HHsearch alignment for GI: 254780266 and conserved domain: cd00319

>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.
Probab=100.00  E-value=0  Score=319.72  Aligned_cols=94  Identities=72%  Similarity=1.132  Sum_probs=91.5

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEE
Q ss_conf             66667700068621247875675184567442432889996699699998078887546467899953783888875478
Q gi|254780266|r   18 ACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYR   97 (124)
Q Consensus        18 ~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VLvrGGrv~DlPGVry~   97 (124)
T Consensus         2 ~k~k~~~L~g~Pq~kGi~l~v~~~~pKKPNSA~RKvarV~L~ng~~vtayIPG~gh~lqeh~~VLvrGGr~~DlPGVry~   81 (95)
T cd00319           2 KKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYH   81 (95)
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEE
T ss_conf             75448854589761668899876568998830020899996089899998288987754378899948876889983189


Q ss_pred             EEECCCCCCCCCCC
Q ss_conf             98040014433420
Q gi|254780266|r   98 VIRGVLDAQGVKNR  111 (124)
Q Consensus        98 ivRG~~D~~gv~~R  111 (124)
T Consensus        82 virG~~D~~gv~~r   95 (95)
T cd00319          82 IVRGVYDAAGVKDR   95 (95)
T ss_pred             EEEEEECCCCCCCC
T ss_conf             97260025565689