RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin
carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus
str. psy62]
(171 letters)
>gnl|CDD|180522 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 152 bits (386), Expect = 5e-38
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 8 INLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPP 67
+++ I+ L +++E+ ++E EI +R+ R+ + P
Sbjct: 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQAAAA---PVAAAPA 57
Query: 68 SSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLII 127
++ P + + H VTSPMVGT Y A SP + PFV G+ V EGQTL II
Sbjct: 58 AAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCII 117
Query: 128 EAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
EAMK MN I A SG V +I V++GQ VE+G L V+E
Sbjct: 118 EAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155
>gnl|CDD|129622 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. The gene name is accB or fabE.
Length = 156
Score = 99.5 bits (248), Expect = 4e-22
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 8 INLTLIRNLANILNETNLTEVEIDNDGMRIRLLR-SPQKDTVTNYYSEDNKNNHSLVGFP 66
+N+ I+ L ++ E+ +TE+E+ + +RL + + +
Sbjct: 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKSAVQQAAAPVPAQVPAAPS 60
Query: 67 PSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLI 126
+ P + H V SPMVGT Y A SP + PFV G+ V +GQ + I
Sbjct: 61 AQAPAPAVCAP---APAKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCI 117
Query: 127 IEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+EAMK MN I A +GKV +I V++GQ VEYG L+V+E
Sbjct: 118 VEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156
>gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 94.9 bits (237), Expect = 1e-20
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 27 EVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLIPLLSP 86
+VE+D + +++ + Y D +V + P S
Sbjct: 469 KVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIVVGGRPRASAPGA---- 524
Query: 87 DNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQD 146
VTSPM GT V +G+ V G T+L++EAMK N I AP G V++
Sbjct: 525 -----VTSPMPGTVV-------KVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKE 572
Query: 147 INVKDGQSVEYGDALLVLEK 166
I VK+G V GD L+ +E
Sbjct: 573 ILVKEGDRVNPGDVLMEIEP 592
>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
Length = 80
Score = 74.7 bits (184), Expect = 1e-14
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINV 149
H + SP+ GT Y SP + P+V G+ V G + +IE MK + A +G+V + V
Sbjct: 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLV 63
Query: 150 KDGQSVEYGDALLVLE 165
+DG+ VE G L +E
Sbjct: 64 EDGEPVEAGQVLARIE 79
>gnl|CDD|178564 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 73.3 bits (180), Expect = 3e-14
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 66 PPSSTIDNTPPESDLIPLLSPDNYH-TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTL 124
P+S+ TP P +P + H + SPM GT Y + +PG PFV G+ V +GQ +
Sbjct: 175 APASSPPPTPASPP--PAKAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVV 232
Query: 125 LIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
IIEAMK MN I A SG + +I +DG+ V L V+E
Sbjct: 233 CIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273
>gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 71.3 bits (176), Expect = 1e-13
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 103 ASSPGS--DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDA 160
A PGS V +G+ V G L +IEAMK I AP G V+ + VK G VE GD
Sbjct: 1081 APMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDL 1140
Query: 161 LLVLEK 166
L+ LE
Sbjct: 1141 LVELEP 1146
Score = 40.1 bits (95), Expect = 3e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
H+ AP G V + VK+G V+ GD L V+E
Sbjct: 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108
>gnl|CDD|184472 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 63.8 bits (156), Expect = 2e-11
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 74 TPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTM 133
P + + VT+P+ G + V +G V EG LLI+EAMK
Sbjct: 509 AAPAAAAAAAPAAAAGEPVTAPLAGNIFKV-------IVTEGQTVAEGDVLLILEAMKME 561
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164
I A +G V+ I VK+G +V GD LL L
Sbjct: 562 TEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592
Score = 37.2 bits (87), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ AP +G + + V +GQ+V GD LL+LE
Sbjct: 527 VTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556
>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea.
Length = 1201
Score = 62.0 bits (151), Expect = 8e-11
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 74 TPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTM 133
E+DL P+ V S G + V G+ V GQ L+I+EAMK
Sbjct: 1122 PEEEADL-----PEGAEQVESEYAGNFW-------KVLVEVGDRVEAGQPLVILEAMKME 1169
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ AP +GKV I + G V+ GD + VLE
Sbjct: 1170 MPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|180616 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 60.6 bits (147), Expect = 2e-10
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK 150
+ SPM GT V G+ V E Q LLI+EAMK N IVA +G V I+V
Sbjct: 63 AMPSPMPGTILKV-------LVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVT 115
Query: 151 DGQSVEYGDALL 162
GQ V GD L+
Sbjct: 116 PGQVVNPGDGLI 127
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis.
