HHsearch alignment for GI: 254780267 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.98 E-value=0.00077 Score=43.73 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEE-EEECCCEE
Q ss_conf 268704625677403676410001244201043489-99737726
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLL-IIEAMKTM 133 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~-iiEAMKm~ 133 (171)
T Consensus 245 T~iraP~dG~Va~-------r~vqvG~~vS~g~p~ma~V~~~~~y 282 (379)
T TIGR00998 245 TEIRAPFDGYVAR-------RKVQVGQVVSPGQPLMAVVPAEQMY 282 (379)
T ss_pred CEEECCCCCEEEE-------EECCCCCEECCCCCEEEEECCCCEE
T ss_conf 5643672205877-------6307886115897257778454048