HHsearch alignment for GI: 254780267 and conserved domain: TIGR02876
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=96.52 E-value=0.0079 Score=37.58 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCCCCC-HHHHH-HHHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 632139-89999-9999998659708999509969999706776521133202344455422233221122344444544
Q gi|254780267|r 4 KKQKIN-LTLIR-NLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLI 81 (171)
Q Consensus 4 ~~~~md-i~~Ik-~Li~~~~es~l~eleie~~~~kI~I~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (171)
T Consensus 137 ~k~~~Ds~~~~~~~L~~~~~ei~Wv~v~~~Gt~l~~kvvEk~~~k------------i---------------------~ 183 (406)
T TIGR02876 137 KKFSIDSVYKLERKLLDRVPEIMWVGVRVRGTKLVIKVVEKQEPK------------I---------------------K 183 (406)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEECCCCC------------C---------------------C
T ss_conf 203688988999999845994899999985309999998213332------------4---------------------4
Q ss_pred CCCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEE--EEE
Q ss_conf 3334546626870462567740367641000124420104348--999
Q gi|254780267|r 82 PLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTL--LII 127 (171)
Q Consensus 82 ~~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l--~ii 127 (171)
T Consensus 184 ~~~~~~ep~niVAkk~G~i~~~~v~~G~~~Vk~GD~VkkGd~Li~G~~ 231 (406)
T TIGR02876 184 EVKKKAEPRNIVAKKDGVIKRVYVTSGEAVVKKGDVVKKGDLLISGIL 231 (406)
T ss_pred CCCCCCCCCCEEEECCEEEEEEEEECCEEEECCCCEECCCCEEEEECC
T ss_conf 568767772326633408888655111648548887657717871110