Length = 1143
Score = 54.8 bits (132), Expect = 1e-08
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQ 145
P N V +PM G + V+ G V +G L+++EAMK I AP G ++
Sbjct: 1071 PGNPAHVGAPMPGVI-------IEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIK 1123
Query: 146 DINVKDGQSVEYGDALLVLE 165
++ VK G+ ++ D LLVLE
Sbjct: 1124 EVLVKAGEQIDAKDLLLVLE 1143
>gnl|CDD|162205 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane.
Length = 582
Score = 53.6 bits (129), Expect = 2e-08
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK 150
VT+P+ G+ V++G V EG+ LLI+EAMK I A +G V++I VK
Sbjct: 519 PVTAPIAGSIVKVK-------VSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVK 571
Query: 151 DGQSVEYGDAL 161
G +V G L
Sbjct: 572 VGDAVSVGQVL 582
Score = 34.4 bits (79), Expect = 0.017
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ AP +G + + V +GQ+V G+ LL+LE
Sbjct: 520 VTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549
>gnl|CDD|168146 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 52.6 bits (126), Expect = 6e-08
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 66 PPSSTIDNTP-PESDLIPLLSPDNY--HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQ 122
P+ + + P P + P +P + + VT+PM G V +G V GQ
Sbjct: 58 APAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMPGKILRI-------LVREGQQVKVGQ 110
Query: 123 TLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164
LLI+EAMK N I AP G V+ I VK+G +V+ G L+ L
Sbjct: 111 GLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152
Score = 32.5 bits (74), Expect = 0.054
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
N + AP GK+ I V++GQ V+ G LL+LE
Sbjct: 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 70
Score = 46.7 bits (111), Expect = 3e-06
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V G+ V EGQ ++I+E+MK IVA +G V+ INV++G V GD LL +E
Sbjct: 17 VKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70
Score = 30.5 bits (69), Expect = 0.24
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
M + A +G V I VK G +VE G +++LE
Sbjct: 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33
>gnl|CDD|162309 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
dihydrolipoamide acetyltransferase. The seed for this
model includes mitochondrial and Gram-negative bacterial
forms. Mycobacterial candidates are highly derived,
differ in having and extra copy of the lipoyl-binding
domain at the N-terminus. They score below the trusted
cutoff, but above the noise cutoff and above all
examples of dihydrolipoamide acetyltransferase.
Length = 403
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 113 NKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDN 170
G+ V + ++ IE K + + +P G +Q+I K+G +VE G L +LE+ D
Sbjct: 23 KVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80
>gnl|CDD|183339 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 41.7 bits (99), Expect = 1e-04
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
V G+ V EGQ L +E K I +P +G V + V++G V G + V+E+ G+
Sbjct: 23 LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81
>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Provisional.
Length = 71
Score = 40.6 bits (95), Expect = 2e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVL 164
VN+G+ + +G TL+++E+MK ++A +G V ++V G ++ GD + V+
Sbjct: 18 VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70
>gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 39.8 bits (94), Expect = 4e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V G+ V E Q+L+ +E K I +P +G V++I VK G V G L+V+E
Sbjct: 139 LVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193
Score = 37.9 bits (89), Expect = 0.002
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
V +G+ V E Q L+ +E K I +P +G V++I VK G +V G L V+E G
Sbjct: 22 LVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80
>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model.
