HHsearch alignment for GI: 254780267 and conserved domain: PRK11556
>PRK11556 multidrug efflux system subunit MdtA; Provisional.
Probab=97.85 E-value=3.7e-05 Score=51.75 Aligned_cols=76 Identities=29% Similarity=0.394 Sum_probs=59.7
Q ss_pred CCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCC---------------------------------
Q ss_conf 45466268704625677403676410001244201043489997377---------------------------------
Q gi|254780267|r 85 SPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMK--------------------------------- 131 (171)
Q Consensus 85 ~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMK--------------------------------- 131 (171)
T Consensus 83 ~a~~~v~v~~~VsG~I-------~~i~v~~Gd~VkkGqvLa~iD~~~~~~~l~qA~A~l~~a~A~l~~A~~~~~R~~~L~ 155 (415)
T PRK11556 83 TAANTVTVRSRVDGQL-------MALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDQATLANARRDLARYQQLA 155 (415)
T ss_pred EEEEEEEEEEEEEEEE-------EEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8646999987850299-------999858989978999999988357899999999999999989999999999999987
Q ss_pred --------------------------------------EEEEEECCCCCEEEEEECCCCCCCCCCC--EEEEEEEC
Q ss_conf --------------------------------------2689998998199999848986836997--29999534
Q gi|254780267|r 132 --------------------------------------TMNHIVAPCSGKVQDINVKDGQSVEYGD--ALLVLEKT 167 (171)
Q Consensus 132 --------------------------------------m~n~I~a~~~G~I~~i~v~~G~~V~~gq--~L~~i~~~ 167 (171)
T Consensus 156 ~~~~iS~~~ld~~~a~~~~A~A~l~~a~a~l~~A~~~L~~t~I~AP~~GvV~~r~v~~G~~V~~G~~~pl~~i~~~ 231 (415)
T PRK11556 156 KTNLVSRQELDAQQALVSETEGTIKADEAAVASAQLQLDWSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT 231 (415)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCEECCCCCCCEEEEECC
T ss_conf 6599569999989999999999999999999999875248899826651577688589973777886526999527