Query gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs 136 out of 3810
Neff 8.2
Searched_HMMs 23785
Date Tue May 24 10:57:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780267.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.9 3.8E-28 1.6E-32 190.0 9.1 78 88-165 3-80 (80)
2 3hbl_A Pyruvate carboxylase; T 99.9 2E-25 8.6E-30 173.4 10.7 81 82-169 1070-1150(1150)
3 2qf7_A Pyruvate carboxylase pr 99.9 5.9E-24 2.5E-28 164.6 9.7 75 83-164 1089-1163(1165)
4 3bg3_A Pyruvate carboxylase, m 99.9 6.2E-24 2.6E-28 164.5 4.4 76 83-165 643-718 (718)
5 3n6r_A Propionyl-COA carboxyla 99.9 1.7E-22 7.3E-27 155.7 9.0 74 85-165 608-681 (681)
6 1dcz_A Transcarboxylase 1.3S s 99.8 1E-20 4.2E-25 145.0 9.1 72 86-164 5-76 (77)
7 2ejm_A Methylcrotonoyl-COA car 99.8 1.5E-20 6.3E-25 143.9 7.8 76 88-170 13-88 (99)
8 2d5d_A Methylmalonyl-COA decar 99.8 1.9E-19 7.9E-24 137.2 8.6 70 88-164 4-73 (74)
9 2jku_A Propionyl-COA carboxyla 99.8 1.2E-19 5.1E-24 138.4 1.9 70 89-165 25-94 (94)
10 1z6h_A Biotin/lipoyl attachmen 99.8 1.9E-18 7.9E-23 131.2 8.0 71 91-168 1-71 (72)
11 2kcc_A Acetyl-COA carboxylase 99.7 5.8E-18 2.4E-22 128.2 7.5 73 88-168 4-76 (84)
12 2dn8_A Acetyl-COA carboxylase 99.7 1.1E-16 4.4E-21 120.5 9.8 74 87-168 15-88 (100)
13 1iyu_A E2P, dihydrolipoamide a 99.7 1.4E-16 5.8E-21 119.8 9.0 74 91-171 3-79 (79)
14 2k7v_A Dihydrolipoyllysine-res 99.6 7.3E-17 3.1E-21 121.5 3.0 73 90-169 3-75 (85)
15 1qjo_A Dihydrolipoamide acetyl 99.5 1.9E-14 8E-19 106.8 5.5 61 109-169 19-79 (80)
16 1gjx_A Pyruvate dehydrogenase; 99.5 2.7E-15 1.1E-19 112.0 1.1 61 109-169 20-80 (81)
17 1k8m_A E2 component of branche 99.5 3.4E-14 1.4E-18 105.3 6.3 62 109-170 23-84 (93)
18 1ghj_A E2, E2, the dihydrolipo 99.4 2.7E-13 1.1E-17 99.8 7.4 60 109-168 20-79 (79)
19 2dnc_A Pyruvate dehydrogenase 99.3 2.5E-12 1.1E-16 93.9 6.6 62 109-170 26-88 (98)
20 1y8o_B Dihydrolipoyllysine-res 99.3 9.8E-12 4.1E-16 90.4 7.3 61 109-169 46-107 (128)
21 3crk_C Dihydrolipoyllysine-res 99.2 1.4E-11 5.9E-16 89.4 7.2 62 109-170 24-86 (87)
22 2dne_A Dihydrolipoyllysine-res 99.2 3.2E-11 1.3E-15 87.2 5.4 60 109-168 26-86 (108)
23 1pmr_A Dihydrolipoyl succinylt 99.1 1.5E-12 6.1E-17 95.4 -1.8 58 109-166 21-78 (80)
24 3dva_I Dihydrolipoyllysine-res 98.9 7.2E-11 3E-15 85.1 0.0 61 109-169 21-81 (428)
25 1zy8_K Pyruvate dehydrogenase 98.9 1.2E-10 5.2E-15 83.7 0.0 61 109-169 22-83 (229)
26 2k32_A A; NMR {Campylobacter j 98.4 2.8E-07 1.2E-11 63.3 5.6 70 91-168 3-103 (116)
27 3fmc_A Putative succinylglutam 97.9 4.9E-05 2E-09 49.7 8.7 69 87-165 288-362 (368)
28 3h9i_A Cation efflux system pr 97.9 1.1E-05 4.5E-10 53.7 4.7 72 89-167 121-241 (407)
29 3lnn_A Membrane fusion protein 97.8 1.7E-05 7.1E-10 52.5 5.0 72 88-166 56-204 (359)
30 3cdx_A Succinylglutamatedesucc 97.8 0.00016 6.9E-09 46.5 9.1 72 87-168 265-340 (354)
31 2qj8_A MLR6093 protein; NP_106 97.6 0.00027 1.1E-08 45.2 7.6 70 87-166 255-328 (332)
32 1zko_A Glycine cleavage system 97.4 0.00017 7.1E-09 46.4 4.7 58 112-169 53-117 (136)
33 1f3z_A EIIA-GLC, glucose-speci 97.3 0.00031 1.3E-08 44.8 5.8 57 109-166 97-161 (161)
34 3hgb_A Glycine cleavage system 97.3 0.00021 8.7E-09 45.9 4.7 58 112-169 67-131 (155)
35 3klr_A Glycine cleavage system 97.3 0.00023 9.5E-09 45.6 4.7 57 112-168 40-103 (125)
36 1ax3_A Iiaglc, glucose permeas 97.3 0.00018 7.6E-09 46.2 4.2 58 109-166 97-162 (162)
37 3a7l_A H-protein, glycine clea 97.3 0.00023 9.9E-09 45.5 4.7 57 112-168 45-108 (128)
38 3mxu_A Glycine cleavage system 97.3 0.00026 1.1E-08 45.3 4.7 58 111-168 61-125 (143)
39 1onl_A Glycine cleavage system 97.3 0.00029 1.2E-08 45.0 4.8 58 111-168 43-107 (128)
40 1vf7_A Multidrug resistance pr 97.2 0.00019 8E-09 46.1 3.7 43 124-167 35-77 (369)
41 3fpp_A Macrolide-specific effl 97.2 0.0004 1.7E-08 44.1 4.9 32 90-128 32-63 (341)
42 2d5d_A Methylmalonyl-COA decar 97.2 0.0003 1.2E-08 44.9 3.9 35 133-167 5-39 (74)
43 1dcz_A Transcarboxylase 1.3S s 97.1 0.00028 1.2E-08 45.1 3.7 34 133-166 8-41 (77)
44 1hpc_A H protein of the glycin 97.1 0.00052 2.2E-08 43.4 4.8 56 113-168 45-107 (131)
45 3n6r_A Propionyl-COA carboxyla 97.1 0.00043 1.8E-08 43.9 4.3 33 134-166 613-645 (681)
46 2dn8_A Acetyl-COA carboxylase 97.0 0.00021 8.9E-09 45.8 2.2 33 89-129 54-86 (100)
47 3lnn_A Membrane fusion protein 96.9 0.0014 5.7E-08 40.9 5.3 45 123-167 46-91 (359)
48 2f1m_A Acriflavine resistance 96.9 0.00034 1.4E-08 44.6 2.2 71 90-167 23-166 (277)
49 2k32_A A; NMR {Campylobacter j 96.9 0.00079 3.3E-08 42.3 4.0 36 88-130 66-102 (116)
50 2gpr_A Glucose-permease IIA co 96.8 0.0027 1.1E-07 39.1 6.6 54 109-165 92-154 (154)
51 1z6h_A Biotin/lipoyl attachmen 96.8 0.001 4.3E-08 41.6 4.1 32 90-128 37-68 (72)
52 2kcc_A Acetyl-COA carboxylase 96.7 0.00059 2.5E-08 43.1 2.2 35 88-130 41-75 (84)
53 2jku_A Propionyl-COA carboxyla 96.6 0.00078 3.3E-08 42.4 2.6 33 89-128 62-94 (94)
54 2qf7_A Pyruvate carboxylase pr 96.5 0.0022 9.3E-08 39.6 4.3 32 135-166 1097-1128(1165)
55 2ejm_A Methylcrotonoyl-COA car 96.5 0.0012 5E-08 41.3 2.7 37 87-130 49-85 (99)
56 2auk_A DNA-directed RNA polyme 96.4 0.0034 1.4E-07 38.5 4.6 45 107-153 61-105 (190)
57 3bg3_A Pyruvate carboxylase, m 96.4 0.0021 8.9E-08 39.7 3.4 33 134-166 650-682 (718)
58 3hbl_A Pyruvate carboxylase; T 96.4 0.0031 1.3E-07 38.7 4.2 32 135-166 1079-1110(1150)
59 3fpp_A Macrolide-specific effl 96.0 0.0044 1.9E-07 37.8 3.5 55 112-167 11-65 (341)
60 1f3z_A EIIA-GLC, glucose-speci 95.6 0.0074 3.1E-07 36.4 3.5 69 87-166 10-117 (161)
61 1bdo_A Acetyl-COA carboxylase; 95.6 0.0051 2.1E-07 37.4 2.4 35 87-128 46-80 (80)
62 2k7v_A Dihydrolipoyllysine-res 95.6 0.00039 1.7E-08 44.2 -3.3 38 86-130 36-73 (85)
63 1qjo_A Dihydrolipoamide acetyl 95.5 0.0084 3.5E-07 36.1 3.3 35 88-129 42-76 (80)
64 1k8m_A E2 component of branche 95.4 0.0089 3.8E-07 35.9 3.1 36 89-131 47-82 (93)
65 1iyu_A E2P, dihydrolipoamide a 95.3 0.015 6.5E-07 34.5 4.0 35 88-129 40-74 (79)
66 1ghj_A E2, E2, the dihydrolipo 94.6 0.018 7.6E-07 34.1 3.0 36 87-129 42-77 (79)
67 2f1m_A Acriflavine resistance 94.4 0.013 5.7E-07 34.8 1.9 33 135-167 24-56 (277)
68 1vf7_A Multidrug resistance pr 94.3 0.018 7.7E-07 34.0 2.4 31 90-127 44-74 (369)
69 1ax3_A Iiaglc, glucose permeas 94.1 0.018 7.8E-07 34.0 2.2 69 88-167 11-118 (162)
70 1y8o_B Dihydrolipoyllysine-res 93.8 0.037 1.5E-06 32.2 3.1 37 87-130 68-105 (128)
71 1gjx_A Pyruvate dehydrogenase; 93.5 0.037 1.6E-06 32.2 2.8 35 88-129 43-77 (81)
72 3crk_C Dihydrolipoyllysine-res 93.5 0.081 3.4E-06 30.1 4.5 35 88-129 47-82 (87)
73 2gpr_A Glucose-permease IIA co 93.4 0.062 2.6E-06 30.8 3.8 66 90-166 8-112 (154)
74 2dne_A Dihydrolipoyllysine-res 93.1 0.04 1.7E-06 32.0 2.4 36 87-129 48-84 (108)
75 1pmr_A Dihydrolipoyl succinylt 93.0 0.02 8.3E-07 33.8 0.8 36 87-129 43-78 (80)
76 2dnc_A Pyruvate dehydrogenase 92.6 0.048 2E-06 31.5 2.2 35 88-129 49-84 (98)
77 3d4r_A Domain of unknown funct 91.9 0.2 8.6E-06 27.7 4.8 39 110-148 114-153 (169)
78 3h9i_A Cation efflux system pr 91.4 0.028 1.2E-06 32.9 -0.1 33 134-166 122-155 (407)
79 2gu1_A Zinc peptidase; alpha/b 86.8 0.53 2.2E-05 25.1 3.7 20 109-128 283-302 (361)
80 3h5q_A PYNP, pyrimidine-nucleo 86.4 0.89 3.7E-05 23.8 4.6 22 110-131 383-404 (436)
81 3dva_I Dihydrolipoyllysine-res 85.8 0.12 5.2E-06 29.0 0.0 32 91-129 47-78 (428)
82 2dsj_A Pyrimidine-nucleoside ( 85.7 0.99 4.2E-05 23.5 4.6 20 110-129 372-391 (423)
83 1brw_A PYNP, protein (pyrimidi 85.3 1.7 7.1E-05 22.1 5.6 21 109-129 379-399 (433)
84 1uou_A Thymidine phosphorylase 84.9 1.9 8.1E-05 21.8 5.8 21 110-130 415-435 (474)
85 1ci3_M Protein (cytochrome F); 78.7 1.5 6.2E-05 22.5 3.3 17 146-162 212-228 (249)
86 2hsi_A Putative peptidase M23; 77.5 3.1 0.00013 20.5 4.7 62 90-167 191-252 (282)
87 3csq_A Morphogenesis protein 1 76.0 0.75 3.1E-05 24.3 1.2 21 109-129 250-270 (334)
88 2jxm_B Cytochrome F; copper, e 75.3 2 8.4E-05 21.7 3.2 17 146-162 212-228 (249)
89 1q90_A Apocytochrome F; membra 75.3 2.4 1E-04 21.2 3.6 61 82-162 161-229 (292)
90 2tpt_A Thymidine phosphorylase 74.5 2.1 8.8E-05 21.5 3.1 20 110-129 385-404 (440)
91 1qwy_A Peptidoglycan hydrolase 68.3 6.1 0.00026 18.7 4.8 20 145-164 237-256 (291)
92 3nyy_A Putative glycyl-glycine 65.0 1.7 7.2E-05 22.1 1.0 17 111-127 183-199 (252)
93 3it5_A Protease LASA; metallop 58.3 3.5 0.00015 20.2 1.6 20 108-127 83-102 (182)
94 1vh9_A P15, hypothetical prote 55.0 11 0.00045 17.3 7.0 111 5-129 6-118 (149)
95 3fo8_D Tail sheath protein GP1 47.4 8.3 0.00035 17.9 2.1 43 112-156 28-70 (283)
96 3paj_A Nicotinate-nucleotide p 42.6 13 0.00053 16.8 2.4 19 110-128 112-130 (320)
97 2qzb_A Uncharacterized protein 40.5 18 0.00075 15.9 3.0 42 112-154 45-89 (166)
98 3gqb_A V-type ATP synthase alp 38.1 20 0.00082 15.7 5.1 39 110-148 121-161 (578)
99 2f9h_A PTS system, IIA compone 36.3 14 0.00057 16.6 1.8 23 95-119 101-123 (129)
100 2jbm_A Nicotinate-nucleotide p 33.0 19 0.00079 15.7 2.1 18 111-128 76-93 (299)
101 1x1o_A Nicotinate-nucleotide p 32.6 23 0.00095 15.3 2.4 20 110-129 76-95 (286)
102 1hcz_A Cytochrome F; electron 32.0 24 0.001 15.1 2.6 16 147-162 213-228 (252)
103 3gnn_A Nicotinate-nucleotide p 31.3 24 0.001 15.1 2.4 20 110-129 90-109 (298)
104 2vv5_A MSCS, small-conductance 30.4 26 0.0011 14.9 3.2 36 112-147 130-165 (286)
105 1o4u_A Type II quinolic acid p 30.2 20 0.00085 15.6 1.8 19 110-128 75-93 (285)
106 2b7n_A Probable nicotinate-nuc 29.0 28 0.0012 14.7 3.0 18 111-128 63-80 (273)
107 1e2w_A Cytochrome F; electron 28.5 14 0.00061 16.5 0.8 30 132-162 192-229 (251)
108 3hur_A Alanine racemase; struc 26.9 18 0.00074 15.9 1.1 60 93-157 309-383 (395)
109 1qap_A Quinolinic acid phospho 26.9 30 0.0013 14.5 2.4 20 110-129 89-108 (296)
110 3e29_A Uncharacterized protein 26.8 30 0.0013 14.5 2.4 51 99-166 85-135 (144)
111 1vf5_C Cytochrome F; photosynt 26.1 14 0.00059 16.5 0.4 15 147-161 217-231 (289)
112 1qpo_A Quinolinate acid phosph 24.8 33 0.0014 14.3 3.9 19 111-129 76-94 (284)
113 1uwf_A FIMH protein, FIMH; bac 23.5 35 0.0015 14.1 2.7 35 94-133 101-135 (158)
114 3f5o_A Thioesterase superfamil 23.3 35 0.0015 14.1 3.6 47 92-144 82-128 (148)
115 2pim_A Phenylacetic acid degra 22.2 37 0.0016 14.0 2.3 31 98-129 89-119 (141)
116 3f1t_A Uncharacterized protein 22.2 37 0.0016 14.0 2.4 32 98-129 87-118 (148)
117 1yby_A Translation elongation 21.4 38 0.0016 13.9 1.9 14 109-122 193-206 (215)
