HHsearch alignment for GI: 254780266 and conserved domain: PTZ00067

>PTZ00067 40S ribosomal S23; Provisional.
Probab=100.00  E-value=9.7e-38  Score=241.92  Aligned_cols=101  Identities=31%  Similarity=0.633  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE-CCCCEEEEEECCCC--CCCCCCCEEEEEC-CC-
Q ss_conf             3786466667700068621247875675184567442432889996-69969999807888--7546467899953-78-
Q gi|254780266|r   13 KGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARL-TSGVEVIAYVPGEG--HNLQEHSVVMLCG-GR-   87 (124)
Q Consensus        13 kk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~L-sng~~v~ayIPGeG--hnlqehs~VLvrG-Gr-   87 (124)
T Consensus        29 k~~lg~~~K~~Pl~Gap~akGIvlekv~veaKqPNSAiRKcvrVqLikNgk~vtAfvPgdG~l~~i~EhdeVlv~g~Gr~  108 (143)
T PTZ00067         29 KAHTGTRYKANPFGGSSHAKGIVVEKIGVEAKQPNSAVRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRS  108 (143)
T ss_pred             HHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf             87616520038768985405278999885025886012158999991499199999169963112566888999833757


Q ss_pred             ---CCCCCCCEEEEEE--CCCCCCCCCCCCC
Q ss_conf             ---3888875478980--4001443342001
Q gi|254780266|r   88 ---VKDLPGVKYRVIR--GVLDAQGVKNRKQ  113 (124)
Q Consensus        88 ---v~DlPGVry~ivR--G~~D~~gv~~Rk~  113 (124)
T Consensus       109 G~s~gDiPGVr~kvvkV~~vSL~aL~kgkkE  139 (143)
T PTZ00067        109 GHAVGDIPGVRFKIVKVSGVSLLALYRQKKE  139 (143)
T ss_pred             CCCCCCCCCEEEEEEEECCEEHHHHHHCCCC
T ss_conf             7756889960799999998879999704132