BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12
[Candidatus Liberibacter asiaticus str. psy62]
         (124 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 124

 Score =  249 bits (635), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTS 60
           MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTS
Sbjct: 1   MPTVNQLIRKPRKGSFRACAKVTALRGNPQKRGVCLRVYTVTPKKPNSALRKVIKARLTS 60

Query: 61  GVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGA 120
           GVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGA
Sbjct: 61  GVEVIAYVPGEGHNLQEHSVVMLCGGRVKDLPGVKYRVIRGVLDAQGVKNRKQARSRYGA 120

Query: 121 ERPK 124
           ERPK
Sbjct: 121 ERPK 124


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 25.0 bits (53), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 70 GEGHNLQEHSVVMLCGGRVKDLPGVKYRVI 99
          G+GH ++E   +    GRV D  G+++RV+
Sbjct: 54 GKGHLVREIDALDGLMGRVADAAGIQFRVL 83


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 23.9 bits (50), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 53  VIKARLTSGVEVIAYVP 69
           +I+++L  GVEVIA +P
Sbjct: 457 LIRSKLREGVEVIAILP 473


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 21.6 bits (44), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 17/23 (73%)

Query: 87  RVKDLPGVKYRVIRGVLDAQGVK 109
           +++++ G+  +VIRG+++  G K
Sbjct: 562 QIRNVIGMGGKVIRGIVEQTGAK 584


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,829
Number of Sequences: 1233
Number of extensions: 2483
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 328,796
effective HSP length: 64
effective length of query: 60
effective length of database: 249,884
effective search space: 14993040
effective search space used: 14993040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)