118 2qwz_A Phenylacetic acid degra 20.7 40 0.0017 13.8 2.4 32 98-129 104-135 (159)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.95 E-value=3.8e-28 Score=190.01 Aligned_cols=78 Identities=49% Similarity=0.705 Sum_probs=76.0
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 662687046256774036764100012442010434899973772689998998199999848986836997299995
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~ 165 (171)
.++.|+|||+|+|||+|+|+.++||++||+|++||+||+||||||+++|.||++|+|.+|+|++|+.|++||+||+||
T Consensus 3 sg~~V~aPm~G~~~~~~~p~~~~~V~~Gd~V~~g~~l~~iEamK~~~~i~a~~~G~V~~i~v~~G~~V~~G~~L~~ie 80 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCCEEECCCCEEEEECCCCCCCCEECCCCEEECCCEEEEEEECCCHHHCCCCCCEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 899985898779981469999853268999966878999997620120659999899899868979989999999979
No 2
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=99.93 E-value=2e-25 Score=173.45 Aligned_cols=81 Identities=33% Similarity=0.503 Sum_probs=74.0
Q ss_pred CCCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 33345466268704625677403676410001244201043489997377268999899819999984898683699729
Q gi|254780267|r 82 PLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161 (171)
Q Consensus 82 ~~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L 161 (171)
+.....+...|.|||+|++| +..|++||+|++||+|+||||||||++|.||++|+|.+|+|+.|++|+.||+|
T Consensus 1070 ~~a~~~~~~~V~Ap~~GnVw-------kv~V~~Gd~V~~Gd~l~IlEAMKME~~V~Ap~~G~V~~I~v~~G~~V~aGq~L 1142 (1150)
T 3hbl_A 1070 PKADKSNPSHIGAQMPGSVT-------EVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLL 1142 (1150)
T ss_dssp CBCCTTCSSEEECSSSEEEE-------EECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEE
T ss_pred CCCCCCCCCEEECCCCEEEE-------EEEECCCCEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECCCCEECCCCEE
T ss_conf 76789999777068984789-------99808999979999899996520867153899918979981895987899979
Q ss_pred EEEEECCC
Q ss_conf 99953478
Q gi|254780267|r 162 LVLEKTGD 169 (171)
Q Consensus 162 ~~i~~~~~ 169 (171)
+.|||..|
T Consensus 1143 vvIe~~~~ 1150 (1150)
T 3hbl_A 1143 IEIEKATD 1150 (1150)
T ss_dssp EEEC----
T ss_pred EEEEECCC
T ss_conf 99984789
No 3
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=99.90 E-value=5.9e-24 Score=164.58 Aligned_cols=75 Identities=35% Similarity=0.469 Sum_probs=69.8
Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 33454662687046256774036764100012442010434899973772689998998199999848986836997299
Q gi|254780267|r 83 LLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALL 162 (171)
Q Consensus 83 ~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~ 162 (171)
...+.+...|.|||.|.|| +..|++||+|++||+|+||||||||++|.||++|+|.+|+|+.|++|+.||+|+
T Consensus 1089 ~a~p~~~~~V~AP~~GnVW-------KV~Vk~GD~VkaGq~L~ILEAMKMEi~V~AP~aG~V~~I~v~~Gd~V~aGq~Lv 1161 (1165)
T 2qf7_A 1089 KAEPGNAAHVGAPMPGVIS-------RVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLA 1161 (1165)
T ss_dssp BCCTTCTTEEECSSCEEEE-------EECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEE
T ss_pred CCCCCCCCEECCCCCEEEE-------EEEECCCCEECCCCEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCEECCCCEEE
T ss_conf 6899998877689996899-------999799999799998999966308672328998399799837959978999899
Q ss_pred EE
Q ss_conf 99
Q gi|254780267|r 163 VL 164 (171)
Q Consensus 163 ~i 164 (171)
+|
T Consensus 1162 VI 1163 (1165)
T 2qf7_A 1162 VY 1163 (1165)
T ss_dssp EC
T ss_pred EE
T ss_conf 94
No 4
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.88 E-value=6.2e-24 Score=164.45 Aligned_cols=76 Identities=29% Similarity=0.409 Sum_probs=69.4
Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 33454662687046256774036764100012442010434899973772689998998199999848986836997299
Q gi|254780267|r 83 LLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALL 162 (171)
Q Consensus 83 ~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~ 162 (171)
.....+...|.|||+|+++ +..|++||+|++||+||+|||||||++|.||++|+|.+|+|+.|+.|+.||+|+
T Consensus 643 ka~~~~~~~V~APmpG~V~-------~v~V~~Gd~V~~G~~l~vlEAMKMEt~I~Ap~~G~V~~I~V~~gd~V~~gdlL~ 715 (718)
T 3bg3_A 643 KALKDVKGQIGAPMPGKVI-------DIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLIL 715 (718)
T ss_dssp CCCCCSSSCEECSSCEEEE-------EECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEE
T ss_pred CCCCCCCCEECCCCCCEEE-------EEEECCCCEECCCCEEEEEEHHCCCCEECCCCCCEEEEEEECCCCEECCCCEEE
T ss_conf 8899998843389994379-------999699998799999999974108650338999189899978989888998899
Q ss_pred EEE
Q ss_conf 995
Q gi|254780267|r 163 VLE 165 (171)
Q Consensus 163 ~i~ 165 (171)
+||
T Consensus 716 ~ie 718 (718)
T 3bg3_A 716 EIE 718 (718)
T ss_dssp CBC
T ss_pred EEC
T ss_conf 969
No 5
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.87 E-value=1.7e-22 Score=155.67 Aligned_cols=74 Identities=36% Similarity=0.457 Sum_probs=68.1
Q ss_pred CCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 45466268704625677403676410001244201043489997377268999899819999984898683699729999
Q gi|254780267|r 85 SPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164 (171)
Q Consensus 85 ~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i 164 (171)
..++...|.|||+|++- +.+|++||+|++||+||+||||||+|+|.||.+|+|.+|+|+.|+.|+.||+|+++
T Consensus 608 ~~~~~g~l~APMPG~Vv-------~v~V~~Gd~V~aGq~L~VLEAMKME~~I~Ap~dG~V~~I~v~~Gd~V~~G~~L~~l 680 (681)
T 3n6r_A 608 PPDTSKMLLCPMPGLIV-------KVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680 (681)
T ss_dssp CCCCCSEEECCSCEEEE-------EECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCCCCEEECCCCCEEE-------EEECCCCCEECCCCEEEEEEEEECCCEEECCCCEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 88889989789997599-------99459949988989899999970355798389979836326988997999999996
Q ss_pred E
Q ss_conf 5
Q gi|254780267|r 165 E 165 (171)
Q Consensus 165 ~ 165 (171)
|
T Consensus 681 E 681 (681)
T 3n6r_A 681 E 681 (681)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 6
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.83 E-value=1e-20 Score=144.96 Aligned_cols=72 Identities=35% Similarity=0.565 Sum_probs=67.8
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 5466268704625677403676410001244201043489997377268999899819999984898683699729999
Q gi|254780267|r 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164 (171)
Q Consensus 86 ~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i 164 (171)
..+...|+|||+|+|| +.||++||+|++||+||+||||||+++|+||++|+|.+|++++|+.|.+||+||+|
T Consensus 5 ~~~~~~i~ap~~G~i~-------~~~V~~Gd~V~~Gq~l~~iEamK~~~~v~ap~~G~I~~i~v~~G~~V~~G~~L~~I 76 (77)
T 1dcz_A 5 KAGEGEIPAPLAGTVS-------KILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp CCCSSEEEBSSSCEEE-------EECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred CCCCCEEECCCCEEEE-------EEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 7889969899995999-------99838989986999899999435117997799979989981896997999999994
No 7
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=143.92 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=70.4
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 66268704625677403676410001244201043489997377268999899819999984898683699729999534
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
....++|||+|+++ +.||++||+|++||+||+||+|||+++|.||++|+|.+|+++.|+.|..||+|++|++.
T Consensus 13 ~~~~~~aPm~G~i~-------~~~v~~Gd~V~~g~~l~~vEt~K~~~~i~a~~~G~V~~i~v~~Gd~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 13 TQGGPLAPMTGTIE-------KVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp CCSSCBCSSSEEEE-------EECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred CCCCEECCCCEEEE-------EEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 78923388996999-------99828989986899899997376237998475780879972898996899989999638
Q ss_pred CCC
Q ss_conf 788
Q gi|254780267|r 168 GDN 170 (171)
Q Consensus 168 ~~~ 170 (171)
.+.
T Consensus 86 ~~~ 88 (99)
T 2ejm_A 86 ESD 88 (99)
T ss_dssp CSC
T ss_pred CCC
T ss_conf 877
No 8
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.79 E-value=1.9e-19 Score=137.24 Aligned_cols=70 Identities=40% Similarity=0.604 Sum_probs=66.8
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 66268704625677403676410001244201043489997377268999899819999984898683699729999
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i 164 (171)
+.+.|.|||+|+++ +.||++||+|++||+||.||+|||+++|+||.+|+|.++++++|+.|++||+|++|
T Consensus 4 ~~~~v~ap~~G~v~-------~~~v~~Gd~V~~g~~l~~iE~~K~~~~i~ap~~G~I~~i~v~~G~~V~~G~~L~~I 73 (74)
T 2d5d_A 4 SENVVSAPMPGKVL-------RVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73 (74)
T ss_dssp -CCEEECSSCEEEE-------EECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCEEECCCCCEEE-------EEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 49999799997999-------99948999993898899999356126998799989989994895998999999993
No 9
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=99.75 E-value=1.2e-19 Score=138.40 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=65.9
Q ss_pred CCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 62687046256774036764100012442010434899973772689998998199999848986836997299995
Q gi|254780267|r 89 YHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165 (171)
Q Consensus 89 ~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~ 165 (171)
...|+|||+|+++ ..+|++||+|++||+||.||+|||+++|.||++|+|.+|++++||.|.+||+|++||
T Consensus 25 ~~~i~aP~~G~V~-------~i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~Gd~V~~G~~L~~Ie 94 (94)
T 2jku_A 25 SSVLRSPMPGVVV-------AVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCSSSCEEE-------EECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCEEECCCCCEEE-------EEECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 8989899996898-------998189999958987999980365389993889999899868979979999999979
No 10
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.75 E-value=1.9e-18 Score=131.16 Aligned_cols=71 Identities=37% Similarity=0.529 Sum_probs=67.7
Q ss_pred EEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 687046256774036764100012442010434899973772689998998199999848986836997299995347
Q gi|254780267|r 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168 (171)
Q Consensus 91 ~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~ 168 (171)
+|+|||+|+++ +.||++||.|++||+||.||+|||+++|.||++|+|.++++++|+.|.+||+|+.|+++.
