RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin
carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus
str. psy62]
         (171 letters)



>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
          Length = 140

 Score =  110 bits (277), Expect = 1e-25
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 13  IRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTID 72
           I+ L  ++ E++ TE E+  +   +RL R           +    ++ S     P+++  
Sbjct: 1   IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQDVPAPAPIEASSPSAAAAQPAASAP 60

Query: 73  NTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKT 132
              P +             VTSPMVGT Y        PFV  G+ V  GQTL IIEAMK 
Sbjct: 61  APAPAA-------AAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKM 106

Query: 133 MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166
            N I AP  G V++I VK+G  VEYGD L V+E 
Sbjct: 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140


>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
           carrier protein (BCCP) domain is present in all
           biotin-dependent enzymes, such as acetyl-CoA
           carboxylase, pyruvate carboxylase, propionyl-CoA
           carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
           carboxylase, oxaloacetate decarboxylase,
           methylmalonyl-CoA decarboxylase, transcarboxylase and
           urea amidolyase. This domain functions in transferring
           CO2 from one subsite to another, allowing carboxylation,
           decarboxylation, or transcarboxylation. During this
           process, biotin is covalently attached to a specific
           lysine.
          Length = 67

 Score = 90.6 bits (226), Expect = 2e-19
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 91  TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK 150
            VT+PM GT            V +G+ V  GQ L ++EAMK  N + AP +G V++I VK
Sbjct: 1   EVTAPMPGTVV-------KVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK 53

Query: 151 DGQSVEYGDALLVL 164
           +G  VE G  L+V+
Sbjct: 54  EGDQVEAGQLLVVI 67



 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
            + AP  G V  + VK+G  VE G  L VLE
Sbjct: 1   EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31


>gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family
           covers two Prosite entries, the conserved lysine residue
           binds biotin in one group and lipoic acid in the other.
           Note that the model may not recognize the Glycine
           cleavage system H proteins.
          Length = 73

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 90  HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINV 149
             + SPM+G +       ++  V  G+ V  GQ L  +EAMK    I AP +G V++I V
Sbjct: 1   TEIKSPMIGESV--KEGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILV 58

Query: 150 KDGQSVEYGDALLVL 164
           K+G +VE GD L  +
Sbjct: 59  KEGDTVEVGDPLAKI 73



 Score = 25.3 bits (56), Expect = 9.3
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 134 NHIVAPCSGKV-----QDINVKDGQSVEYGDALLVLE 165
             I +P  G+       +  VK G  V+ G  L  +E
Sbjct: 1   TEIKSPMIGESVKEGTAEWLVKVGDKVKAGQVLCEVE 37


>gnl|CDD|34383 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
           [Lipid metabolism].
          Length = 645

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 84  LSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGK 143
           ++  +   + +PM GT    +       V +G  V  G  L+++EAMK  N + AP  G 
Sbjct: 570 VAAASSGELLAPMPGTVVSVA-------VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGV 622

Query: 144 VQDINVKDGQSVEYGDALLVLE 165
           V  + V +G  V  G  L+  E
Sbjct: 623 VAKLAVAEGDQVAVGTVLVEFE 644


>gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and
            conversion].
          Length = 1149

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 86   PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQ 145
            P N   + +PM G          +  V KG+ V +G  L +IEAMK    I AP  G V+
Sbjct: 1076 PGNPGHIGAPMPGVV-------VEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVK 1128

Query: 146  DINVKDGQSVEYGDALLVLEK 166
            ++ VKDG  ++ GD L+V+E+
Sbjct: 1129 EVLVKDGDQIDGGDLLVVVEE 1149


>gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production
            and conversion].
          Length = 1176

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 82   PLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCS 141
            P   P     + +PM GT         +  V +G  V +GQ L ++ AMK    I +P +
Sbjct: 1099 PKADPGVKGHIGAPMPGTVI-------EIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHA 1151

