HHsearch alignment for GI: 254780267 and conserved domain: PRK09578
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed.
Probab=97.81 E-value=9.6e-05 Score=49.22 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC----------------C------------------
Q ss_conf 546626870462567740367641000124420104348999737----------------7------------------
Q gi|254780267|r 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM----------------K------------------ 131 (171)
Q Consensus 86 ~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM----------------K------------------ 131 (171)
T Consensus 60 a~~~v~l~~~v~G~v-------~~v~v~~Gd~V~kGq~La~lD~~~~~a~~~~a~a~l~~A~a~~~~A~~~~~R~~~L~~ 132 (385)
T PRK09578 60 AYRQAEVRARVAGIV-------TARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAAADKRRRYDDLVR 132 (385)
T ss_pred EEEEEEEEEECCEEE-------EEEEECCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 879999996644699-------9998079998738988999853469999999999999999999999999999999886
Q ss_pred -------------------------------------EEEEEECCCCCEEEEEECCCCCCCCCCC--EEEEEEEC
Q ss_conf -------------------------------------2689998998199999848986836997--29999534
Q gi|254780267|r 132 -------------------------------------TMNHIVAPCSGKVQDINVKDGQSVEYGD--ALLVLEKT 167 (171)
Q Consensus 132 -------------------------------------m~n~I~a~~~G~I~~i~v~~G~~V~~gq--~L~~i~~~ 167 (171)
T Consensus 133 ~~~is~~~~~~a~~~~~~a~a~l~~A~a~l~~A~~~l~~t~i~AP~~G~V~~~~v~~G~~v~~~~~~~l~~i~~~ 207 (385)
T PRK09578 133 DRAVSERDHTEAVADERQAKAEVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCEECCCCCCCEEEEEEC
T ss_conf 366326789999999999999999999999988875410352389774588888178865668887314999826