T Consensus 1 tv~~~m~G~i~-------~~~v~~Gd~V~~g~~l~~ie~~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~s 71 (72)
T 1z6h_A 1 TVSIQMAGNLW-------KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNST 71 (72)
T ss_dssp CEECCSSEEEE-------EECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGGC
T ss_pred CEECCCCEEEE-------EEECCCCCEECCCCEEEEEECCCCCCCEECCCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 98053878999-------999279899907989999981765530588979899999778979989999999994798
No 11
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=128.17 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=67.1
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 66268704625677403676410001244201043489997377268999899819999984898683699729999534
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
+...|+|||.|+++ +.||+.||+|++||+||.||+|||+++|+||.+|+|..+ ++.|+.|..|++|++|+++
T Consensus 4 dp~~v~ap~~G~i~-------~~~V~~Gd~V~~G~~l~~iEa~K~~~~I~ap~sG~I~~~-v~~Gd~V~~G~~l~~ie~~ 75 (84)
T 2kcc_A 4 DPTVLRSPSAGKLT-------QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELD 75 (84)
T ss_dssp CTTEECCSSSCCEE-------EESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEEC-SCTTCCCCTTCCCEEEECS
T ss_pred CCCEEECCCCEEEE-------EEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEE-ECCCCEECCCCEEEEEECC
T ss_conf 99879889885999-------999579899917986999984744789986889899999-8898999999999999458
Q ss_pred C
Q ss_conf 7
Q gi|254780267|r 168 G 168 (171)
Q Consensus 168 ~ 168 (171)
+
T Consensus 76 d 76 (84)
T 2kcc_A 76 D 76 (84)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 12
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=120.53 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 46626870462567740367641000124420104348999737726899989981999998489868369972999953
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
.+...|.|||.|+++ +.+|+.||+|++||+||+||+|||+++|.||.+|+| +++++.|+.|..|++|+.|++
T Consensus 15 ~dp~~v~ap~~G~i~-------~~~V~~Gd~V~~Gd~l~~iEt~K~~~~V~A~~~G~i-~~~v~~G~~V~~G~~l~~ie~ 86 (100)
T 2dn8_A 15 NDPTVLRSPSAGKLT-------QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp CCTTEEECSSCEEEE-------EESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEE-EECSCTTCEECSSCEEEEECC
T ss_pred CCCCEEECCCCEEEE-------EEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEE-EEEECCCCEECCCCEEEEEEC
T ss_conf 899888789986999-------999379899858997999982732689977889899-999789899999999999966
Q ss_pred CC
Q ss_conf 47
Q gi|254780267|r 167 TG 168 (171)
Q Consensus 167 ~~ 168 (171)
++
T Consensus 87 dd 88 (100)
T 2dn8_A 87 DD 88 (100)
T ss_dssp SC
T ss_pred CC
T ss_conf 88
No 13
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.68 E-value=1.4e-16 Score=119.82 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=66.3
Q ss_pred EEEECC---CEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 687046---25677403676410001244201043489997377268999899819999984898683699729999534
Q gi|254780267|r 91 TVTSPM---VGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 91 ~I~SPm---vGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
.|+.|- .|++. +-||++||.|++||+||.||+|||+++|.|+++|+|.+++++.|+.|+.||+|+.|+++
T Consensus 3 ~i~~P~~g~~g~i~-------~~~v~~Gd~V~~G~~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~ 75 (79)
T 1iyu_A 3 IIRVPDIGGDGEVI-------ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEECCCCSSEEEEE-------EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEECCCCCCCEEEE-------EEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 79899898968999-------99827979990899899999567158998798999999935896998999999999478
Q ss_pred CCCC
Q ss_conf 7889
Q gi|254780267|r 168 GDNK 171 (171)
Q Consensus 168 ~~~~ 171 (171)
+..+
T Consensus 76 ~~a~ 79 (79)
T 1iyu_A 76 AGAR 79 (79)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 6789
No 14
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.63 E-value=7.3e-17 Score=121.51 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=67.6
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 26870462567740367641000124420104348999737726899989981999998489868369972999953478
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~ 169 (171)
..|++|+.|.+. +.||++||+|++||+||.||+|||.++|.|+++|+|.+|+++.|+.|..||+|+.|+.++.
T Consensus 3 ~~v~~P~~~~I~-------~~~v~~Gd~V~~gd~l~~iE~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~~l~~ie~~~~ 75 (85)
T 2k7v_A 3 KEVNVPDIVEVT-------EVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 75 (85)
T ss_dssp SCCCCCSCCCCC-------SCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCSS
T ss_pred CEEECCCCEEEE-------EEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCC
T ss_conf 379799978898-------9992799999179989999818837998637898998999689899799999999974887
No 15
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.49 E-value=1.9e-14 Score=106.81 Aligned_cols=61 Identities=28% Similarity=0.512 Sum_probs=58.4
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 1000124420104348999737726899989981999998489868369972999953478
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~ 169 (171)
+-||++||.|++||+||.||+|||.++|+||++|+|.+|+++.|+.|..||+|+.|+.+++
T Consensus 19 ~~~v~~Gd~V~~g~~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~v~~G~~l~~ie~~g~ 79 (80)
T 1qjo_A 19 EVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79 (80)
T ss_dssp ECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCCC
T ss_pred EEEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCC
T ss_conf 9991797999899989999907545199846527999999589899589999999964658
No 16
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.49 E-value=2.7e-15 Score=111.96 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=58.8
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 1000124420104348999737726899989981999998489868369972999953478
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~ 169 (171)
+.||++||+|++||+||.||+|||.++|.||.+|+|.+++++.|+.|..||+|+.|+.+++
T Consensus 20 ~~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~g~ 80 (81)
T 1gjx_A 20 AVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT 80 (81)
T ss_dssp EECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred EEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCC
T ss_conf 9982897999089989999938837999805547999998289899889999999945648
No 17
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.49 E-value=3.4e-14 Score=105.31 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10001244201043489997377268999899819999984898683699729999534788
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDN 170 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~~ 170 (171)
+-+|++||.|++||+||.||+||+.++|.||.+|+|.+++++.|+.|..||+|++|+.++..
T Consensus 23 ~w~v~~Gd~V~~Gd~l~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~~L~~Ie~e~~~ 84 (93)
T 1k8m_A 23 EWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALK 84 (93)
T ss_dssp EECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCCT
T ss_pred EEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCCC
T ss_conf 99908979998899899998377289788388999999953899998899999999777875
No 18
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.43 E-value=2.7e-13 Score=99.80 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=57.3
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 100012442010434899973772689998998199999848986836997299995347
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~ 168 (171)
+-++++||+|++||+||.||+|||.++|.||++|+|.+|+++.|+.|..||+|..|+..|
T Consensus 20 ~w~v~~Gd~V~~gd~l~~vEtdK~~~ei~ap~~G~v~~i~v~~G~~v~~G~~l~~i~~~G 79 (79)
T 1ghj_A 20 TWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG 79 (79)
T ss_dssp CCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCCC
T ss_pred EEECCCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 999279899908998999995865899983468999999848999978999999994799
No 19
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=93.92 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=57.5
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCCCEEEEEEECCCC
Q ss_conf 100012442010434899973772689998998199999848986-83699729999534788
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ-SVEYGDALLVLEKTGDN 170 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~-~V~~gq~L~~i~~~~~~ 170 (171)
+-+|++||+|++||+||.||+||+.++|.||.+|+|.+|++..|+ .|..|++|..|...+++
T Consensus 26 ~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~~i~~i~~~~e~ 88 (98)
T 2dnc_A 26 KWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGED 88 (98)
T ss_dssp EESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTTSC
T ss_pred EEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCCCC
T ss_conf 999089999938998999985838999974899899999976898297799989999038775
No 20
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.26 E-value=9.8e-12 Score=90.35 Aligned_cols=61 Identities=23% Similarity=0.228 Sum_probs=56.3
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCCCEEEEEEECCC
Q ss_conf 100012442010434899973772689998998199999848986-8369972999953478
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ-SVEYGDALLVLEKTGD 169 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~-~V~~gq~L~~i~~~~~ 169 (171)
.-++++||.|++||+||.||.+|+..+|.|+.+|+|.+|+|+.|+ .|..|++|..|.+...
T Consensus 46 ~W~vk~GD~V~~gd~L~evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~~Ia~I~~~~~ 107 (128)
T 1y8o_B 46 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEA 107 (128)
T ss_dssp EECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSGG
T ss_pred EEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCCC
T ss_conf 99957999980899799998286579884267879999996679838818998999934776
No 21
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.24 E-value=1.4e-11 Score=89.40 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=57.4
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCCCEEEEEEECCCC
Q ss_conf 100012442010434899973772689998998199999848986-83699729999534788
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ-SVEYGDALLVLEKTGDN 170 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~-~V~~gq~L~~i~~~~~~ 170 (171)
+-++++||+|++||+||.||++|+..+|+|+.+|++.+++++.|+ .|..|++|..|..+++.
T Consensus 24 ~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~ed 86 (87)
T 3crk_C 24 RWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD 86 (87)
T ss_dssp EECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSSTT
T ss_pred EEECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCCCC
T ss_conf 986399999978997999990778886871899999999977898297599989999566786
No 22
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.15 E-value=3.2e-11 Score=87.23 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCCCEEEEEEECC
Q ss_conf 100012442010434899973772689998998199999848986-836997299995347
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ-SVEYGDALLVLEKTG 168 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~-~V~~gq~L~~i~~~~ 168 (171)
.-+|++||.|++||+||.||.+|+..+|.|+.+|+|.+|+++.|+ .|..|++|..|....
T Consensus 26 ~W~v~~Gd~V~~gd~l~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~~ia~i~~~~ 86 (108)
T 2dne_A 26 RWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp ECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred EEEECCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf 9993699998079989999838576898607896999999667984876999899992486
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.14 E-value=1.5e-12 Score=95.38 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=55.7
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 1000124420104348999737726899989981999998489868369972999953
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
+-++++||+|++||+||.||+||+.++|.||.+|+|.+|+++.|+.|..||+|..|++
T Consensus 21 ~w~v~~Gd~V~~gd~l~eiEtdK~~~ei~a~~~G~l~~i~v~~G~~v~vG~~l~~i~e 78 (80)
T 1pmr_A 21 TWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp BCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 9990798998799989999938658998703689999998689999879999999979
No 24
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=98.94 E-value=7.2e-11 Score=85.08 Aligned_cols=61 Identities=31% Similarity=0.461 Sum_probs=57.0
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 1000124420104348999737726899989981999998489868369972999953478
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~~~ 169 (171)
+-++++||.|++||+||.||..|.-.+|+|+++|+|.+|+++.|+.|.-|++|..|+..++
T Consensus 21 ~W~~~~Gd~V~~gd~l~evETDKa~~ev~s~~~G~l~~i~~~~G~~v~vG~~i~~i~~~~~ 81 (428)
T 3dva_I 21 KWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEECCCCEECCCCEEEEEECCCEEEEECCCCCEEEEEEEECCCCEEECCCEEEEEECCCC
T ss_conf 9992899985899919999848760797468997999998489999807998999955776
No 25
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=98.90 E-value=1.2e-10 Score=83.69 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=55.1
Q ss_pred CCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCCCEEEEEEECCC
Q ss_conf 100012442010434899973772689998998199999848986-8369972999953478
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ-SVEYGDALLVLEKTGD 169 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~-~V~~gq~L~~i~~~~~ 169 (171)
.-+|++||.|++||+||.||..|.-.+|.|+++|+|.+||++.|+ .|.-|++|..|..+++
T Consensus 22 ~Wlvk~GD~V~~gd~L~evETDKa~~Ev~ap~~G~l~~i~v~eG~~~v~vg~~i~~i~~~~~ 83 (229)
T 1zy8_K 22 KWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 83 (229)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEECCCCEECCCCEEEEEEECCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 99818999977999799999286689998726717988776237521245641023202223
No 26
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.42 E-value=2.8e-07 Score=63.28 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=58.8
Q ss_pred EEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC------------------------------CCEEEEEECCC
Q ss_conf 687046256774036764100012442010434899973------------------------------77268999899
Q gi|254780267|r 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA------------------------------MKTMNHIVAPC 140 (171)
Q Consensus 91 ~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA------------------------------MKm~n~I~a~~ 140 (171)
.|++...|++ ...+|+.||.|++||+|+.|+. +. ...|+||+
T Consensus 3 ~i~~~v~G~V-------~~i~v~eG~~V~kGq~L~~ld~~~a~~~~~r~~~l~~~~~vS~~~~d~a~~~L~-~~~I~AP~ 74 (116)
T 2k32_A 3 IIKPQVSGVI-------VNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLD-HTEIKAPF 74 (116)
T ss_dssp EECCSSCEEE-------EEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTT-EEEEECSS
T ss_pred EEECCCCEEE-------EEEECCCCCEECCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCEEECCC
T ss_conf 8967578899-------999888989988998999876211133554554420023001232699997551-78998898
Q ss_pred CCEEEEEECCCCCCCCCCC-EEEEEEECC
Q ss_conf 8199999848986836997-299995347
Q gi|254780267|r 141 SGKVQDINVKDGQSVEYGD-ALLVLEKTG 168 (171)
Q Consensus 141 ~G~I~~i~v~~G~~V~~gq-~L~~i~~~~ 168 (171)
+|+|.++.++.|+.|..|+ +|+.|-...
T Consensus 75 ~G~V~~~~~~~G~~V~~g~~~l~~I~~~d 103 (116)
T 2k32_A 75 DGTIGDALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp SEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred CEEEEEEECCCCCEECCCCCEEEEEECCC
T ss_conf 87999898799998889995489997798
No 27
>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} PDB: 3lwu_A*
Probab=97.94 E-value=4.9e-05 Score=49.69 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC------CEEEEEECCCCCEEEEEECCCCCCCCCCCE
Q ss_conf 46626870462567740367641000124420104348999737------726899989981999998489868369972
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM------KTMNHIVAPCSGKVQDINVKDGQSVEYGDA 160 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM------Km~n~I~a~~~G~I~~i~v~~G~~V~~gq~ 160 (171)
.+...+.||.-|.|+ +.++.||.|++||+|+.|--. -...+|.||.+|+| +....+-.|..|++
T Consensus 288 ~~~~~v~a~~~Gl~~--------~~~~~G~~V~~G~~lg~i~d~~~~~~g~~~~~v~ap~dGiv--~~~~~~~~V~~Gd~ 357 (368)
T 3fmc_A 288 KNYRKFHAPKAGMVE--------YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVP--ILHFASASVHQGTE 357 (368)
T ss_dssp GGEEEEECSSCEEEE--------ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEE--EEECSSSEECTTCE
T ss_pred CCCEEEECCCCEEEE--------ECCCCCCEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEE--EECCCCCCCCCCCE
T ss_conf 688799589985888--------77999799789988999977876777874089995899889--98058873079999
Q ss_pred EEEEE
Q ss_conf 99995
Q gi|254780267|r 161 LLVLE 165 (171)
Q Consensus 161 L~~i~ 165 (171)
|+.|=
T Consensus 358 l~~i~ 362 (368)
T 3fmc_A 358 LYKVM 362 (368)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99886
No 28
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=97.90 E-value=1.1e-05 Score=53.70 Aligned_cols=72 Identities=18% Similarity=0.345 Sum_probs=57.0
Q ss_pred CCEEEECCCEEEEEECCCCCCCE-ECCCCCEEECCEEEEEECC-------------------------------------
Q ss_conf 62687046256774036764100-0124420104348999737-------------------------------------
Q gi|254780267|r 89 YHTVTSPMVGTAYLASSPGSDPF-VNKGNLVVEGQTLLIIEAM------------------------------------- 130 (171)
Q Consensus 89 ~~~I~SPmvGtfy~~psP~~~~~-V~vGd~Vk~G~~l~iiEAM------------------------------------- 130 (171)
...|.|+..|.+ ...+ +.+||+|++||+|+-|++=
T Consensus 121 ~~~v~a~~~G~I-------~~l~v~~~Gd~VkkGq~L~~lds~~l~~aq~e~~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (407)
T 3h9i_A 121 YAIVQARAAGFI-------DKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 193 (407)
T ss_dssp CEEEEEESCCCC-------BCCCSCCSSCEESTTCCCEEEECHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTTCCHH
T ss_pred EEEEECCCCEEE-------EEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 899965667799-------9995068999885898899987867999999999999999999999999999998722366
Q ss_pred -----------CEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf -----------7268999899819999984898683699729999534
Q gi|254780267|r 131 -----------KTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 131 -----------Km~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
.-...|.||++|+|.++.+..|+.|..|++||.|-..
