RPSBLAST alignment of GI: 254780265 and protein with PDBid: 2noq
>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G Length = 150
Score = 126 bits (317), Expect = 2e-30
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 16 PKFSDFVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTP 71
K ++ + N++M GKK AV I+ D++ ++P+ + A+ N P
Sbjct: 8 RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 67
Query: 72 QFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAA 128
+ + GGAA +++ R AI L + AR+ RN T+ + L E+I+AA
Sbjct: 68 REDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAA 127
Query: 129 NNRG--VAVRKREETHKVAEANR 149
A++K++E +VA++NR
Sbjct: 128 KGSSTSYAIKKKDELERVAKSNR 150