Query: 142  GKVQDINVKDGQSVEYGDALLVLE 165
            G V+ ++V  G  VE GD ++ LE
Sbjct: 1152 GTVKKVHVVQGTKVEGGDLIVELE 1175


>gnl|CDD|35459 KOG0238, KOG0238, KOG0238, 3-Methylcrotonyl-CoA carboxylase,
           biotin-containing subunit/Propionyl-CoA carboxylase,
           alpha chain/Acetyl-CoA carboxylase, biotin carboxylase
           subunit [Lipid transport and metabolism, Amino acid
           transport and metabolism].
          Length = 670

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 73  NTPPESDLIPLLSP---DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEA 129
              P   L P  S    D    + +PM G             V  G+ V EGQ L+++ A
Sbjct: 582 EVLPPKYLSPQSSETKEDGSGVIVAPMPGII-------EKVLVKPGDKVKEGQELVVLIA 634

Query: 130 MKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
           MK  + + AP  G V+D+  K G +V  G  L+  E
Sbjct: 635 MKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670


>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
           present in biotin-dependent carboxylases/decarboxylases,
           the dihydrolipoyl acyltransferase component (E2) of
           2-oxo acid dehydrogenases, and the H-protein of the
           glycine cleavage system (GCS). These domains transport
           CO2, acyl, or methylamine, respectively, between
           components of the complex/protein via a biotinyl or
           lipoyl group, which is covalently attached to a highly
           conserved lysine residue.
          Length = 73

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164
               G+ V +G  L  IEAMK  + + AP SG V+ + VK+G  VE    L+ +
Sbjct: 20  LKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73


>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
           acyltransferase component (E2) of 2-oxo acid
           dehydrogenases. 2-oxo acid dehydrogenase multienzyme
           complexes, like pyruvate dehydrogenase (PDH),
           2-oxoglutarate dehydrogenase (OGDH) and branched-chain
           2-oxo acid dehydrogenase (BCDH), contain at least three
           different enzymes, 2-oxo acid dehydrogenase (E1),
           dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
           dehydrogenase (E3) and play a key role in redox
           regulation. E2, the central component of the complex,
           catalyzes the transfer of the acyl group of CoA from E1
           to E3 via reductive acetylation of a lipoyl group
           covalently attached to a lysine residue.
          Length = 74

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164
            V +G+ V EG  L  +E  K    + AP +G +  I V++G +V  G  + V+
Sbjct: 21  LVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74



 Score = 28.9 bits (66), Expect = 0.75
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
            G + +  VK+G SVE GD L  +E
Sbjct: 14  EGTIVEWLVKEGDSVEEGDVLAEVE 38


>gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide acyltransferase (E2) component, and
           related enzymes [Energy production and conversion].
          Length = 404

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
               G+ V EG  L+ +E  K    + AP +G +  I V++G +V  G  +  +E+ G 
Sbjct: 23  LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81


>gnl|CDD|109580 pfam00529, HlyD, HlyD family secretion protein. 
          Length = 304

 Score = 35.5 bits (82), Expect = 0.007
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167
            +    SG V  I VK+G  V+ GD L+ L+ T
Sbjct: 4   EVQPQVSGIVIRILVKEGDRVKAGDVLVRLDPT 36


>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
           H-proteins are part of the glycine cleavage system (GCS)
           found in bacteria, archea and the mitochondria of
           eukaryotes. GCS is a multienzyme complex consisting of 4
           different components (P-, H-, T- and L-proteins) which
           catalyzes the oxidative cleavage of glycine. The
           H-protein shuttles the methylamine group of glycine from
           the P-protein (glycine dehydrogenase) to the T-protein
           (aminomethyltransferase) via a lipoyl group, attached to
           a completely conserved lysine residue.
          Length = 96

 Score = 33.7 bits (78), Expect = 0.027
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
               G  V +G     +E++K  + + +P SG+V ++N
Sbjct: 36  LPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVN 73


>gnl|CDD|31754 COG1566, EmrA, Multidrug resistance efflux pump [Defense
           mechanisms].
          Length = 352

 Score = 33.4 bits (76), Expect = 0.032
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167
            I    SG+V ++NVKD Q V+ GD L  ++  
Sbjct: 55  PIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87



