RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin
carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus
str. psy62]
(171 letters)
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hammerhead structure, selenomethionine,
ligase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 97.7 bits (243), Expect = 1e-21
Identities = 38/76 (50%), Positives = 47/76 (61%)
Query: 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINV 149
H V SPMVGT Y SP + F+ G V G TL I+EAMK MN I A SG V+ I V
Sbjct: 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILV 64
Query: 150 KDGQSVEYGDALLVLE 165
+ GQ VE+ + L+V+E
Sbjct: 65 ESGQPVEFDEPLVVIE 80
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 91.2 bits (226), Expect = 1e-19
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 26 TEVEIDNDG-MRIRLLRSPQKD---TVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLI 81
E+EID + I+L + D T YY+ + + + T N P++D
Sbjct: 1016 VEIEIDKGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKAD-- 1073
Query: 82 PLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCS 141
N + + M G+ + V+ G V Q LLI EAMK I AP
Sbjct: 1074 ----KSNPSHIGAQMPGSVT-------EVKVSVGETVKANQPLLITEAMKMETTIQAPFD 1122
Query: 142 GKVQDINVKDGQSVEYGDALLVLEKTGD 169
G ++ + V +G ++ GD L+ +EK D
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIEKATD 1150
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA SAP; 2.00A
{Rhizobium etli cfn 42}
Length = 1165
Score = 88.6 bits (219), Expect = 6e-19
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQ 145
P N V +PM G FV+ G V G L+ IEAMK I A G +
Sbjct: 1092 PGNAAHVGAPMPGVIS-------RVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIA 1144
Query: 146 DINVKDGQSVEYGDALLVLE 165
++ VK G ++ D L V
Sbjct: 1145 EVLVKAGDQIDAKDLLAVYG 1164
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 86.8 bits (214), Expect = 3e-18
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 43 PQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYL 102
+ + E N S + + + P D + +PM G
Sbjct: 608 LNRAGQRQVFFELNGQLRS-ILVKDTQAMKEMHFH----PKALKDVKGQIGAPMPGKVI- 661
Query: 103 ASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALL 162
D V G V +GQ L ++ AMK + +P G V+ ++V ++E D +L
Sbjct: 662 ------DIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLIL 715
Query: 163 VLE 165
+E
Sbjct: 716 EIE 718
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 81.9 bits (202), Expect = 7e-17
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 84 LSPDNYHTVTSPMVGT--AYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNH-IVAPC 140
L PD + PM G V G V EGQ L IEAMK M + + A
Sbjct: 607 LPPDTSKMLLCPMPGLIVKVD---------VEVGQEVQEGQALCTIEAMK-MENILRAEK 656
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
G V IN G S+ D ++ E
Sbjct: 657 KGVVAKINASAGNSLAVDDVIMEFE 681
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin; NMR {Propionibacterium freudenreichiisubsp}
SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 74.1 bits (182), Expect = 2e-14
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD 151
+ +P+ GT V +G+ V GQT+L++EAMK I AP GKV+ + VK+
Sbjct: 11 IPAPLAGTVS-------KILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKE 63
Query: 152 GQSVEYGDALLVL 164
+V+ G L+ +
Sbjct: 64 RDAVQGGQGLIKI 76
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
I AP +G V I VK+G +V+ G +LVLE
Sbjct: 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP,
X-RAY diffraction, structural genomics, NPPSFA; 1.55A
{Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 69.8 bits (171), Expect = 3e-13
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 90 HTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINV 149
+ V++PM G V G+ V GQ LL++EAMK N I +P G V+ I V
Sbjct: 6 NVVSAPMPGKVL-------RVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILV 58
Query: 150 KDGQSVEYGDALLVL 164
K+G++V+ G L+ L
Sbjct: 59 KEGEAVDTGQPLIEL 73
Score = 36.3 bits (84), Expect = 0.004
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
N + AP GKV + V+ G V G LLVLE
Sbjct: 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 69.8 bits (171), Expect = 3e-13
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD 151
+ P +G + VN G+ + TL+ +E K + A +G V+++ VK
Sbjct: 5 LKVPDIGGHE--NVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62
Query: 152 GQSVEYGDALLVLEKTGD 169
G + G ++V+E G
Sbjct: 63 GDKISEGGLIVVVEAEGT 80
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 68.2 bits (167), Expect = 8e-13
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD 151
+ SP G V G V G + +E MK + + G+V+ I +
Sbjct: 8 LRSPSAGKLT-------QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRP 59
Query: 152 GQSVEYGDALLVLE 165
G +E G + LE
Sbjct: 60 GAVLEAGCVVARLE 73
Score = 36.6 bits (85), Expect = 0.003
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 134 NHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ +P +GK+ V+DG VE G + +E