T Consensus 194 ~~~~~~~~~~~~~~~~i~AP~~G~V~~~~v~~G~~v~~g~~l~~i~d~ 241 (407)
T 3h9i_A 194 DIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (407)
T ss_dssp HHHHHHHHCCCCCEEEECCSSSEEEECCCCCSSCCCCTEEEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCCCCCCCCCCCEEECC
T ss_conf 788899998874283896783550147754136525899741201001
No 29
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=97.85 E-value=1.7e-05 Score=52.49 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=58.5
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCE-----------------------------------
Q ss_conf 662687046256774036764100012442010434899973772-----------------------------------
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKT----------------------------------- 132 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm----------------------------------- 132 (171)
....|.|+..|++- ..+|+.||.|++||+|+.|+..-+
T Consensus 56 ~~~~l~~~v~G~V~-------~i~v~~G~~V~kGq~L~~id~~el~~a~~~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~ 128 (359)
T 3lnn_A 56 KLVKVLPPLAGRIV-------SLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK 128 (359)
T ss_dssp SEEEECCSSCEEEE-------ECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred EEEEEECCCCEEEE-------EEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79999677778999-------99989919988999899998599999999999999878877789999987642332032
Q ss_pred -----------------------------------------EEEEECCCCCEEEEEECCCCCCCCCCCE-EEEEEE
Q ss_conf -----------------------------------------6899989981999998489868369972-999953
Q gi|254780267|r 133 -----------------------------------------MNHIVAPCSGKVQDINVKDGQSVEYGDA-LLVLEK 166 (171)
Q Consensus 133 -----------------------------------------~n~I~a~~~G~I~~i~v~~G~~V~~gq~-L~~i~~ 166 (171)
...|.||++|+|..+.+..|+.|..|++ |+.+-.
T Consensus 129 ~~~~~~~~~~~~a~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~g~~v~~~~~~l~~i~d 204 (359)
T 3lnn_A 129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD 204 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCEEEECCCEEEEEEC
T ss_conf 3578887655545667778899998777654022343024349998565775214200138357631420368741
No 30
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.77 E-value=0.00016 Score=46.48 Aligned_cols=72 Identities=22% Similarity=0.108 Sum_probs=58.0
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC----CEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 46626870462567740367641000124420104348999737----72689998998199999848986836997299
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM----KTMNHIVAPCSGKVQDINVKDGQSVEYGDALL 162 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM----Km~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~ 162 (171)
+....+.||--|.|+ +.++.||.|++||+|+.|-.. ....++.||.+|.|...... -.|..|+.|+
T Consensus 265 ~~~~~v~A~~~Gl~~--------~~v~lG~~V~kGq~ig~I~d~d~~g~~~~~v~Ap~dGivl~~~~~--~~V~~Gd~la 334 (354)
T 3cdx_A 265 EADAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGP--GRVTRGDAVA 334 (354)
T ss_dssp CGGGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECS--SEECTTCEEE
T ss_pred CCCCEEECCCCEEEE--------ECCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCC--CCCCCCCEEE
T ss_conf 475222279987999--------807879994899999999567888970499987998599972588--8306899699
Q ss_pred EEEECC
Q ss_conf 995347
Q gi|254780267|r 163 VLEKTG 168 (171)
Q Consensus 163 ~i~~~~ 168 (171)
.|=.+-
T Consensus 335 ~Ia~d~ 340 (354)
T 3cdx_A 335 VVMEDY 340 (354)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 996488
No 31
>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099}
Probab=97.56 E-value=0.00027 Score=45.21 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC----CEEEEEECCCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 46626870462567740367641000124420104348999737----72689998998199999848986836997299
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM----KTMNHIVAPCSGKVQDINVKDGQSVEYGDALL 162 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM----Km~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~ 162 (171)
.....+.||.-|.|. +.++.||.|++||+|+.|--+ ...-+|.||.+|.|... ...-.|..|+.|+
T Consensus 255 ~~~~~l~a~~~G~~~--------~~~~~G~~V~kGq~lg~i~~~~~~g~~~~~i~Ap~dG~i~~~--~~~~~V~~G~~l~ 324 (332)
T 2qj8_A 255 TSSDQLKSPSPGIFE--------PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVA 324 (332)
T ss_dssp CGGGEEECSSSEEEE--------ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEE
T ss_pred CCCEEEECCCCCEEE--------ECCCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEE--CCCCCCCCCCEEE
T ss_conf 552662279887798--------758989998899999998177656875389993899999980--3787157999899
Q ss_pred EEEE
Q ss_conf 9953
Q gi|254780267|r 163 VLEK 166 (171)
Q Consensus 163 ~i~~ 166 (171)
.|-.
T Consensus 325 ~ia~ 328 (332)
T 2qj8_A 325 ILAR 328 (332)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9989
No 32
>1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=97.38 E-value=0.00017 Score=46.41 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=45.3
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCC---CCCC-EEEEEEECCC
Q ss_conf 012442010434899973772689998998199999848---98683---6997-2999953478
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSV---EYGD-ALLVLEKTGD 169 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V---~~gq-~L~~i~~~~~ 169 (171)
-.+|++|++|+.++.||+-|.-.+|.||++|+|.+++-+ +-+.+ -||+ =||+|++++.
T Consensus 53 p~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~liN~dPy~~gWl~~ik~~d~ 117 (136)
T 1zko_A 53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDE 117 (136)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEHHHHHCCHHHHCCCCCCCCEEEEEEECCH
T ss_conf 99998865597689999866157775035459998656443197875389889978999998987
No 33
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.35 E-value=0.00031 Score=44.80 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=39.4
Q ss_pred CCEECCCCCEEECCEEEEEEC-------CCEEEEEECCCCCEEEEEECCCCCCCCCCC-EEEEEEE
Q ss_conf 100012442010434899973-------772689998998199999848986836997-2999953
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEA-------MKTMNHIVAPCSGKVQDINVKDGQSVEYGD-ALLVLEK 166 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEA-------MKm~n~I~a~~~G~I~~i~v~~G~~V~~gq-~L~~i~~ 166 (171)
+.+|+.||+|++||.|+-+.- --+..+|.-........++...| .|..|+ +||+|++
T Consensus 97 ~~~vk~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvv~n~~~~~~~~~~~~-~v~~g~~~l~~i~k 161 (161)
T 1f3z_A 97 KRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTVGETPVIRIKK 161 (161)
T ss_dssp EECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECCS-EECTTTSEEEEEEC
T ss_pred EEEECCCCEEECCCEEEEECHHHHHHCCCCCCEEEEEECCHHCCEEEECCC-CEEECCCEEEEEEC
T ss_conf 899768999938989899879999861999825999976566031462478-58629927999989
No 34
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.33 E-value=0.00021 Score=45.88 Aligned_cols=58 Identities=33% Similarity=0.462 Sum_probs=46.2
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCC---CCCC-EEEEEEECCC
Q ss_conf 012442010434899973772689998998199999848---98683---6997-2999953478
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSV---EYGD-ALLVLEKTGD 169 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V---~~gq-~L~~i~~~~~ 169 (171)
-.+|++|++||.++.||+-|.-.+|.||++|+|.+++-+ +-+.+ -|++ =|++|+++..
T Consensus 67 p~~g~~v~~gd~~~~vEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~llN~dpy~~gWl~~vk~~~~ 131 (155)
T 3hgb_A 67 PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSS 131 (155)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCTT
T ss_pred CCCCCEEECCCEEEEEEECCEEECCCCCCCCEEEEECHHHHHCHHHHCCCCCCCCEEEEEEECCC
T ss_conf 57996760797689999834020102783635788525454396865289888963899998883
No 35
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A
Probab=97.31 E-value=0.00023 Score=45.64 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=45.0
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCC---CCCC-EEEEEEECC
Q ss_conf 012442010434899973772689998998199999848---98683---6997-299995347
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSV---EYGD-ALLVLEKTG 168 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V---~~gq-~L~~i~~~~ 168 (171)
-.+|+.|++|+.++.||+.|.-.+|.||++|+|.+++-. +-+.+ -||. =||+|++++
T Consensus 40 p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~~N~~l~~~P~lin~dpy~~gWl~~ik~~d 103 (125)
T 3klr_A 40 PEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSN 103 (125)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESC
T ss_pred CCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEHHHHHHCHHHHCCCCCCCCEEEEEEECC
T ss_conf 9999898548607999973236675103442566750435429586538988896799999899
No 36
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.31 E-value=0.00018 Score=46.24 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=34.5
Q ss_pred CCEECCCCCEEECCEEEEEEC-------CCEEEEEECCCCCEEEEEE-CCCCCCCCCCCEEEEEEE
Q ss_conf 100012442010434899973-------7726899989981999998-489868369972999953
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEA-------MKTMNHIVAPCSGKVQDIN-VKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEA-------MKm~n~I~a~~~G~I~~i~-v~~G~~V~~gq~L~~i~~ 166 (171)
..+|+.||+|++||.|+-+.- .-+...|.-.-......+. ...|+.+.-+++|+.|++
T Consensus 97 ~~~V~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~~~v~~g~~~i~~v~k 162 (162)
T 1ax3_A 97 TSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIEK 162 (162)
T ss_dssp EESCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGGGTCEEEECCCSEECTTCSSSEEEEC
T ss_pred EEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCEEECCCEEEEEEC
T ss_conf 899826999989999999759999862999842999970621545888247878849965899979
No 37
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.30 E-value=0.00023 Score=45.53 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=45.3
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCC---CCCC---CCC-EEEEEEECC
Q ss_conf 01244201043489997377268999899819999984898---6836---997-299995347
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDG---QSVE---YGD-ALLVLEKTG 168 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G---~~V~---~gq-~L~~i~~~~ 168 (171)
-.+|+.|++|+.++.||+-|.-.+|.||++|+|.+++-+-. +.+. ||+ =|++|++++
T Consensus 45 p~~g~~v~~g~~~~~vEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d 108 (128)
T 3a7l_A 45 PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred CCCCCEECCCCCEEEEEECCEEECCCCCCCCEEEEECHHHHHCHHHHCCCCCCCCEEEEEEECC
T ss_conf 9998771279703555403503111257562588752545529586428988896799999898
No 38
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.28 E-value=0.00026 Score=45.29 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=45.5
Q ss_pred EECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCCC---CCCC-EEEEEEECC
Q ss_conf 00124420104348999737726899989981999998489---8683---6997-299995347
Q gi|254780267|r 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD---GQSV---EYGD-ALLVLEKTG 168 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~---G~~V---~~gq-~L~~i~~~~ 168 (171)
|..+|++|++||.++.||+-|.-.+|.||++|+|.+++-.- -+.+ -||+ =||+|++++
T Consensus 61 lp~~g~~v~~g~~~~~IEs~K~v~~i~sPvsG~VvevN~~l~~~P~llN~dPy~~gWlv~i~~~d 125 (143)
T 3mxu_A 61 LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQD 125 (143)
T ss_dssp CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSC
T ss_pred ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEECHHHHHCHHHHCCCCCCCCEEEEEEECC
T ss_conf 45887678359708999844558864303546999860444419586538989992599999898
No 39
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.27 E-value=0.00029 Score=44.99 Aligned_cols=58 Identities=26% Similarity=0.548 Sum_probs=45.4
Q ss_pred EECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCC---CCCC-EEEEEEECC
Q ss_conf 0012442010434899973772689998998199999848---98683---6997-299995347
Q gi|254780267|r 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSV---EYGD-ALLVLEKTG 168 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V---~~gq-~L~~i~~~~ 168 (171)
|.++|++|++|+.++.||+-|.-.+|.||++|+|.+++-+ +=+.+ -||+ =|++|++++
T Consensus 43 lp~~g~~v~~g~~~~~vEs~k~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~vk~~d 107 (128)
T 1onl_A 43 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred CCCCCCHHCCCCEEEEEEECCEEEECCCCCCCEEEEEHHHHHHCHHHHCCCCCCCCEEEEEEECC
T ss_conf 79998521079617999975405301389772589870555429887638988897899999898
No 40
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.24 E-value=0.00019 Score=46.09 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=32.0
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 89997377268999899819999984898683699729999534
Q gi|254780267|r 124 LLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 124 l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
-+.|++-.. ..|.++++|+|.+++|++|+.|..||+|++|+..
T Consensus 35 ~G~v~~~~~-~~v~~~v~G~V~~v~V~~Gd~VkkGd~L~~ld~~ 77 (369)
T 1vf7_A 35 PGRTNAFRI-AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp EEECEESCE-EEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEEEEEE-EEEEEECCEEEEEEECCCCCEECCCCEEEEECCH
T ss_conf 999997089-9999545789999988995998899989998868
No 41
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.19 E-value=0.0004 Score=44.12 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=18.6
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEE
Q ss_conf 268704625677403676410001244201043489997
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiE 128 (171)
..|.||..|++ ...+|+.||.|++||+|+-|+
T Consensus 32 ~~v~a~~~G~V-------~~v~v~~G~~V~~G~~L~~id 63 (341)
T 3fpp_A 32 VDVGAQVSGQL-------KTLSVAIGDKVKKDQLLGVID 63 (341)
T ss_dssp EECCCSSCEEE-------EEECCCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEE-------EEEECCCCCEECCCCEEEEEC
T ss_conf 99984477899-------999989919988999899988
No 42
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=97.16 E-value=0.0003 Score=44.93 Aligned_cols=35 Identities=43% Similarity=0.591 Sum_probs=25.8
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 68999899819999984898683699729999534
Q gi|254780267|r 133 MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 133 ~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
+|.|.||..|+|.+++|+.|+.|+.||+|+.||-.
T Consensus 5 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE~~ 39 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CCEEECCCCCEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 99997999979999994899999389889999935
No 43
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=97.14 E-value=0.00028 Score=45.11 Aligned_cols=34 Identities=44% Similarity=0.663 Sum_probs=24.6
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 6899989981999998489868369972999953
Q gi|254780267|r 133 MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 133 ~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
++.|.||..|+|.+++|+.||.|+.||+|+.||-
T Consensus 8 ~~~i~ap~~G~i~~~~V~~Gd~V~~Gq~l~~iEa 41 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred CCEEECCCCEEEEEEECCCCCEECCCCEEEEEEE
T ss_conf 9969899995999998389899869998999994
No 44
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.11 E-value=0.00052 Score=43.44 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=44.5
Q ss_pred CCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCCC---CCCC-EEEEEEECC
Q ss_conf 12442010434899973772689998998199999848---98683---6997-299995347
Q gi|254780267|r 113 NKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK---DGQSV---EYGD-ALLVLEKTG 168 (171)
Q Consensus 113 ~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~---~G~~V---~~gq-~L~~i~~~~ 168 (171)
.+|++|++|+.+|.||+-|.-.+|.||++|+|.+++-+ +=+.+ -||. =||+|+++.
