 218
Score = 142 bits (360), Expect = 1e-35
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
R + KK A +V AF ++EK+ K+P+
Sbjct: 65 HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMI--- 117
+ A+ N P+ + + GG Y V +I+ R +A+R + + A + T +
Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184
Query: 118 DRLGGEIIDAANN--RGVAVRKREETHKVAEANR 149
+ L EII AAN + A K+ E ++AE++R
Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A
{Thermus thermophilus} (A:)
Length = 151
Score = 133 bits (336), Expect = 1e-32
Identities = 68/147 (46%), Positives = 105/147 (71%)
Query: 10 REVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINV 69
R++ PD + D +V F+N IM GKK++A I Y A ++++K ++P+ +F+QA+ NV
Sbjct: 5 RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENV 64
Query: 70 TPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAAN 129
P+ EVR+RRVGGA Y VP E++ +R Q+LA+RWL+ AA +R E R+ E++DAA
Sbjct: 65 KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAE 124
Query: 130 NRGVAVRKREETHKVAEANRAFSHYRW 156
+G AV+K+E+ ++AEANRA++HYRW
Sbjct: 125 GKGGAVKKKEDVERMAEANRAYAHYRW 151
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} (A:)
Length = 262
Score = 28.9 bits (64), Expect = 0.35
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
R GGA Y G++ ++ ++ + T+M + ++++ G+
Sbjct: 70 ARRYTGGGAVYHDLGDLNF---------SVVRSSDDMDITSMFRTMNEAVVNSLRILGLD 120
Query: 135 VRKREETHKV 144
R E
Sbjct: 121 ARPGELNDVS 130
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A
{Bos taurus} (A:1-246)
Length = 246
Score = 25.0 bits (54), Expect = 4.3
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 75 VRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVA 134
R R GG Y G I +K + + + + + V
Sbjct: 71 ARRRSGGGTVYHDMGNINL---------TFFTTKKKYDRMENLKLVVRALKAVHPHLDVQ 121
Query: 135 VRKRE 139
KR
Sbjct: 122 ATKRF 126
>3ez0_A Uncharacterized protein with ferritin-like fold;
YP_832262.1, protein of unknown function with
ferritin-like fold, structural genomics; HET: UNL TLA;
2.33A {Arthrobacter SP} (A:78-225)
Length = 148
Score = 24.4 bits (53), Expect = 7.1
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 6 RAVVREVLPDPKFSDFVVAKFMNAI 30
R V+ ++ + ++ + + +A+
Sbjct: 51 RDVIEQIQASDETTEVLRERLRSAL 75
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.134 0.381
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,172,516
Number of extensions: 48077
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 24
Length of query: 156
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 75
Effective length of database: 2,217,844
Effective search space: 166338300
Effective search space used: 166338300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)