HHsearch alignment for GI: 254780267 and conserved domain: TIGR01936

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=94.58  E-value=0.025  Score=34.52  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf             000124420104348999737726899989981999998489
Q gi|254780267|r  110 PFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD  151 (171)
Q Consensus       110 ~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~  151 (171)
T Consensus        43 ~~v~~GD~V~~G~~L~~~K~~P~-v~fTsPvsG~V~ai~RG~   83 (466)
T TIGR01936        43 MKVRPGDKVKAGQVLFEDKKNPG-VKFTSPVSGEVVAINRGA   83 (466)
T ss_pred             EEEEECCEEEECCHHHHHCCCCC-CEEECCCCCEEEEEECCC
T ss_conf             67700770100222333026898-568617775699974189