T Consensus 45 ~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d 107 (131)
T 1hpc_A 45 EPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp CTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred CCCCEEECCCEEEEEEECCCEEEEEECCCEEEEEECHHHHHCHHHHHCCCCCCCEEEEEEECC
T ss_conf 998775279728999984510013302434999851544419687608988896799999899
No 45
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.09 E-value=0.00043 Score=43.94 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=30.6
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 899989981999998489868369972999953
Q gi|254780267|r 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 134 n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
..|.||..|+|.+++|++|+.|+.||+|+++|-
T Consensus 613 g~l~APMPG~Vv~v~V~~Gd~V~aGq~L~VLEA 645 (681)
T 3n6r_A 613 KMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp SEEECCSCEEEEEECCCTTCEECTTCEEEEEEC
T ss_pred CEEECCCCCEEEEEECCCCCEECCCCEEEEEEE
T ss_conf 989789997599994599499889898999999
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00021 Score=45.82 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 62687046256774036764100012442010434899973
Q gi|254780267|r 89 YHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 89 ~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
...|.||.-|++. -+++.||.|..||+||+||.
T Consensus 54 ~~~V~A~~~G~i~--------~~v~~G~~V~~G~~l~~ie~ 86 (100)
T 2dn8_A 54 IMTLNVQERGRVK--------YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp EEEEECSSSEEEE--------ECSCTTCEECSSCEEEEECC
T ss_pred EEEEECCCCEEEE--------EEECCCCEECCCCEEEEEEC
T ss_conf 6899778898999--------99789899999999999966
No 47
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=96.89 E-value=0.0014 Score=40.92 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=32.3
Q ss_pred EEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 48999737-7268999899819999984898683699729999534
Q gi|254780267|r 123 TLLIIEAM-KTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 123 ~l~iiEAM-Km~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
.-+.+++- .-.-.|.|+++|+|.+|+|+.|+.|..||+|++|+.+
T Consensus 46 ~~G~v~~~p~~~~~l~~~v~G~V~~i~v~~G~~V~kGq~L~~id~~ 91 (359)
T 3lnn_A 46 LPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECHH
T ss_conf 9999997755799996777789999998991998899989999859
No 48
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=96.88 E-value=0.00034 Score=44.58 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=47.2
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCC--------------------------------------
Q ss_conf 268704625677403676410001244201043489997377--------------------------------------
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMK-------------------------------------- 131 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMK-------------------------------------- 131 (171)
..|.||..|++ ...+|+.||.|++||+|+.|+.=.
T Consensus 23 v~I~a~v~G~V-------~~i~v~~G~~VkkG~~L~~ld~~~~~~~l~~~~a~l~~a~~~l~~a~~~~~r~~~l~~~~~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGII-------LKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEE-------EEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEEECCEEE-------EEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99995457899-------99987993998899999998858999899999999999986555410046788776443653
Q ss_pred ---------------------------------EEEEEECCCCCEEEEEECCCCCCCCCCC--EEEEEEEC
Q ss_conf ---------------------------------2689998998199999848986836997--29999534
Q gi|254780267|r 132 ---------------------------------TMNHIVAPCSGKVQDINVKDGQSVEYGD--ALLVLEKT 167 (171)
Q Consensus 132 ---------------------------------m~n~I~a~~~G~I~~i~v~~G~~V~~gq--~L~~i~~~ 167 (171)
-...|.||++|.|..+.++.|+.+..|+ +|+.+...
T Consensus 96 ~~~~~~~a~~~~~~~~~~l~~a~a~l~~~~~~l~~~~i~ap~~g~v~~~~~~~g~~~~~~~~~~l~~i~~~ 166 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCEECCCCCEEEEEEECC
T ss_conf 21015777766776565799999998777652022499705341798875146977767886079999448
No 49
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=96.86 E-value=0.00079 Score=42.33 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=27.2
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECC-EEEEEECC
Q ss_conf 66268704625677403676410001244201043-48999737
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQ-TLLIIEAM 130 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~-~l~iiEAM 130 (171)
+...|+||+-|++ ....++.|+.|..|+ +|+.|..+
T Consensus 66 ~~~~I~AP~~G~V-------~~~~~~~G~~V~~g~~~l~~I~~~ 102 (116)
T 2k32_A 66 DHTEIKAPFDGTI-------GDALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp TEEEEECSSSEEE-------CCCSCCTTCEECTTTSCCEEEECS
T ss_pred CCCEEECCCCEEE-------EEEECCCCCEECCCCCEEEEEECC
T ss_conf 1789988988799-------989879999888999548999779
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.85 E-value=0.0027 Score=39.11 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=34.2
Q ss_pred CCEECCCCCEEECCEEEEEEC---------CCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 100012442010434899973---------772689998998199999848986836997299995
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEA---------MKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEA---------MKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~ 165 (171)
..+|++||+|++||.|+-+.- .-...-+.-..... +.+.....|..||+++.||
T Consensus 92 ~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vv~tn~~~~~---~~~~~~g~V~~Gd~i~~ik 154 (154)
T 2gpr_A 92 ESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKT---LEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCC---CSCBCCEEECTTCEEEEEC
T ss_pred EEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCE---EEECCCCCCCCCCEEEEEC
T ss_conf 99973899995999999987999986299983699998798735---7773478685899999969
No 51
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.79 E-value=0.001 Score=41.65 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=20.3
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEE
Q ss_conf 268704625677403676410001244201043489997
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiE 128 (171)
..|.||.-|++. +.+++.||.|+.||+||.|+
T Consensus 37 ~~v~a~~~G~v~-------~i~v~~G~~V~~G~~l~~i~ 68 (72)
T 1z6h_A 37 IPIVADRSGIVK-------EVKKKEGDFVNEGDVLLELS 68 (72)
T ss_dssp EEEECSSCEEEE-------EESSCTTCEECTTCEEEEEG
T ss_pred CCEECCCCEEEE-------EEEECCCCEECCCCEEEEEE
T ss_conf 305889798999-------99778979989999999994
No 52
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.69 E-value=0.00059 Score=43.11 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC
Q ss_conf 6626870462567740367641000124420104348999737
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM 130 (171)
-...|+||..|++. -+++.||.|+.||.||.||.-
T Consensus 41 ~~~~I~ap~sG~I~--------~~v~~Gd~V~~G~~l~~ie~~ 75 (84)
T 2kcc_A 41 MIMTLNVQERGRVK--------YIKRPGAVLEAGCVVARLELD 75 (84)
T ss_dssp CEEEEECSSSEEEE--------ECSCTTCCCCTTCCCEEEECS
T ss_pred EEEEEECCCCEEEE--------EEECCCCEECCCCEEEEEECC
T ss_conf 47899868898999--------998898999999999999458
No 53
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=96.64 E-value=0.00078 Score=42.36 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred CCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEE
Q ss_conf 6268704625677403676410001244201043489997
Q gi|254780267|r 89 YHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 89 ~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiE 128 (171)
...|.||..|++ .+.+|+.||.|+.||+|+.||
T Consensus 62 ~~~v~Ap~~G~V-------~~i~v~~Gd~V~~G~~L~~Ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTV-------KSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ----------------------------------------
T ss_pred CEEEEECCCEEE-------EEEEECCCCEECCCCEEEEEC
T ss_conf 389993889999-------899868979979999999979
No 54
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=96.54 E-value=0.0022 Score=39.63 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=30.1
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 99989981999998489868369972999953
Q gi|254780267|r 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 135 ~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
.|.||++|.|-+|+|+.||.|+.||+|+.||-
T Consensus 1097 ~V~AP~~GnVWKV~Vk~GD~VkaGq~L~ILEA 1128 (1165)
T 2qf7_A 1097 HVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp EEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred EECCCCCEEEEEEEECCCCEECCCCEEEEEEH
T ss_conf 77689996899999799999799998999966
No 55
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=96.48 E-value=0.0012 Score=41.28 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC
Q ss_conf 46626870462567740367641000124420104348999737
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM 130 (171)
.-...|.||.-|++. +.||+.||.|+.||+||.|+.-
T Consensus 49 K~~~~i~a~~~G~V~-------~i~v~~Gd~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 49 KMEHTIKSPKDGTVK-------KVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp SSEEEEECSSCEEEE-------EESCCTTEEECTTCBCEEECCC
T ss_pred CCCEEEECCCCCEEE-------EEEECCCCEECCCCEEEEEECC
T ss_conf 623799847578087-------9972898996899989999638
No 56
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=96.39 E-value=0.0034 Score=38.48 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 64100012442010434899973772689998998199999848986
Q gi|254780267|r 107 GSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQ 153 (171)
Q Consensus 107 ~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~ 153 (171)
|+..+|+.||+|++||+||-... -..+|.|+++|+|.---+.+|-
T Consensus 61 Ga~L~VkdG~~Vk~g~~la~WDP--~~~pIisE~~G~v~f~Di~egv 105 (190)
T 2auk_A 61 GAVLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDGQ 105 (190)
T ss_dssp TCEESSCTTCEECTTCEEEECCS--SEEEEECSSCEEEEEESCCBTT
T ss_pred CCEEEECCCCEECCCCEEEEECC--CCCEEEEEEEEEEEEEEEECCE
T ss_conf 75899869899738989998679--8852888861289999951747
No 57
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.37 E-value=0.0021 Score=39.74 Aligned_cols=33 Identities=45% Similarity=0.600 Sum_probs=30.0
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 899989981999998489868369972999953
Q gi|254780267|r 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 134 n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
.+|.||..|.|.+|+|+.||.|..||+|+.+|-
T Consensus 650 ~~V~APmpG~V~~v~V~~Gd~V~~G~~l~vlEA 682 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred CEECCCCCCEEEEEEECCCCEECCCCEEEEEEH
T ss_conf 843389994379999699998799999999974
No 58
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=96.36 E-value=0.0031 Score=38.72 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=28.1
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 99989981999998489868369972999953
Q gi|254780267|r 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 135 ~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
.|.||.+|.|-+|+|+.||.|+.||+|+.||-
T Consensus 1079 ~V~Ap~~GnVwkv~V~~Gd~V~~Gd~l~IlEA 1110 (1150)
T 3hbl_A 1079 HIGAQMPGSVTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEECSSSEEEEEECCCTTCEECTTCEEEEEES
T ss_pred EEECCCCEEEEEEEECCCCEECCCCEEEEEEH
T ss_conf 77068984789998089999799998999965
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.00 E-value=0.0044 Score=37.80 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=35.5
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 01244201043489997377268999899819999984898683699729999534
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
|+.|+--..=..-|.|++-+-. .|.|+.+|+|.+++|+.|+.|..||+|++|+.+
T Consensus 11 v~~g~i~~tv~~~G~v~~~~~~-~v~a~~~G~V~~v~v~~G~~V~~G~~L~~id~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDALRKV-DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEESSEE-ECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEEEEEEEEEEEEEEEEEE-EEECCCCEEEEEEECCCCCEECCCCEEEEECHH
T ss_conf 9998724999999999980899-998447789999998991998899989998819
No 60
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.65 E-value=0.0074 Score=36.43 Aligned_cols=69 Identities=23% Similarity=0.436 Sum_probs=51.9
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEE----CCEEEEEECCCEEEEEECCCCCEEEEE---------------
Q ss_conf 4662687046256774036764100012442010----434899973772689998998199999---------------
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE----GQTLLIIEAMKTMNHIVAPCSGKVQDI--------------- 147 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~----G~~l~iiEAMKm~n~I~a~~~G~I~~i--------------- 147 (171)
.+...|.||.-|+++ ++-++.|.|=. |+-++|+=. .+.|.||++|+|..+
T Consensus 10 ~~~i~v~APv~G~vi--------~L~~v~D~vFs~~~~G~G~AI~P~---~~~v~AP~dG~I~~i~~T~HAigi~t~~G~ 78 (161)
T 1f3z_A 10 TGTIEIIAPLSGEIV--------NIEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGV 78 (161)
T ss_dssp --CEEEECSSCEEEE--------EGGGSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred CCCEEEEECCCCEEE--------ECCCCCCHHHHCCCCCCEEEEECC---CCEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 896899963672798--------833098858826781262999836---998990789799998689979999948998
Q ss_pred --------------------ECCCCCCCCCCCEEEEEEE
Q ss_conf --------------------8489868369972999953
Q gi|254780267|r 148 --------------------NVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 148 --------------------~v~~G~~V~~gq~L~~i~~ 166 (171)
+|+.||.|..||+|+.+..
T Consensus 79 eiLiHiGidTv~l~G~gF~~~vk~Gd~V~~G~~L~~~D~ 117 (161)
T 1f3z_A 79 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred EEEEEECCCHHHCCCCCEEEEECCCCEEECCCEEEEECH
T ss_conf 999997645776189740899768999938989899879
No 61
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.56 E-value=0.0051 Score=37.43 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEE
Q ss_conf 466268704625677403676410001244201043489997
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiE 128 (171)
.-.+.|.||-.|++ .+.+|+.||.|..||.|+.||
T Consensus 46 K~~~~i~a~~~G~V-------~~i~v~~G~~V~~G~~L~~ie 80 (80)
T 1bdo_A 46 KMMNQIEADKSGTV-------KAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp TEEEEEECSSCEEE-------EEECSCTTCEECTTCEEEEEC
T ss_pred CCHHHCCCCCCEEE-------EEEEECCCCEECCCCEEEEEC
T ss_conf 20120659999899-------899868979989999999979
No 62
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=95.55 E-value=0.00039 Score=44.18 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECC
Q ss_conf 546626870462567740367641000124420104348999737
Q gi|254780267|r 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130 (171)
Q Consensus 86 ~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAM 130 (171)
..-.+.|.||.-|++ .+.+|+.||.|+.||+||.||.-
T Consensus 36 ~K~~~~v~a~~~G~v-------~~i~v~~Gd~V~~G~~l~~ie~~ 73 (85)
T 2k7v_A 36 DKASMEVPAPFAGVV-------KELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CCSEEEEECSSCBCC-------CEECSCTTCCBCTTSEEEEEECC
T ss_pred CCCEEEEECCCCEEE-------EEEEECCCCEECCCCEEEEEECC
T ss_conf 883799863789899-------89996898997999999999748
No 63
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.50 E-value=0.0084 Score=36.09 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 662687046256774036764100012442010434899973
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-...|.||-.|++ .+.||+.||.|+.||+||.||+
T Consensus 42 ~~~~i~a~~~G~v-------~~i~v~~G~~v~~G~~l~~ie~ 76 (80)
T 1qjo_A 42 ASMEVPAPFAGVV-------KELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp SCEEEEBSSCEEE-------EECCCCTTCEECTTCCCEEEES
T ss_pred CCEEEECCCCEEE-------EEEEECCCCEECCCCEEEEEEC
T ss_conf 4519984652799-------9999589899589999999964
No 64
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=95.38 E-value=0.0089 Score=35.93 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCC
Q ss_conf 6268704625677403676410001244201043489997377
Q gi|254780267|r 89 YHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMK 131 (171)
Q Consensus 89 ~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMK 131 (171)
...|.||.-|++. ..||+.||.|+.||+|+.||.-+
T Consensus 47 ~~ei~a~~~G~I~-------~i~v~eG~~V~~G~~L~~Ie~e~ 82 (93)
T 1k8m_A 47 SVTITSRYDGVIK-------KLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EEECCCSSCEEEE-------EECCCSSCEECTTSEEEEEECSC
T ss_pred EEEEECCCCEEEE-------EEEECCCCEECCCCEEEEEECCC
T ss_conf 8978838899999-------99538999988999999997778
No 65
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.26 E-value=0.015 Score=34.51 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 662687046256774036764100012442010434899973
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-...|.||..|++ .+.+|+.||.|+.||+|+.||.
