HHSEARCH alignment of GI: 254780266 and SCOP domain: d2uubl1

Alignment
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=395.87  Aligned_cols=118  Identities=69%  Similarity=1.083  Sum_probs=114.6

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEE
Q ss_conf             55023542687378646666770006862124787567518456744243288999669969999807888754646789
Q gi|254780266|r    2 PTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVV   81 (124)
Q Consensus         2 pTinQlir~~Rkk~~~~~~K~~~L~~~PqkkGVclkv~~~~PKKPNSA~RKvarV~Lsng~~v~ayIPGeGhnlqehs~V   81 (124)
                      ||||||+|++|+++. .+.++++|++|||++|||++++|++|||||||+||||+|+||||++||||||||||||||||+|
T Consensus         1 PTinQL~rk~R~kk~-~k~k~~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrLsng~~v~AyIPG~GhnlqEHs~V   79 (118)
T d2uubl1           1 PTINQLVRKGREKVR-KKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVV   79 (118)
T ss_dssp             CCHHHHHHHCCCCCC-CCCSCCCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEETTSCEEEEECCSSCCCCCTTCEE
T ss_pred             CCHHHHCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEE
T ss_conf             987671036888776-6788852236976043888988822688861021389999629909999818997674557889


Q ss_pred             EEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             995378388887547898040014433420012112561
Q gi|254780266|r   82 MLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGA  120 (124)
Q Consensus        82 LvrGGrv~DlPGVry~ivRG~~D~~gv~~Rk~~RSkYG~  120 (124)
                      ||||||++|||||+||+|||+|||++|.+|+++||||||
T Consensus        80 LvrGGrv~DlPGVry~vvrG~~D~~~v~~Rk~~RSkYGt  118 (118)
T d2uubl1          80 LIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT  118 (118)
T ss_dssp             EECCCCCTTSTTCCEEBCTTSTTCCCCTTCCSSTTTTTC
T ss_pred             EEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             994886666777478997231014333665326676789


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]