HHsearch results for GI: 254780267 and protein with PDBid: 3lnn_A
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=97.85 E-value=1.7e-05 Score=52.49 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=58.5
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCE-----------------------------------
Q ss_conf 662687046256774036764100012442010434899973772-----------------------------------
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKT----------------------------------- 132 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm----------------------------------- 132 (171)
....|.|+..|++- ..+|+.||.|++||+|+.|+..-+
T Consensus 56 ~~~~l~~~v~G~V~-------~i~v~~G~~V~kGq~L~~id~~el~~a~~~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~ 128 (359)
T 3lnn_A 56 KLVKVLPPLAGRIV-------SLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK 128 (359)
T ss_dssp SEEEECCSSCEEEE-------ECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred EEEEEECCCCEEEE-------EEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79999677778999-------99989919988999899998599999999999999878877789999987642332032
Q ss_pred -----------------------------------------EEEEECCCCCEEEEEECCCCCCCCCCCE-EEEEEE
Q ss_conf -----------------------------------------6899989981999998489868369972-999953
Q gi|254780267|r 133 -----------------------------------------MNHIVAPCSGKVQDINVKDGQSVEYGDA-LLVLEK 166 (171)
Q Consensus 133 -----------------------------------------~n~I~a~~~G~I~~i~v~~G~~V~~gq~-L~~i~~ 166 (171)
...|.||++|+|..+.+..|+.|..|++ |+.+-.
T Consensus 129 ~~~~~~~~~~~~a~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~g~~v~~~~~~l~~i~d 204 (359)
T 3lnn_A 129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD 204 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCEEEECCCEEEEEEC
T ss_conf 3578887655545667778899998777654022343024349998565775214200138357631420368741