RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str. psy62] (124 letters) >2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (L:23-135) Length = 113 Score = 141 bits (358), Expect = 2e-35 Identities = 75/104 (72%), Positives = 89/104 (85%) Query: 21 KVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSV 80 KV AL+G P +RGVC V TVTPKKPNSALRKV K RLTSG EV AY+PGEGHNLQEHSV Sbjct: 1 KVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSV 60 Query: 81 VMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGAERPK 124 V++ GGRVKDLPGV+Y ++RGV DA GVK+RK++RS+YG ++PK Sbjct: 61 VLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPK 104 >2zkq_l 40S ribosomal protein S23E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_L (l:) Length = 143 Score = 106 bits (266), Expect = 1e-24 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Query: 6 QLIRKPRK-----------GSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVI 54 + +R R+ K G +G+ L V K+PNSA+RK + Sbjct: 11 RKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 70 Query: 55 KARLTS-GVEVIAYVPGEG--HNLQEHSVVMLCG-----GRVKDLPGVKYRVIRGVLD-A 105 + +L G ++ A+VP +G + ++E+ V++ G V D+PGV+++V++ Sbjct: 71 RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 130 Query: 106 QGVKNRKQARSR 117 + K+ R R Sbjct: 131 LALYKGKKERPR 142 >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:258-298,A:366-472) Length = 148 Score = 28.3 bits (63), Expect = 0.38 Identities = 4/18 (22%), Positives = 8/18 (44%) Query: 61 GVEVIAYVPGEGHNLQEH 78 + V+ P G L ++ Sbjct: 24 NIPVVLSHPYVGQFLHDN 41 >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:119-214,B:273-507) Length = 331 Score = 26.8 bits (58), Expect = 0.96 Identities = 7/23 (30%), Positives = 12/23 (52%) Query: 61 GVEVIAYVPGEGHNLQEHSVVML 83 G++ I P G NL +H ++ Sbjct: 120 GIDTIVNNPSVGRNLSDHLLLPA 142 >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:59-215,A:270-482) Length = 370 Score = 26.3 bits (57), Expect = 1.3 Identities = 9/24 (37%), Positives = 15/24 (62%) Query: 61 GVEVIAYVPGEGHNLQEHSVVMLC 84 G+EV+ PG G +LQ+H ++ Sbjct: 181 GIEVLVDSPGVGEHLQDHPEGVVQ 204 >1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, copper, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} (A:) Length = 309 Score = 25.4 bits (55), Expect = 3.0 Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 36 LRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPG 93 +R+ VTPK+ ++ ++ + VI + P + H ++ C Sbjct: 20 IRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSY 77 >1vqs_A Hypothetical protein AGR_L_1239; NP_356412.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} (A:) Length = 116 Score = 24.4 bits (53), Expect = 5.3 Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 7/53 (13%) Query: 29 PQKRG--VCLRVYTVTPKKPNSAL----RKVIKARLTSGVEVIAY-VPGEGHN 74 +R Y + + L + I+ + + E++ Y G Sbjct: 8 HHHHHXFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPI 60 >2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} (A:) Length = 207 Score = 24.5 bits (53), Expect = 5.5 Identities = 6/17 (35%), Positives = 8/17 (47%) Query: 96 YRVIRGVLDAQGVKNRK 112 YRVI +L +Q Sbjct: 17 YRVINSLLISQNADPAS 33 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 24.1 bits (52), Expect = 7.1 Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 29/102 (28%) Query: 32 RGV--CLRVYTVTPKKPNSAL------RKVIKARLTSGVEVIAYVPGEGHNLQEHSVVML 83 +G+ R + + K S ++ + R ++ +V E L+ Sbjct: 4 KGILTTAREHHSSVKYA-SPNLNMKYRKRQLVTREA---QIKDWVENELEALKLE----- 54 Query: 84 CGGRVKDLPG------VKYRVIRGVLDAQGVKNRKQARSRYG 119 +++P + R + + + A+ ++G Sbjct: 55 ----AEEIPSEDQNEFLLERTRE--IHNEAESQLRAAQQQWG 90 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 24.0 bits (51), Expect = 8.1 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 76 QEHSVVMLCGGRVKDLPGV 94 QE ++ +L +++ G Sbjct: 146 QEKALPLLLSNPPRNMIGQ 164 >1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:94-232,A:592-791) Length = 339 Score = 23.7 bits (51), Expect = 8.1 Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 2/36 (5%) Query: 84 CGGR--VKDLPGVKYRVIRGVLDAQGVKNRKQARSR 117 + +KY ++R L + + Sbjct: 4 ASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDP 39 >2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl hydrolase families 5, 30, 39 and 51; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* (A:1-25,A:413-519) Length = 132 Score = 23.7 bits (51), Expect = 9.1 Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%) Query: 59 TSGVEVIAYVPGEGHNLQEHSVVMLCGGRVK-DLPGVKYRVIRGVLDA 105 + V A+ G + Q +V + +P + I Sbjct: 84 YTIGNVWAFDRGSSNITQRTPIVNIKDNTFTYTVPALTACHIVLEAAE 131 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 915,798 Number of extensions: 37920 Number of successful extensions: 94 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 16 Length of query: 124 Length of database: 4,956,049 Length adjustment: 74 Effective length of query: 50 Effective length of database: 2,454,479 Effective search space: 122723950 Effective search space used: 122723950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.4 bits)