HHsearch alignment for GI: 254780267 and conserved domain: TIGR00998

>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.94  E-value=0.0064  Score=38.15  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf             899989981999998489868369972999953
Q gi|254780267|r  134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK  166 (171)
Q Consensus       134 n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~  166 (171)
T Consensus       245 T~iraP~dG~Va~r~vqvG~~vS~g~p~ma~V~  277 (379)
T TIGR00998       245 TEIRAPFDGYVARRKVQVGQVVSPGQPLMAVVP  277 (379)
T ss_pred             CEEECCCCCEEEEEECCCCCEECCCCCEEEEEC
T ss_conf             564367220587763078861158972577784