HHsearch alignment for GI: 254780267 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.94 E-value=0.0064 Score=38.15 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 899989981999998489868369972999953
Q gi|254780267|r 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 134 n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
T Consensus 245 T~iraP~dG~Va~r~vqvG~~vS~g~p~ma~V~ 277 (379)
T TIGR00998 245 TEIRAPFDGYVARRKVQVGQVVSPGQPLMAVVP 277 (379)
T ss_pred CEEECCCCCEEEEEECCCCCEECCCCCEEEEEC
T ss_conf 564367220587763078861158972577784