T Consensus 40 ~~~~i~a~~~G~v-------~~i~v~~G~~V~~G~~l~~ie~ 74 (79)
T 1iyu_A 40 ASMEVPSPKAGVV-------KSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp CEEEEECSSSSEE-------EEESCCTTCEEETTSEEEEEEC
T ss_pred CEEEEECCCCEEE-------EEEEECCCCEECCCCEEEEEEC
T ss_conf 1589987989999-------9993589699899999999947
No 66
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.63 E-value=0.018 Score=34.07 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 4662687046256774036764100012442010434899973
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
.-...|.||.-|++. +.+++.||.|+.||+||+|+.
T Consensus 42 K~~~ei~ap~~G~v~-------~i~v~~G~~v~~G~~l~~i~~ 77 (79)
T 1ghj_A 42 KVVMEVLAEADGVIA-------EIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCEEEEECSSCEEEE-------EESSCTTCEECTTCEEEEECC
T ss_pred CEEEEEEECCCEEEE-------EEEECCCCEECCCCEEEEEEC
T ss_conf 658999834689999-------998489999789999999947
No 67
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=94.40 E-value=0.013 Score=34.85 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=27.8
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 999899819999984898683699729999534
Q gi|254780267|r 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 135 ~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
.|.|+++|+|.+|+|++|+.|..||+|++|+..
T Consensus 24 ~I~a~v~G~V~~i~v~~G~~VkkG~~L~~ld~~ 56 (277)
T 2f1m_A 24 EVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp EECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred EEEEECCEEEEEEECCCCCEECCCCEEEEECCH
T ss_conf 999545789999987993998899999998858
No 68
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.28 E-value=0.018 Score=34.03 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=18.8
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEE
Q ss_conf 26870462567740367641000124420104348999
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLII 127 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~ii 127 (171)
..|.++..|++. ..+|+.||.|++||+|+.|
T Consensus 44 ~~v~~~v~G~V~-------~v~V~~Gd~VkkGd~L~~l 74 (369)
T 1vf7_A 44 AEVRPQVNGIIL-------KRLFKEGSDVKAGQQLYQI 74 (369)
T ss_dssp EEECCSSCEEEE-------ECCSCSSEEECTTSEEEEE
T ss_pred EEEEEECCEEEE-------EEECCCCCEECCCCEEEEE
T ss_conf 999954578999-------9988995998899989998
No 69
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.15 E-value=0.018 Score=34.02 Aligned_cols=69 Identities=26% Similarity=0.472 Sum_probs=52.4
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCE----EECCEEEEEECCCEEEEEECCCCCEEEEE----------------
Q ss_conf 6626870462567740367641000124420----10434899973772689998998199999----------------
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLV----VEGQTLLIIEAMKTMNHIVAPCSGKVQDI---------------- 147 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~V----k~G~~l~iiEAMKm~n~I~a~~~G~I~~i---------------- 147 (171)
+...|.||+.|++. ++-++.|.| --|+-++|+=. .+.|.||++|+|..+
T Consensus 11 ~~~~i~aPv~G~vi--------~L~~V~D~vFs~~~mG~G~aI~P~---~~~v~AP~~G~V~~v~~T~HAigi~t~~G~e 79 (162)
T 1ax3_A 11 GEEVFVSPITGEIH--------PITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGRE 79 (162)
T ss_dssp CCSSCCCCCSEEEE--------EGGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCE
T ss_pred CCEEEEECCCCEEE--------ECCCCCCHHHCCCCCCCCEEEECC---CCEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 97599934886898--------823197746346780274899827---9979837896999985689699999799979
Q ss_pred -------------------ECCCCCCCCCCCEEEEEEEC
Q ss_conf -------------------84898683699729999534
Q gi|254780267|r 148 -------------------NVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 148 -------------------~v~~G~~V~~gq~L~~i~~~ 167 (171)
+|+.||.|..||+|+.+...
T Consensus 80 vLiHiGiDTV~L~G~gF~~~V~~Gd~V~~G~~L~~~D~~ 118 (162)
T 1ax3_A 80 ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred EEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHH
T ss_conf 999986454321898318998269999899999997599
No 70
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=93.80 E-value=0.037 Score=32.21 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCC-CEEECCEEEEEECC
Q ss_conf 466268704625677403676410001244-20104348999737
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGN-LVVEGQTLLIIEAM 130 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd-~Vk~G~~l~iiEAM 130 (171)
.-...|.||--|+++ +.+|++|| .|+.|++||+|..=
T Consensus 68 Ka~~EI~A~~~G~l~-------~i~v~eGd~~v~vG~~Ia~I~~~ 105 (128)
T 1y8o_B 68 KATIGFEVQEEGYLA-------KILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp SCEEEEECCSCEEEE-------EESSCTTCCSEETTCEEEEEESS
T ss_pred CEEEEEECCCCEEEE-------EEEECCCCEEECCCCEEEEEECC
T ss_conf 657988426787999-------99966798388189989999347
No 71
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=93.54 E-value=0.037 Score=32.18 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=29.7
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 662687046256774036764100012442010434899973
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-...|.||--|++ .+.+|+.||.|+.||+|+.||.
T Consensus 43 ~~~~i~a~~~G~v-------~~i~v~~G~~V~~G~~l~~ie~ 77 (81)
T 1gjx_A 43 ATMDVPAEVAGVV-------KEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CEEEECCCCSSBB-------CCCCCCSSCEECSSSCCCEECC
T ss_pred CEEEEECCCCEEE-------EEEEECCCCEECCCCEEEEEEC
T ss_conf 3799980554799-------9998289899889999999945
No 72
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=93.50 E-value=0.081 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=28.7
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCC-CEEECCEEEEEEC
Q ss_conf 66268704625677403676410001244-2010434899973
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGN-LVVEGQTLLIIEA 129 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd-~Vk~G~~l~iiEA 129 (171)
-...|.||.-|++. +.+|+.|| .|+.||+||+|..
T Consensus 47 ~~~ev~a~~~G~l~-------~i~v~eGd~~v~vG~~ia~i~~ 82 (87)
T 3crk_C 47 ATIGFEVQEEGYLA-------KILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CEEEEECCSCEEEE-------EESSCTTCCCEETTCEEEEEES
T ss_pred EEEEEECCCCEEEE-------EEEECCCCEEECCCCEEEEEEC
T ss_conf 88868718999999-------9997789829759998999956
No 73
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.43 E-value=0.062 Score=30.83 Aligned_cols=66 Identities=29% Similarity=0.346 Sum_probs=42.7
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCE----EECCEEEEEECCCEEEEEECCCCCEEEEE------------------
Q ss_conf 26870462567740367641000124420----10434899973772689998998199999------------------
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLV----VEGQTLLIIEAMKTMNHIVAPCSGKVQDI------------------ 147 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~V----k~G~~l~iiEAMKm~n~I~a~~~G~I~~i------------------ 147 (171)
..|.||+-|.++ ++-++-|.| --||-++|.=. .+.|.||++|+|..+
T Consensus 8 ~~i~APv~G~vi--------~l~~V~D~vFs~k~mG~G~aI~P~---~~~v~AP~dG~V~~i~~T~HAigi~t~~G~eiL 76 (154)
T 2gpr_A 8 LKVLAPCDGTII--------TLDEVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL 76 (154)
T ss_dssp EEEECSSSEEEE--------CGGGSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred EEEEECCCCEEE--------ECCCCCCHHHCCCCCCCEEEEECC---CCEEECCCCCEEEEECCCCCEEEEECCCCCEEE
T ss_conf 099964773898--------813286736356880162999927---997992678299998689979999969998999
Q ss_pred -----------------ECCCCCCCCCCCEEEEEEE
Q ss_conf -----------------8489868369972999953
Q gi|254780267|r 148 -----------------NVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 148 -----------------~v~~G~~V~~gq~L~~i~~ 166 (171)
+|+.||.|..||+|+++..
T Consensus 77 IHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 112 (154)
T 2gpr_A 77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred EEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 997625410389736999738999959999999879
No 74
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=93.12 E-value=0.04 Score=31.96 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=29.1
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCC-EEECCEEEEEEC
Q ss_conf 4662687046256774036764100012442-010434899973
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNL-VVEGQTLLIIEA 129 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~-Vk~G~~l~iiEA 129 (171)
.-...|.||--|++. +.+++.||. |+.|++||+|..
T Consensus 48 Ka~~ev~a~~~G~l~-------~ilv~eGd~~v~vG~~ia~i~~ 84 (108)
T 2dne_A 48 KATVGFESLEECYMA-------KILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp SCEEEEECSSSEEEE-------ECSSCTTCCSEETTCEEEEEES
T ss_pred CEEEEEEECCCEEEE-------EEEECCCCCEECCCCEEEEEEC
T ss_conf 576898607896999-------9996679848769998999924
No 75
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.03 E-value=0.02 Score=33.83 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 4662687046256774036764100012442010434899973
Q gi|254780267|r 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 87 ~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
.-...|.||--|++ .+.++++||.|+.||+||+|+.
T Consensus 43 K~~~ei~a~~~G~l-------~~i~v~~G~~v~vG~~l~~i~e 78 (80)
T 1pmr_A 43 KVVLEVPASADGIL-------DAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SCCCCCBCCSBCCC-------CBCTTCTTCEECSSSEEEBCCC
T ss_pred CEEEEEEECCCEEE-------EEEEECCCCEECCCCEEEEEEC
T ss_conf 65899870368999-------9998689999879999999979
No 76
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.56 E-value=0.048 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCCEEEECCCEEEEEECCCCCCCEECCCCC-EEECCEEEEEEC
Q ss_conf 662687046256774036764100012442-010434899973
Q gi|254780267|r 88 NYHTVTSPMVGTAYLASSPGSDPFVNKGNL-VVEGQTLLIIEA 129 (171)
Q Consensus 88 ~~~~I~SPmvGtfy~~psP~~~~~V~vGd~-Vk~G~~l~iiEA 129 (171)
-...|.||--|++. +.+|+.||. |+.||+||+|..
T Consensus 49 ~~~ev~a~~~G~l~-------~i~v~~Gd~~v~vG~~i~~i~~ 84 (98)
T 2dnc_A 49 AVVTLDASDDGILA-------KIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp CEEEEECSSCEEEE-------ECSSCTTCCCEESSCEEEEEEC
T ss_pred EEEEEECCCCEEEE-------EEEECCCCEEECCCCEEEEEEC
T ss_conf 89999748998999-------9997689829779998999903
No 77
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.91 E-value=0.2 Score=27.68 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=33.7
Q ss_pred CEECCCCCEEECCEEEEEECCCEEE-EEECCCCCEEEEEE
Q ss_conf 0001244201043489997377268-99989981999998
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEAMKTMN-HIVAPCSGKVQDIN 148 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEAMKm~n-~I~a~~~G~I~~i~ 148 (171)
+++.+||+|.+||.|+.|..=|-+. -|.||++|+|.-+.
T Consensus 114 ~i~~~G~rV~~gd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred EECCCCCEECCCCEEEEEEECCCCEEEECCCCCEEEEEEE
T ss_conf 9757553761487279998268507994499857999997
No 78
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=91.38 E-value=0.028 Score=32.92 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred EEEECCCCCEEEEEEC-CCCCCCCCCCEEEEEEE
Q ss_conf 8999899819999984-89868369972999953
Q gi|254780267|r 134 NHIVAPCSGKVQDINV-KDGQSVEYGDALLVLEK 166 (171)
Q Consensus 134 n~I~a~~~G~I~~i~v-~~G~~V~~gq~L~~i~~ 166 (171)
..|.|+++|.|.++++ ..|+.|..||+|++|..