Length = 546
Score = 39.9 bits (93), Expect = 4e-04
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V G+ V GQ+L+ +E+ K + + +G +++I VK G ++ G + LE
Sbjct: 21 VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V+ G+ V GQ +L+IEAMK I AP +G V +I + G V G L+ +E
Sbjct: 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594
>gnl|CDD|179447 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 37.3 bits (87), Expect = 0.002
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 33/85 (38%)
Query: 110 PFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN--------------------- 148
P V G+LVV G L + AP SG+V+ ++
Sbjct: 902 PTVKVGDLVVAGDEL--------APGVPAPESGEVEAVSGGSVTLRLGRPYRVSPGAVLH 953
Query: 149 VKDGQSVEYGD--ALLVLE--KTGD 169
V+DG V+ GD ALLV E KTGD
Sbjct: 954 VRDGDLVQRGDNLALLVFERAKTGD 978
>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 36.5 bits (85), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V G+ V Q+L+ +E K + +P +G V++I VK G VE G +++ E
Sbjct: 21 LVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75
Score = 35.4 bits (82), Expect = 0.009
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
V G+ V Q+L+ +E K + AP +G V++I V G V G ++V E G+
Sbjct: 125 VKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGE 182
Score = 33.4 bits (77), Expect = 0.027
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168
V G+ V Q+L+ +E K + AP +G V++I V G V+ G ++ E G
Sbjct: 226 VKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282
>gnl|CDD|180214 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 34.8 bits (81), Expect = 0.012
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161
G+ V + L+ IE K + + AP +G + +I ++G +V G L
Sbjct: 23 HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVL 73
>gnl|CDD|178556 PLN02973, PLN02973, beta-fructofuranosidase.
Length = 571
Score = 33.5 bits (76), Expect = 0.027
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 17 ANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPP 76
NI N +L+ ++ +D +LL P+ + S D ++ L G P DN
Sbjct: 14 GNIKNVDSLSTLDDIDDIDFAKLLEKPRPLNIDRLRSLDERSLTELTGSPQLRNADNASR 73
Query: 77 ESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDP 110
+PD+ V SP G ++P S P
Sbjct: 74 --------APDHADYVISPSFGRRSGFNTPRSQP 99
>gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional.
Length = 346
Score = 33.1 bits (76), Expect = 0.041
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
H+ + G++ ++ V + Q+V+ GD L ++
Sbjct: 50 HVASEVGGRIVELAVTENQAVKKGDLLFRID 80
>gnl|CDD|162152 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A).
Length = 334
Score = 32.5 bits (74), Expect = 0.056
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLVLEKT 167
+ + SG V ++NV D V+ GD L+ L+ T
Sbjct: 45 VSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins.
Length = 423
Score = 31.9 bits (73), Expect = 0.076
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 142 GKVQDINVKDGQSVEYGDALLVLEKTGDN 170
G V++I V++G V+ G L+ L+ T
Sbjct: 52 GIVREILVREGDRVKAGQVLVELDATDVE 80
>gnl|CDD|132121 TIGR03077, not_gcvH, glycine cleavage protein H-like protein,
Chlamydial. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed the Chlamydial
GcvH homolog, so far always seen as part of a two-gene
operon, downstream of a member of the uncharacterized
protein family TIGR03076. The function of this protein
is unknown.
Length = 110
Score = 31.8 bits (72), Expect = 0.10
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINV 149
G+ EG+ L+I+E+ K+ +++P SG+V ++N+
Sbjct: 41 GSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNI 75
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 31.6 bits (71), Expect = 0.11
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
G V + + IE K I +P SG +Q+ VK+G +VE G + ++ K+ D
Sbjct: 116 GERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSED 170
>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.8 bits (70), Expect = 0.20
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168
G+ V E + + IIE K I AP SG + I ++G +VE G L ++ G
Sbjct: 69 GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122
>gnl|CDD|167014 PRK00624, PRK00624, glycine cleavage system protein H; Provisional.
Length = 114
Score = 30.6 bits (69), Expect = 0.21
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
G+ EG+ L+I+E+ K+ +++P SG+V ++N
Sbjct: 43 GSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76
>gnl|CDD|162505 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer
membrane.
Length = 322
Score = 30.0 bits (68), Expect = 0.36
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
+GK+ I+V++GQ V+ G L L+
Sbjct: 34 AGKITKISVREGQKVKKGQVLARLD 58
>gnl|CDD|147834 pfam05896, NQRA, Na(+)-translocating NADH-quinone reductase subunit
A (NQRA). This family consists of several bacterial
Na(+)-translocating NADH-quinone reductase subunit A
(NQRA) proteins. The Na(+)-translocating NADH:
ubiquinone oxidoreductase (Na(+)-NQR) generates an
electrochemical Na(+) potential driven by aerobic
respiration.
