HHsearch alignment for GI: 254780266 and conserved domain: cd03368
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=100.00 E-value=0 Score=347.11 Aligned_cols=108 Identities=70% Similarity=1.107 Sum_probs=103.9
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 50235426873786466667700068621247875675184567442432889996699699998078887546467899
Q gi|254780266|r 3 TVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVM 82 (124)
Q Consensus 3 TinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~VL 82 (124)
T Consensus 1 T~nQl~~~~r~~~~-~k~k~~aL~g~Pq~kGi~l~v~~~~pKKPNSA~RKvarV~Lsng~~vtAyIPG~ghnlqehs~VL 79 (108)
T cd03368 1 TINQLIRKGRKKKK-KKSKSPALEGCPQKKGVCLKVYTTTPKKPNSALRKVARVRLSNGKEVTAYIPGEGHNLQEHSVVL 79 (108)
T ss_pred CCHHHHCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEE
T ss_conf 91154134887766-55778322379762569988765166899841001799992389899998068877755478899
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 95378388887547898040014433420
Q gi|254780266|r 83 LCGGRVKDLPGVKYRVIRGVLDAQGVKNR 111 (124)
Q Consensus 83 vrGGrv~DlPGVry~ivRG~~D~~gv~~R 111 (124)
T Consensus 80 vrGGrv~DlPGVry~vvrG~~D~~gv~~R 108 (108)
T cd03368 80 VRGGRVKDLPGVRYHIVRGVLDLAGVKNR 108 (108)
T ss_pred EECCCCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 95877788998348996063115565689