HHsearch alignment for GI: 254780267 and conserved domain: COG2190
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism].
Probab=91.93 E-value=0.17 Score=29.50 Aligned_cols=66 Identities=32% Similarity=0.505 Sum_probs=39.5
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCE----EECCEEEEEECCCEEEEEECCCCCEEEEE------------------
Q ss_conf 26870462567740367641000124420----10434899973772689998998199999------------------
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLV----VEGQTLLIIEAMKTMNHIVAPCSGKVQDI------------------ 147 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~V----k~G~~l~iiEAMKm~n~I~a~~~G~I~~i------------------ 147 (171)
T Consensus 6 ~~i~sP~~G~vv--------~Ls~VpD~vFs~k~mGdGiAI~---P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiL 74 (156)
T COG2190 6 EEIYSPLSGEVV--------PLSDVPDPVFSEKMVGDGVAIK---PSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEIL 74 (156)
T ss_pred EEEECCCCCEEE--------ECHHCCCHHHHCCCCCCCEEEE---CCCCEEEECCCCEEEEEEECCCEEEEECCCCCEEE
T ss_conf 799764772488--------8104874676415634867994---68995981268589998517847999838995999
Q ss_pred -----------------ECCCCCCCCCCCEEEEEEE
Q ss_conf -----------------8489868369972999953
Q gi|254780267|r 148 -----------------NVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 148 -----------------~v~~G~~V~~gq~L~~i~~ 166 (171)
T Consensus 75 iHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 75 IHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EEECEEEEEECCCCEEEEEECCCEECCCCEEEEECH
T ss_conf 995640586889324787507998815989899979