Length = 257
Score = 29.4 bits (67), Expect = 0.49
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 19/83 (22%)
Query: 67 PSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLI 126
P I++ P + LL ++Y + M+ V +G+ V GQ L
Sbjct: 16 PEQEIEDGPA-VRTVALL-GEDYVGMKPKML--------------VKEGDKVKAGQPLF- 58
Query: 127 IEAMKTMN-HIVAPCSGKVQDIN 148
E K AP SG V IN
Sbjct: 59 -EDKKNPGVKFTAPASGTVVAIN 80
>gnl|CDD|150579 pfam09923, DUF2155, Uncharacterized protein conserved in bacteria
(DUF2155). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 29.1 bits (66), Expect = 0.58
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLEK 166
+G+ D+ +K G++ +G + L +
Sbjct: 10 TGRTTDLELKVGETARFGALQVTLRE 35
>gnl|CDD|163506 TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a propeptide region
related to nitrile hydratase. We designate the class of
bacteriocin as Nitrile Hydratase Propeptide Microcin, or
NHPM. This family, therefore, is designated as NHPM
bacteriocin system secretion protein. Some but not all
NHPM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters.
Length = 421
Score = 29.0 bits (65), Expect = 0.65
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168
IV+ SG+V ++N GQ V G L LE
Sbjct: 256 IVSQHSGRVIELNYTPGQLVAAGAPLASLEVED 288
>gnl|CDD|185374 PRK15477, PRK15477, oxaloacetate decarboxylase subunit beta;
Provisional.
Length = 433
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 94 SPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130
+P++G+A +++ P + NK L + Q L++ AM
Sbjct: 373 NPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAM 409
>gnl|CDD|185372 PRK15475, PRK15475, oxaloacetate decarboxylase subunit beta;
Provisional.
Length = 433
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 94 SPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130
+P++G+A +++ P + NK L + Q L++ AM
Sbjct: 373 NPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAM 409
>gnl|CDD|183742 PRK12784, PRK12784, hypothetical protein; Provisional.
Length = 84
Score = 26.8 bits (59), Expect = 2.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 111 FVNKGNLVVEGQTLLIIEAMK-TMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
FVN+ + V E + L++I + + SG ++ +NV GQ + L+ LE
Sbjct: 20 FVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75
Score = 25.3 bits (55), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 130 MKT-MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEK 166
MKT M I + GKV++I V + V + L+++ K
Sbjct: 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRK 38
>gnl|CDD|162617 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C
subunit. The six subunit complex RnfABCDGE in
Rhodobacter capsulatus encodes an apparent NADH
oxidoreductase responsible for electron transport to
nitrogenase, necessary for nitrogen fixation. A closely
related complex in E. coli, RsxABCDGE (Reducer of SoxR),
reduces the 2Fe-2S-containing superoxide sensor SoxR,
active as a transcription factor when oxidized. This
family of putative NADH oxidoreductase complexes exists
in many of the same species as the related NQR, a
Na(+)-translocating NADH-quinone reductase, but is
distinct. This model describes the C subunit.
Length = 435
Score = 26.9 bits (60), Expect = 2.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 109 DPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDI 147
+P V G+ V++GQ + + + I AP SG V I
Sbjct: 44 EPIVKVGDKVLKGQKIAKADGFVSAP-IHAPTSGTVVAI 81
>gnl|CDD|185373 PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta;
Provisional.
Length = 433
Score = 26.9 bits (59), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 94 SPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAM 130
+P++G+A +++ P + NK L + Q L++ AM
Sbjct: 373 NPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAM 409
>gnl|CDD|179544 PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional.
Length = 259
Score = 26.1 bits (58), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 84 LSPDNYHTVTSPMVGT 99
LSP +YH + SP+ GT
Sbjct: 133 LSPSHYHRIHSPISGT 148
>gnl|CDD|184753 PRK14581, hmsF, outer membrane N-deacetylase; Provisional.
Length = 672
Score = 26.1 bits (57), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 64 GFPPSSTIDNTPPESDLIPLLSPDNY 89
G+ P + I PP D+ P+LS Y
Sbjct: 643 GYYPDNFITGEPPLKDVRPVLSSAWY 668
>gnl|CDD|180288 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 25.3 bits (56), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 72 DNTPP--ESDLIPLLSPDNYHTVTSPMVGTAYLASSPGS 108
+ PP E DL+ L SP + TAYL + GS
Sbjct: 133 QSAPPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGS 171
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.311 0.131 0.366
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,696,728
Number of extensions: 159754
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 57
Length of query: 171
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,114,577
Effective search space: 345624468
Effective search space used: 345624468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.8 bits)