HHsearch alignment for GI: 254780267 and conserved domain: PRK05352
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional.
Probab=97.56 E-value=0.00022 Score=47.06 Aligned_cols=57 Identities=32% Similarity=0.384 Sum_probs=39.0
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10001244201043489997377268999899819999984898683699729999534788
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDN 170 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~~ 170 (171)
T Consensus 43 kl~VkeGD~V~~Gq~Lf~dK~~-~~v~~~SPvSG~V~~I~r--G~kR~i--lsIvIe~d~d~ 99 (448)
T PRK05352 43 TMKVKEGDKVKKGQPLFEDKKN-PGVKFTAPASGTVSAINR--GEKRVL--QSVVIEVEGDE 99 (448)
T ss_pred CEEECCCCEECCCCEEEECCCC-CCEEEECCCCEEEEEEEC--CCCCCE--EEEEEEECCCC
T ss_conf 5685579997479855653898-962696889829952205--887413--58999966874