RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str. psy62] (124 letters) >d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Length = 118 Score = 164 bits (417), Expect = 2e-42 Identities = 82/118 (69%), Positives = 98/118 (83%), Gaps = 1/118 (0%) Query: 2 PTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTSG 61 PT+NQL+RK R+ R +KV AL+G P +RGVC V TVTPKKPNSALRKV K RLTSG Sbjct: 1 PTINQLVRKGRE-KVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSG 59 Query: 62 VEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYG 119 EV AY+PGEGHNLQEHSVV++ GGRVKDLPGV+Y ++RGV DA GVK+RK++RS+YG Sbjct: 60 YEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYG 117 >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Score = 32.6 bits (73), Expect = 0.010 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%) Query: 61 GVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVK 95 + V+ P G L V+ RV + ++ Sbjct: 281 NIPVVLSHPYVGQCLVGK--VLDGDFRVTGINALR 313 >d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 154 Score = 27.3 bits (60), Expect = 0.42 Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 36 LRVYTVTPKKPNSALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPG 93 +R+ VTPK+ ++ ++ + VI + P + H ++ C Sbjct: 22 IRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSY 79 >d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]} Length = 202 Score = 24.5 bits (53), Expect = 3.2 Identities = 6/17 (35%), Positives = 8/17 (47%) Query: 96 YRVIRGVLDAQGVKNRK 112 YRVI +L +Q Sbjct: 12 YRVINSLLISQNADPAS 28 >d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Score = 24.3 bits (52), Expect = 3.4 Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 47 NSALRKVIKARLTSGVEVIAYVPG 70 N+A+R V+++ LT G+EV+ G Sbjct: 18 NAAIRGVVRSALTEGLEVMGIYDG 41 >d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Score = 23.1 bits (49), Expect = 6.8 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 47 NSALRKVIKARLTSGVEVIAYVPG 70 N+A+R V++ + GVEV G Sbjct: 17 NAAIRSVVRKAIYHGVEVYGVYHG 40 >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 327 Score = 23.1 bits (50), Expect = 7.5 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 8/34 (23%) Query: 32 RGVCLR--------VYTVTPKKPNSALRKVIKAR 57 + +C+R V + P++ +R+ I A Sbjct: 33 KFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD 66 >d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]} Length = 371 Score = 23.0 bits (49), Expect = 7.8 Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 49 ALRKVIKARLTSGVEVIAYVPGEGHNLQEHSVVMLCGGRV 88 L +A + SG++ + + + +V++ GR+ Sbjct: 250 GLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRL 289 >d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea virus [TaxId: 11099]} Length = 588 Score = 22.9 bits (49), Expect = 9.0 Identities = 9/26 (34%), Positives = 11/26 (42%) Query: 51 RKVIKARLTSGVEVIAYVPGEGHNLQ 76 V RL S Y+P +G LQ Sbjct: 554 WLVKPDRLISSKTGHLYIPDKGFTLQ 579 >d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE {Escherichia coli [TaxId: 562]} Length = 322 Score = 22.7 bits (48), Expect = 9.5 Identities = 5/27 (18%), Positives = 11/27 (40%) Query: 4 VNQLIRKPRKGSFRACAKVTALRGNPQ 30 ++ L+ G ++ + GNP Sbjct: 63 LDALLGAISHGEIPLRWRLLVILGNPP 89 >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 Score = 22.5 bits (47), Expect = 9.9 Identities = 5/21 (23%), Positives = 10/21 (47%) Query: 1 MPTVNQLIRKPRKGSFRACAK 21 +P ++ L + G A A+ Sbjct: 1 LPDMDTLRERLLAGDRAALAR 21 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 442,625 Number of extensions: 19099 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 12 Length of query: 124 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 49 Effective length of database: 1,377,846 Effective search space: 67514454 Effective search space used: 67514454 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.4 bits)