T Consensus 122 ~~v~a~~~G~I~~l~v~~~Gd~VkkGq~L~~lds 155 (407)
T 3h9i_A 122 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (407)
T ss_dssp EEEEEESCCCCBCCCSCCSSCEESTTCCCEEEEC
T ss_pred EEEECCCCEEEEEEEECCCCCEECCCCEEEEECC
T ss_conf 9996566779999950689998858988999878
No 79
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=86.81 E-value=0.53 Score=25.15 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=11.9
Q ss_pred CCEECCCCCEEECCEEEEEE
Q ss_conf 10001244201043489997
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiE 128 (171)
..+|++||+|++||+|+.+=
T Consensus 283 ~~~V~~G~~V~~Gq~Ig~vG 302 (361)
T 2gu1_A 283 KILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp EECCCTTCEECTTCEEEECC
T ss_pred CCCCCCCCEECCCCEEEEEC
T ss_conf 11338899999799999876
No 80
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=86.40 E-value=0.89 Score=23.81 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=15.9
Q ss_pred CEECCCCCEEECCEEEEEECCC
Q ss_conf 0001244201043489997377
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEAMK 131 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEAMK 131 (171)
-++++||+|++||+||.|-+-+
T Consensus 383 ~~~k~Gd~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp ESCCTTCEECTTSEEEEEEESS
T ss_pred EECCCCCEECCCCEEEEEECCC
T ss_conf 8357959967999189997486
No 81
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=85.80 E-value=0.12 Score=29.02 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=16.1
Q ss_pred EEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 687046256774036764100012442010434899973
Q gi|254780267|r 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 91 ~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
.|.||.-|+. .+.++++||.|..|++||+|++
T Consensus 47 ev~s~~~G~l-------~~i~~~~G~~v~vG~~i~~i~~ 78 (428)
T 3dva_I 47 EIPSPVKGKV-------LEILVPEGTVATVGQTLITLDA 78 (428)
T ss_dssp ---------------------------------------
T ss_pred EECCCCCEEE-------EEEEECCCCEEECCCEEEEEEC
T ss_conf 9746899799-------9998489999807998999955
No 82
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=85.75 E-value=0.99 Score=23.52 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=12.4
Q ss_pred CEECCCCCEEECCEEEEEEC
Q ss_conf 00012442010434899973
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEA 129 (171)
-++++||+|++||+||.|-+
T Consensus 372 ~~~k~G~~V~~g~~l~~i~~ 391 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYH 391 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEE
T ss_pred EECCCCCEECCCCEEEEEEC
T ss_conf 86258498679991899967
No 83
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=85.31 E-value=1.7 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=12.7
Q ss_pred CCEECCCCCEEECCEEEEEEC
Q ss_conf 100012442010434899973
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEA 129 (171)
.-++++||+|++||+||.|-+
T Consensus 379 ~~~~~~G~~V~~g~~l~~i~~ 399 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIHS 399 (433)
T ss_dssp EESCCTTCEECTTCEEEEEEE
T ss_pred EEECCCCCEECCCCEEEEEEC
T ss_conf 884368499679991899976
No 84
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=84.91 E-value=1.9 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=12.0
Q ss_pred CEECCCCCEEECCEEEEEECC
Q ss_conf 000124420104348999737
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEAM 130 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEAM 130 (171)
-++++||+|++||+||.|-+-
T Consensus 415 l~~k~Gd~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEES
T ss_pred EECCCCCEECCCCEEEEEECC
T ss_conf 625686985699918999669
No 85
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=78.69 E-value=1.5 Score=22.48 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.1
Q ss_pred EEECCCCCCCCCCCEEE
Q ss_conf 99848986836997299
Q gi|254780267|r 146 DINVKDGQSVEYGDALL 162 (171)
Q Consensus 146 ~i~v~~G~~V~~gq~L~ 162 (171)
+++|.+||.|..||+|-
T Consensus 212 ~L~V~eGd~VkaGq~LT 228 (249)
T 1ci3_M 212 ELIVSEGEEVAAGAALT 228 (249)
T ss_dssp CBCCCTTCEECTTCBSB
T ss_pred EEEECCCCEEECCCCCC
T ss_conf 15777899980898424
No 86
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=77.55 E-value=3.1 Score=20.48 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=30.1
Q ss_pred CEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 268704625677403676410001244201043489997377268999899819999984898683699729999534
Q gi|254780267|r 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167 (171)
Q Consensus 90 ~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~~ 167 (171)
..|.|+.-|++ +.+|+.---|.+|.|-..-..+ .+-+. ..+|.|+.||.|..||.|=.+-.+
T Consensus 191 t~V~A~~~G~V-----------~~~~~~~~~G~~v~i~hg~g~~-t~Y~h----ls~i~V~~G~~V~~G~~IG~vG~t 252 (282)
T 2hsi_A 191 TPIKAPAAGKV-----------ILIGDYFFNGKTVFVDHGQGFI-SMFCH----LSKIDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp CEEECSSCEEE-----------EEEEEETTTEEEEEEEEETTEE-EEEEE----ESEECSCTTCEECTTCEEEECCCT
T ss_pred CCEEEEEEEEE-----------EECCCCCCCCCEEEEECCCCEE-EEECC----CCCCCCCCCCEECCCCEEEEECCC
T ss_conf 72740571274-----------7413568798099998699779-99636----360353879999989979974589
No 87
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=75.97 E-value=0.75 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=17.0
Q ss_pred CCEECCCCCEEECCEEEEEEC
Q ss_conf 100012442010434899973
Q gi|254780267|r 109 DPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~~l~iiEA 129 (171)
...|++||+|++||.|+.+=.
T Consensus 250 ~~~v~~G~~V~~G~~ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred CCCCCCCCEECCCCEEEEECC
T ss_conf 456888989768977997578
No 88
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=75.31 E-value=2 Score=21.68 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.3
Q ss_pred EEECCCCCCCCCCCEEE
Q ss_conf 99848986836997299
Q gi|254780267|r 146 DINVKDGQSVEYGDALL 162 (171)
Q Consensus 146 ~i~v~~G~~V~~gq~L~ 162 (171)
+++|.+||.|..||+|-
T Consensus 212 ~L~V~eGD~V~aGq~LT 228 (249)
T 2jxm_B 212 ELIVAVGDTVEAGQLLT 228 (249)
T ss_dssp CBCCCTTCEECTTCBSB
T ss_pred EEEECCCCEECCCCCCC
T ss_conf 14778999985898424
No 89
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=75.30 E-value=2.4 Score=21.22 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEE-E-------EEECCCCC
Q ss_conf 333454662687046256774036764100012442010434899973772689998998199-9-------99848986
Q gi|254780267|r 82 PLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKV-Q-------DINVKDGQ 153 (171)
Q Consensus 82 ~~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I-~-------~i~v~~G~ 153 (171)
|.....+...+.|+..|++- ++..+.. ++|-...+|+ . .+|.. . .++|.+||
T Consensus 161 P~G~KsnN~a~~As~aGtIs---------~I~~~~~-eKG~~~I~I~---------~-~dGe~v~~~IP~G~~LiV~eGd 220 (292)
T 1q90_A 161 PDGKKSNNTIYNASAAGKIV---------AITALSE-KKGGFEVSIE---------K-ANGEVVVDKIPAGPDLIVKEGQ 220 (292)
T ss_dssp TTSCCCTTSCCBCSSSEEEE---------EEEECCT-TTCCEEEEEE---------C-SSSCEEEEEECSSSCBCCCTTC
T ss_pred CCCCCCCCCEEECCCCEEEE---------EEEEECC-CCCCEEEEEE---------C-CCCCEEEEECCCCCEEEECCCC
T ss_conf 87705778668167875998---------8544026-7897899998---------8-9998899974899978966899
Q ss_pred CCCCCCEEE
Q ss_conf 836997299
Q gi|254780267|r 154 SVEYGDALL 162 (171)
Q Consensus 154 ~V~~gq~L~ 162 (171)
.|..||+|-
T Consensus 221 ~VkaGq~LT 229 (292)
T 1q90_A 221 TVQADQPLT 229 (292)
T ss_dssp EECTTCBSB
T ss_pred EEECCCCCC
T ss_conf 980898034
No 90
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=74.48 E-value=2.1 Score=21.54 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=13.7
Q ss_pred CEECCCCCEEECCEEEEEEC
Q ss_conf 00012442010434899973
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEA 129 (171)
-++++||+|++||+||.|-+
T Consensus 385 ~~~k~G~~V~~g~~l~~i~~ 404 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHA 404 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEE
T ss_pred EECCCCCEECCCCEEEEEEC
T ss_conf 84268698679990899974
No 91
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=68.26 E-value=6.1 Score=18.73 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=12.6
Q ss_pred EEEECCCCCCCCCCCEEEEE
Q ss_conf 99984898683699729999
Q gi|254780267|r 145 QDINVKDGQSVEYGDALLVL 164 (171)
Q Consensus 145 ~~i~v~~G~~V~~gq~L~~i 164 (171)
.++.|+.||.|..||.|=.+
T Consensus 237 ~~i~Vk~Gq~V~~Gq~IG~v 256 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CCCCCCCCCEECCCCEEEEE
T ss_conf 82566888999978999986
No 92
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=65.00 E-value=1.7 Score=22.09 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.8
Q ss_pred EECCCCCEEECCEEEEE
Q ss_conf 00124420104348999
Q gi|254780267|r 111 FVNKGNLVVEGQTLLII 127 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~ii 127 (171)
.|++||+|++||+|+.+
T Consensus 183 ~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp SCCTTCEECTTCEEEEC
T ss_pred CCCCCCEECCCCEEEEE
T ss_conf 56889999868999982
No 93
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=58.28 E-value=3.5 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.7
Q ss_pred CCCEECCCCCEEECCEEEEE
Q ss_conf 41000124420104348999
Q gi|254780267|r 108 SDPFVNKGNLVVEGQTLLII 127 (171)
Q Consensus 108 ~~~~V~vGd~Vk~G~~l~ii 127 (171)
....|++||+|+.||.|+++
T Consensus 83 ~~~~V~~G~~V~~Gq~IG~~ 102 (182)
T 3it5_A 83 DQIQVSNGQQVSADTKLGVY 102 (182)
T ss_dssp ESCCCCTTCEECTTCEEEEE
T ss_pred EECCCCCCCEEECCCEEEEE
T ss_conf 01267689899477288275
No 94
>1vh9_A P15, hypothetical protein YBDB; structural genomics, unknown function; 2.15A {Escherichia coli} SCOP: d.38.1.5
Probab=54.99 E-value=11 Score=17.27 Aligned_cols=111 Identities=8% Similarity=0.063 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHH--HHHHCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32139899999999--9986597089995099699997067765211332023444554222332211223444445443
Q gi|254780267|r 5 KQKINLTLIRNLAN--ILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLIP 82 (171)
Q Consensus 5 ~~~mdi~~Ik~Li~--~~~es~l~eleie~~~~kI~I~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (171)
+.+|+++.|++..+ +++--++.-.+++.+...+++.-.....+ +...........-.+....-. ..
T Consensus 6 ~~~~~le~ln~~~~~~~~~~Lgi~~~~~~~g~~~~~l~v~~~~~n----------~~G~lHGG~~~al~D~a~g~a--~~ 73 (149)
T 1vh9_A 6 KRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQ----------PFGLLHGGASAALAETLGSMA--GF 73 (149)
T ss_dssp SSCCCHHHHHHTSTTSHHHHTTCEEEEECSSCEEEEEECSTTTBC----------TTSSBCHHHHHHHHHHHHHHH--HH
T ss_pred CCCCCHHHHHHHCCCHHHHHCCCEEEEEECCEEEEEEECCHHHCC----------CCCCCCHHHHHHHHHHHHHHH--HH
T ss_conf 566899999864723188856969999979989999987889969----------999572888788888888999--99
Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 33454662687046256774036764100012442010434899973
Q gi|254780267|r 83 LLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 83 ~~~~~~~~~I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
.....+...++.- ..+.|++|.++.+ +.-+|..++.|-.+++.|+
T Consensus 74 ~~~~~~~~~~t~~-~~i~fl~~~~~g~-l~a~a~v~~~Gr~~~~~e~ 118 (149)
T 1vh9_A 74 MMTRDGQCVVGTE-LNATHHRPVSEGK-VRGVCQPLHLGRQNQSWEI 118 (149)
T ss_dssp TTCCTTCCEEEEE-EEEEECSCCCSSE-EEEEEEEEEECSSEEEEEE
T ss_pred HHHCCCCEEEEHH-EEEEEECCCCCCE-EEEEEEEEECCCCEEEEEE
T ss_conf 7404786067001-0226762589973-9999999991788999999
No 95
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=47.44 E-value=8.3 Score=17.90 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=27.3
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 012442010434899973772689998998199999848986836
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVE 156 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~ 156 (171)
+.|||+|+.-..=.+||.-.--.+|-+ +|.|+.|++-.+..|.
T Consensus 28 y~VGD~I~Vky~~~~ie~~GkVt~Vd~--~gki~~vfiPsakIIa 70 (283)
T 3fo8_D 28 YAVGDKITVKYVSDDIETEGKITEVDA--DGKIKKINIPTAKIIA 70 (283)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEEECT--TCCEEEEECCCHHHHH
T ss_pred CEECCEEEEEECCCEEECCCEEEEEEC--CCCEEEEECCHHHHHH
T ss_conf 371778999987834603863999916--9968999877399999
No 96
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=42.57 E-value=13 Score=16.81 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=13.0
Q ss_pred CEECCCCCEEECCEEEEEE
Q ss_conf 0001244201043489997
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiE 128 (171)
.+++.|+.|++||+||.++
T Consensus 112 ~~~~dG~~v~~g~~i~~i~ 130 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EECCCCCEEECCCEEEEEE
T ss_conf 8818999873896899981
No 97
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Escherichia coli K12}
Probab=40.52 E-value=18 Score=15.88 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=31.6
Q ss_pred ECCCCCEEECCEEEEEECCC---EEEEEECCCCCEEEEEECCCCCC
Q ss_conf 01244201043489997377---26899989981999998489868
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMK---TMNHIVAPCSGKVQDINVKDGQS 154 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMK---m~n~I~a~~~G~I~~i~v~~G~~ 154 (171)
+.-|-+-..|+++-+.|||| ....|.- -.|+|.+|-|.+++.
T Consensus 45 lrsGM~t~nG~~v~~~qa~~~d~v~lvi~G-~~G~V~rI~V~d~~i 89 (166)
T 2qzb_A 45 LRSGMKTANGNVVRFFEVMKGDNVAMVING-DQGTISRIDVLDSDI 89 (166)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEC---CBCCEEEECCTTC
T ss_pred EECCCCCCCCCEEEEEEEECCCCEEEEEEC-CCCCEEEEEEECCCC
T ss_conf 743665689987999875359947899968-997189899858876
No 98
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C
Probab=38.09 E-value=20 Score=15.65 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=32.0
Q ss_pred CEECCCCCEEECCEEEEEECCCEEEEEECC--CCCEEEEEE
Q ss_conf 000124420104348999737726899989--981999998
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEAMKTMNHIVAP--CSGKVQDIN 148 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~--~~G~I~~i~ 148 (171)
|.+++||.|..||+++.+..=-+.|.|..| +.|.+..|.
T Consensus 121 p~~~~g~~v~~G~i~g~v~e~~~~h~i~vpp~~~~~v~~~~ 161 (578)
T 3gqb_A 121 PMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVK 161 (578)
T ss_dssp ECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 33455871047860336546653210125877664078861
No 99
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1
Probab=36.31 E-value=14 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=15.7
Q ss_pred CCCEEEEEECCCCCCCEECCCCCEE
Q ss_conf 4625677403676410001244201
Q gi|254780267|r 95 PMVGTAYLASSPGSDPFVNKGNLVV 119 (171)
Q Consensus 95 PmvGtfy~~psP~~~~~V~vGd~Vk 119 (171)
+++|++|+.+. ..|-+++|+++.