 Score = 25.3 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLVL 164
           I AP  G V +++V+ GQ V  G  L+ L
Sbjct: 211 IRAPVDGYVTNLSVRVGQYVSAGTPLMAL 239


>gnl|CDD|30855 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding)
           [Amino acid transport and metabolism].
          Length = 131

 Score = 32.9 bits (75), Expect = 0.051
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 99  TAYLASSPGSDPFV---NKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
           T Y     G   FV     G  V  G++L ++E++K  + + AP SG+V ++N
Sbjct: 31  TDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83


>gnl|CDD|145006 pfam01635, Corona_M, Coronavirus M matrix/glycoprotein.  This
           family consists of various coronavirus matrix proteins
           which are transmembrane glycoproteins. The M protein or
           E1 glycoprotein is The coronavirus M protein is
           implicated in virus assembly. The E1 viral membrane
           protein is required for formation of the viral envelope
           and is transported via the Golgi complex.
          Length = 221

 Score = 31.9 bits (73), Expect = 0.086
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 76  PESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNH 135
           PE++ + L  P    TV  P+          G  P + +G L +EGQ L     +  +  
Sbjct: 112 PETNAL-LNIPLLGRTVVRPIEE-----DPTGVTPTILRGVLYMEGQKLARGCDVDDLPK 165

Query: 136 IVAPCSGKVQDINV-KDGQSVEYGD----ALLVLEKTGDNK 171
            V     K     V K G+SV  G+    A+ V  K G+ +
Sbjct: 166 YVTVA--KPSTTIVYKRGKSVNSGNKSGFAVYVRYKHGNYR 204


>gnl|CDD|35589 KOG0368, KOG0368, KOG0368, Acetyl-CoA carboxylase [Lipid transport
           and metabolism].
          Length = 2196

 Score = 31.9 bits (72), Expect = 0.093
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
           V  G  V  GQ    IE MK +  +VA   G++Q I  ++G ++E G  L  L 
Sbjct: 701 VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI-KQEGDAIEAGSVLAKLT 753


>gnl|CDD|38583 KOG3373, KOG3373, KOG3373, Glycine cleavage system H protein
           (lipoate-binding) [Amino acid transport and metabolism].
          Length = 172

 Score = 28.4 bits (63), Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQS 154
           G  V +G +   +E++K  + I +P SG+V +IN K  ++
Sbjct: 91  GTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130


>gnl|CDD|36847 KOG1634, KOG1634, KOG1634, Predicted transcription factor DATF1,
           contains PHD and TFS2M domains [Transcription].
          Length = 778

 Score = 27.4 bits (60), Expect = 2.1
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 53  SEDNKNNHSLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMV 97
           S+   ++  L   P   +  +      L P+L P  +   T+PMV
Sbjct: 670 SDSVPSSRHLKSSPGGGSP-SFHFPPHLPPILPPPGFGFATNPMV 713


>gnl|CDD|110591 pfam01597, GCV_H, Glycine cleavage H-protein.  This is a family of
           glycine cleavage H-proteins, part of the glycine
           cleavage multienzyme complex (GCV) found in bacteria and
           the mitochondria of eukaryotes. GCV catalyses the
           catabolism of glycine in eukaryotes. A lipoyl group is
           attached to a completely conserved lysine residue. The H
           protein shuttles the methylamine group of glycine from
           the P protein to the T protein.
          Length = 122

 Score = 27.3 bits (61), Expect = 2.1
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 97  VG-TAYLASSPGSDPFVN---KGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK 150
           VG T +     G   FV     G  V +G++L  +E++K  + + AP SG+V ++N K
Sbjct: 20  VGITDFAQEELGDLVFVELPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEK 77


>gnl|CDD|31606 COG1416, COG1416, Uncharacterized conserved protein [Function
          unknown].
          Length = 112

 Score = 26.4 bits (58), Expect = 3.8
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 3  DKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDT 47
          D++ K+N+  + NL N+L +    E+E+   G  I  L       
Sbjct: 11 DEESKVNMV-LGNLTNLLEDDPSVEIEVVAHGPAIAFLSEKANIA 54


>gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
          Length = 1364

 Score = 26.4 bits (59), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 98   GTAYLASSPGSDPFVNKGNLVVEGQTL--LIIEAMKT 132
               YLA+ PG+    + G ++ EG TL  LI E  ++
Sbjct: 1093 AKPYLAT-PGATVHGHYGEILYEGDTLVTLIYEKSRS 1128


>gnl|CDD|38047 KOG2836, KOG2836, KOG2836, Protein tyrosine phosphatase IVA1
          [Signal transduction mechanisms].
          Length = 173

 Score = 26.5 bits (58), Expect = 4.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 28 VEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLIPLL 84
          VEI    MR  +  +P   T+  +  E  K   + V      T D TP E + I +L
Sbjct: 10 VEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVL 66


>gnl|CDD|33251 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
           transduction mechanisms].
          Length = 382

 Score = 25.7 bits (56), Expect = 5.9
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 14  RNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDN 73
           R L  I+ + +L +    +   R+R LR P    +                  P  T+  
Sbjct: 286 RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMT---------------TPVVTVRP 330

Query: 74  TPPESDLIPLLSPDNYHTV 92
             P  +L+P L+ +  H +
Sbjct: 331 DTPAVELVPRLADEGLHAL 349


>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
           related protein. This family includes Hydrogen
           expression/formation protein HypE, AIR synthases, FGAM
           (formylglycinamidine ribonucleotide) synthase and
           Selenophosphate synthetase (SelD). The N-terminal domain
           of AIR synthase forms the dimer interface of the
           protein, and is suggested as a putative ATP binding
           domain..
          Length = 222

 Score = 25.8 bits (57), Expect = 6.3
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 118 VVEGQTLLIIEAMKTMNH---IVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
           +V G T     +  TM H   +     G V+   V D      GD L++  
Sbjct: 75  IVGGHT---SVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG 122


>gnl|CDD|145688 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase.  This
           is a family of phosphatidylserine decarboxylases,
           EC:4.1.1.65. These enzymes catalyse the reaction:
           Phosphatidyl-L-serine <=> phosphatidylethanolamine +
           CO2. Phosphatidylserine decarboxylase plays a central
           role in the biosynthesis of aminophospholipids by
           converting phosphatidylserine to
           phosphatidylethanolamine.
          Length = 201

 Score = 25.3 bits (56), Expect = 7.9
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 23/94 (24%)

Query: 84  LSPDNYHTVTSPMVGTA--------------YLASSPGSDPFV-NKGNLVV----EGQTL 124
           LSP +YH   +P+ GT                LA S   + F  N+  ++V     G+  
Sbjct: 76  LSPFDYHRNHAPVDGTVKEVRHIPGKLYPVNPLALSKIPNLFAENERVVIVIETKFGKVA 135

Query: 125 LIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYG 158
           ++      +  IV     K +   VK G   E G
Sbjct: 136 VVQVGALNVGSIV--LYFKEEGDEVKKGD--ELG 165


>gnl|CDD|35462 KOG0241, KOG0241, KOG0241, Kinesin-like protein [Cytoskeleton].
          Length = 1714

 Score = 25.4 bits (55), Expect = 9.3
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 41   RSPQKDTVTNYY--SEDNKNNHSLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVG 98
            RSP   ++T+ Y     +    S +  P S + D    ++      +  +  ++      
Sbjct: 1505 RSPTTSSITSGYFSHSASNATLSDMVVPSSDSSDQLAIQT-KDADSTEHSTPSLVHDGRP 1563

Query: 99   TAYLASSPGSDPFVNKGNLVVE 120
            ++    +      V    +VVE
Sbjct: 1564 SSDKELTEVEKGLVKDKIIVVE 1585


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.311    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,947,494
Number of extensions: 95733
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 31
Length of query: 171
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,383,754
Effective search space: 368235336
Effective search space used: 368235336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.6 bits)