T Consensus 101 ~LPG~I~v~~~--~~P~i~vG~~I~ 123 (129)
T 2f9h_A 101 VIRNGVYLTPH--QLPKITIGTTID 123 (129)
T ss_dssp SCTTEEEEESC--SCCCCCTTCEEE
T ss_pred CCCCEEEECCC--CCCCCCCCCEEE
T ss_conf 78986998878--899788999999
No 100
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=33.01 E-value=19 Score=15.74 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=12.2
Q ss_pred EECCCCCEEECCEEEEEE
Q ss_conf 001244201043489997
Q gi|254780267|r 111 FVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~iiE 128 (171)
+++.|+.|++||+|+-|+
T Consensus 76 ~~~dG~~v~~g~~I~~i~ 93 (299)
T 2jbm_A 76 FLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp SSCTTCEECSSEEEEEEE
T ss_pred EECCCCEEECCCEEEEEE
T ss_conf 966799885385799997
No 101
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=32.56 E-value=23 Score=15.26 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=15.0
Q ss_pred CEECCCCCEEECCEEEEEEC
Q ss_conf 00012442010434899973
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEA 129 (171)
.+++.|+.|++||+|+.++.
T Consensus 76 ~~~~dG~~v~~g~~i~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EECCCCCEECCCCEEEEEEE
T ss_conf 78489988658989999997
No 102
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=32.03 E-value=24 Score=15.05 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=13.3
Q ss_pred EECCCCCCCCCCCEEE
Q ss_conf 9848986836997299
Q gi|254780267|r 147 INVKDGQSVEYGDALL 162 (171)
Q Consensus 147 i~v~~G~~V~~gq~L~ 162 (171)
++|+.|+.|..||||-
T Consensus 213 liV~~G~~V~~~qpLT 228 (252)
T 1hcz_A 213 LLVSEGESIKLDQPLT 228 (252)
T ss_dssp BCCCTTCEECTTCBSB
T ss_pred EEECCCCEEECCCCCC
T ss_conf 8880899886798665
No 103
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=31.31 E-value=24 Score=15.06 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=14.8
Q ss_pred CEECCCCCEEECCEEEEEEC
Q ss_conf 00012442010434899973
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEA 129 (171)
.+++.|+.|++||+|+.++.
T Consensus 90 ~~~~dG~~v~~g~~i~~i~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EECCCCCEEECCCEEEEEEE
T ss_conf 66488989637988999996
No 104
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.44 E-value=26 Score=14.89 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=24.9
Q ss_pred ECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 012442010434899973772689998998199999
Q gi|254780267|r 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDI 147 (171)
Q Consensus 112 V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i 147 (171)
.++||.|+-|+.-+.++.+.+.+...-..+|.+.-|
T Consensus 130 f~vGD~I~i~~~~G~V~~I~lr~T~i~t~dg~~v~I 165 (286)
T 2vv5_A 130 FRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVI 165 (286)
T ss_dssp SCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEE
T ss_pred CCCCCEEEECCCEEEEEEEEEEEEEEECCCCCEEEE
T ss_conf 027888997795699999333489988799989999
No 105
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=30.16 E-value=20 Score=15.56 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=14.1
Q ss_pred CEECCCCCEEECCEEEEEE
Q ss_conf 0001244201043489997
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiE 128 (171)
-+++.|+.|++||+|+.++
T Consensus 75 ~~~~dG~~v~~g~~i~~i~ 93 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp ESCCTTCEEESCEEEEEEE
T ss_pred EEECCCCEECCCCEEEEEE
T ss_conf 9927998821783789999
No 106
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=29.03 E-value=28 Score=14.74 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.8
Q ss_pred EECCCCCEEECCEEEEEE
Q ss_conf 001244201043489997
Q gi|254780267|r 111 FVNKGNLVVEGQTLLIIE 128 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~iiE 128 (171)
+++.|+.|++|++|+.|+
T Consensus 63 ~~~dG~~v~~g~~Il~i~ 80 (273)
T 2b7n_A 63 TIKDKERFKPKDALMEIR 80 (273)
T ss_dssp ECCTTCEECTTCEEEEEE
T ss_pred EECCCCEEECCCEEEEEE
T ss_conf 733763750898999998
No 107
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=28.46 E-value=14 Score=16.45 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEEEEECCCCCE-EEE-------EECCCCCCCCCCCEEE
Q ss_conf 268999899819-999-------9848986836997299
Q gi|254780267|r 132 TMNHIVAPCSGK-VQD-------INVKDGQSVEYGDALL 162 (171)
Q Consensus 132 m~n~I~a~~~G~-I~~-------i~v~~G~~V~~gq~L~ 162 (171)
....|... +|. +.+ ++|..|+.|..||||-
T Consensus 192 ~~v~I~~~-~G~~v~~~iP~Gp~l~V~~G~~v~~~qpLT 229 (251)
T 1e2w_A 192 FEVSIEKA-NGEVVVDKIPAGPDLIVKEGQTVQADQPLT 229 (251)
T ss_dssp EEEEEECT-TSCEEEEEECSSSCBCCCTTCEECTTCBCB
T ss_pred EEEEEECC-CCCEEEEECCCCCEEEEECCCEEECCCCCC
T ss_conf 79999878-998987832899858870898886798555
No 108
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=26.94 E-value=18 Score=15.93 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=35.0
Q ss_pred EECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEEC---------------CCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 7046256774036764100012442010434899973---------------7726899989981999998489868369
Q gi|254780267|r 93 TSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA---------------MKTMNHIVAPCSGKVQDINVKDGQSVEY 157 (171)
Q Consensus 93 ~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA---------------MKm~n~I~a~~~G~I~~i~v~~G~~V~~ 157 (171)
+.|.+|.+-. .-..|.+.+.++.||.+.++=. --.-+||.+-.+-.|.++++.+|..|..
T Consensus 309 ~~pivG~isM-----D~~~vdv~~~~~vGD~V~l~G~~g~~~it~~~~A~~~~ti~yEil~~l~~Rv~R~Y~~~~~~~~~ 383 (395)
T 3hur_A 309 RMPIIGRITM-----DQTMVKLDRKYPIGTRVTLIGKDGGEQITVEEVANYSHTIVDEIQTTLAPRIKRIYTGDLAEVIG 383 (395)
T ss_dssp EEEBCSCCCS-----SCEEEECSSCCCTTCEEEEEESSTTCCSEEEEEEECSSCEEEEEEECSCTTSCEEEESHHHHHTT
T ss_pred EEEEEEEECC-----CEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCEEEEE
T ss_conf 9898618834-----52899898999999999999589998639999999878970157528788888499189859972
No 109
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=26.86 E-value=30 Score=14.51 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=14.7
Q ss_pred CEECCCCCEEECCEEEEEEC
Q ss_conf 00012442010434899973
Q gi|254780267|r 110 PFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 110 ~~V~vGd~Vk~G~~l~iiEA 129 (171)
.+++.|+.|++|++|+.++.
T Consensus 89 ~~~~dG~~v~~g~~i~~i~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EECCCCCEEECCCEEEEEEE
T ss_conf 96489858871865799995
No 110
>3e29_A Uncharacterized protein Q7WE92_borbr; Q7WE92 NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bordetella bronchiseptica}
Probab=26.84 E-value=30 Score=14.50 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=33.2
Q ss_pred EEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 67740367641000124420104348999737726899989981999998489868369972999953
Q gi|254780267|r 99 TAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166 (171)
Q Consensus 99 tfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I~~i~v~~G~~V~~gq~L~~i~~ 166 (171)
+=|++|.++.+ ++-.|.-++.|..++++++ +|. -++|..|..++-.|.|++
T Consensus 85 i~flrp~~~g~-l~a~a~v~~~Gr~~~~~~~-----~i~-----------~~~g~lvA~a~~tf~v~~ 135 (144)
T 3e29_A 85 VDYHRVATPGD-LRAEGQVIHFGKRFATAHA-----RVL-----------DMDGNLVASGRALYLIRA 135 (144)
T ss_dssp EEECSCCCSSC-EEEEEEEEEECSSEEEEEE-----EEE-----------ETTCCEEEEEEEEEECC-
T ss_pred EEEECCCCCCE-EEEEEEEEEECCCEEEEEE-----EEE-----------ECCCCEEEEEEEEEEECC
T ss_conf 99976788966-9999999992887999999-----999-----------799999999999999669
No 111
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=26.14 E-value=14 Score=16.53 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=8.8
Q ss_pred EECCCCCCCCCCCEE
Q ss_conf 984898683699729
Q gi|254780267|r 147 INVKDGQSVEYGDAL 161 (171)
Q Consensus 147 i~v~~G~~V~~gq~L 161 (171)
++|+.|+.|..||||
T Consensus 217 liV~~G~~v~~dqpL 231 (289)
T 1vf5_C 217 LIVSEGQAVKAGEAL 231 (289)
T ss_dssp CCCCTTCCCTTSCCC
T ss_pred EEEECCCEEECCCCC
T ss_conf 887079768569855
No 112
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=24.77 E-value=33 Score=14.27 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=14.1
Q ss_pred EECCCCCEEECCEEEEEEC
Q ss_conf 0012442010434899973
Q gi|254780267|r 111 FVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 111 ~V~vGd~Vk~G~~l~iiEA 129 (171)
+++.|+.|++|++|+.|+.
T Consensus 76 ~~~dG~~v~~g~~il~i~G 94 (284)
T 1qpo_A 76 RVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp ECCTTCEECTTCEEEEEEE
T ss_pred ECCCCCEEECCCEEEEEEE
T ss_conf 8288999864867999998
No 113
>1uwf_A FIMH protein, FIMH; bacterial adhesin, carbohydrate recognition, adherence to mammalian cells, IG-variable fold, cell adhesion; HET: DEG; 1.69A {Escherichia coli} SCOP: b.2.3.2 PDB: 2vco_A* 1tr7_B*
Probab=23.52 E-value=35 Score=14.13 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=26.0
Q ss_pred ECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEE
Q ss_conf 0462567740367641000124420104348999737726
Q gi|254780267|r 94 SPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTM 133 (171)
Q Consensus 94 SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~ 133 (171)
=|++=.+|+.|.+.+. |=.|++||.|+.|+.-|..
T Consensus 101 ~p~p~klYLt~~~~ag-----gV~I~~Gd~iatl~~~qt~ 135 (158)
T 1uwf_A 101 KPWPVALYLTPVSSAG-----GVAIKAGSLIAVLILRQTN 135 (158)
T ss_dssp EECCEEEEEEECTTCC-----EEEECTTCEEEEEEEEEEE
T ss_pred CCEEEEEEEEECCCCC-----CEEEECCCEEEEEEEEECC
T ss_conf 5202699998658988-----6698559889999999516
No 114
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A
Probab=23.35 E-value=35 Score=14.10 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=31.8
Q ss_pred EEECCCEEEEEECCCCCCCEECCCCCEEECCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 87046256774036764100012442010434899973772689998998199
Q gi|254780267|r 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKV 144 (171)
Q Consensus 92 I~SPmvGtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEAMKm~n~I~a~~~G~I 144 (171)
++.-|- +=|++|.|..+.++-.+..++.|-.++++++ +|....+|++
T Consensus 82 vT~~l~-v~fl~p~~~G~~l~~~a~v~~~gr~~~~~~~-----~v~~~~~~~l 128 (148)
T 3f5o_A 82 VSVDMN-ITYMSPAKLGEDIVITAHVLKQGKTLAFTSV-----DLTNKATGKL 128 (148)
T ss_dssp EEEEEE-EEECSCCBTTCEEEEEEEEEEECSSEEEEEE-----EEEETTTCCE
T ss_pred EEEEEE-EEEECCCCCCCEEEEEEEEEEECCCEEEEEE-----EEEECCCCEE
T ss_conf 766688-8997357899999999999995898999999-----9999999989
No 115
>2pim_A Phenylacetic acid degradation-related protein; thioesterase superfamily, phenylacetic acid degradation-RELA protein; 2.20A {Ralstonia eutropha JMP134}
Probab=22.21 E-value=37 Score=13.97 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 56774036764100012442010434899973
Q gi|254780267|r 98 GTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 98 Gtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-+-|++|.|..+ ++-.|.-++.|..++++++
T Consensus 89 ~i~fl~p~~~g~-l~a~~~v~~~Gr~~~~~~~ 119 (141)
T 2pim_A 89 NLSFLRPAQAGL-LRGRARLERRGRNVCNVVG 119 (141)
T ss_dssp EEEECSCCCSEE-EEEEEEEEEECSSEEEEEE
T ss_pred EEEEECCCCCCE-EEEEEEEEEECCCEEEEEE
T ss_conf 789975788988-9999999993898999999
No 116
>3f1t_A Uncharacterized protein Q9I3C8_pseae; PAR319A, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Pseudomonas aeruginosa}
Probab=22.17 E-value=37 Score=13.96 Aligned_cols=32 Identities=3% Similarity=0.034 Sum_probs=24.5
Q ss_pred EEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 56774036764100012442010434899973
Q gi|254780267|r 98 GTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 98 Gtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-+=|++|.+......-.+..++.|..++++++
T Consensus 87 ~i~flrp~~~g~~l~a~a~v~~~gr~~~~~~~ 118 (148)
T 3f1t_A 87 RIDYMHPAEPHKDVYGFAECYRVTPNVIFTRG 118 (148)
T ss_dssp EEEECSCCCTTSCEEEEEEEEEECSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEEEEEECCCEEEEEE
T ss_conf 89999705899759999999994896999999
No 117
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=21.44 E-value=38 Score=13.88 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=9.0
Q ss_pred CCEECCCCCEEECC
Q ss_conf 10001244201043
Q gi|254780267|r 109 DPFVNKGNLVVEGQ 122 (171)
Q Consensus 109 ~~~V~vGd~Vk~G~ 122 (171)
|.||+.||+|+...
T Consensus 193 P~FI~~Gd~IkV~T 206 (215)
T 1yby_A 193 PLFVNKGDIIRIDT 206 (215)
T ss_dssp ETTCCTTCEEEEET
T ss_pred CCCCCCCCEEEEEC
T ss_conf 88327999999989
No 118
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=20.73 E-value=40 Score=13.78 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCCEECCCCCEEECCEEEEEEC
Q ss_conf 56774036764100012442010434899973
Q gi|254780267|r 98 GTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129 (171)
Q Consensus 98 Gtfy~~psP~~~~~V~vGd~Vk~G~~l~iiEA 129 (171)
-+=|++|.+...++.-++..++.|..++++|+
T Consensus 104 ~i~flrp~~~g~~l~a~a~v~~~Gr~~~~~e~ 135 (159)
T 2qwz_A 104 SLDFMRKPESGRDLLGQARLLKLGRTLAVGDI 135 (159)
T ss_dssp EEEECSCCCTTSCEEEEEEEEEECSSEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEEECCCEEEEEE
T ss_conf 00363155358647999999995885999999
Done!