Sbjct: 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, polymorphism, disease mutation,
nucleotide-binding; HET: PG4; 1.5A {Homo sapiens}
Length = 94
Score = 67.7 bits (165), Expect = 1e-12
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 88 NYHTVTSPMVGTAYLASSPG--SDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQ 145
+ M + + PG V G+ V EGQ + +IEAMK N + A +G V+
Sbjct: 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVK 74
Query: 146 DINVKDGQSVEYGDALLVLE 165
++ + G +V GD L+ LE
Sbjct: 75 SVHCQAGDTVGEGDLLVELE 94
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 67.1 bits (164), Expect = 2e-12
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGD 169
V G+ V Q+L+ +E K + AP +G V+++ V G V+ G +++ E G
Sbjct: 21 MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 66.5 bits (162), Expect = 3e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 85 SPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKV 144
S + +PM GT FV G+ V G +L+++ AMK + I +P G V
Sbjct: 10 SQETQGGPLAPMTGTIE-------KVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTV 62
Query: 145 QDINVKDGQSVEYGDALLVLEKTGDNK 171
+ + ++G L+ E+ +K
Sbjct: 63 KKVFYREGAQANRHTPLVEFEEEESDK 89
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 66.3 bits (162), Expect = 3e-12
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDN 170
V G+L+ Q L+++E+ K + +P +G V+ ++VK G ++ GDA++ LE
Sbjct: 19 LVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78
Query: 171 K 171
+
Sbjct: 79 R 79
Score = 29.7 bits (67), Expect = 0.33
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 142 GKVQDINVKDGQSVEYGDALLVLE 165
G+V ++ VK G +E L+VLE
Sbjct: 13 GEVIELLVKTGDLIEVEQGLVVLE 36
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 64.9 bits (158), Expect = 1e-11
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 91 TVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVK 150
TV+ M G + V G+ + +GQ + I+E+MK IVA SG V+++ K
Sbjct: 1 TVSIQMAGNLW-------KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKK 53
Query: 151 DGQSVEYGDALLVLEKTG 168
+G V GD LL L +
Sbjct: 54 EGDFVNEGDVLLELSNST 71
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 61.4 bits (149), Expect = 1e-10
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD 151
V P + ++ V G+ V Q+L+ +E K + AP +G V+++ V
Sbjct: 5 VNVPDIVEV-------TEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV 57
Query: 152 GQSVEYGDALLVLEKTGD 169
G V+ G +++ E G
Sbjct: 58 GDKVKTGSLIMIFEVEGA 75
Score = 31.8 bits (72), Expect = 0.080
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 133 MNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ + P +V ++ VK G V +L+ +E
Sbjct: 2 VKEVNVPDIVEVTEVMVKVGDKVAAEQSLITVE 34
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 61.3 bits (149), Expect = 1e-10
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTG 168
G V + ++ IE K + ++A G + +I +G +V G+ L L + G
Sbjct: 22 HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG 79
Score = 29.0 bits (65), Expect = 0.60
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
G V + K G++V+ + ++ +E
Sbjct: 15 DGTVATWHKKPGEAVKRDELIVDIE 39
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 61.3 bits (149), Expect = 1e-10
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+V +G+ V + ++ +++ K I + G ++ + G L+ +E
Sbjct: 25 YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE 79
Score = 27.8 bits (62), Expect = 1.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
V++ VK+G +V D++ ++
Sbjct: 18 EVTVKEWYVKEGDTVSQFDSICEVQ 42
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 54.3 bits (131), Expect = 1e-08
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
G+ VV + L+ IE K + + A G + + +G +V L L
Sbjct: 23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77
Score = 27.0 bits (60), Expect = 2.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
V + K G +V + L+ +E
Sbjct: 16 DATVATWHKKPGDAVVRDEVLVEIE 40
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 52.3 bits (125), Expect = 6e-08
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 92 VTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKD 151
+ SP G V G V G + +E MK + + G+V +
Sbjct: 20 LRSPSAGKLT-------QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRP 71
Query: 152 GQSVEYGDALLVLE 165
G +E G + LE
Sbjct: 72 GAVLEAGCVVARLE 85
Score = 34.2 bits (78), Expect = 0.018
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 126 IIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
+ E + +P +GK+ V+DG VE G + +E
Sbjct: 10 VFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 49.3 bits (117), Expect = 5e-07
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDN 170
FV G+ V E L ++ K + I +P GKV +I V +G G L+ L+ G
Sbjct: 23 FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE 82
Query: 171 K 171
Sbjct: 83 N 83
Score = 26.2 bits (57), Expect = 4.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 142 GKVQDINVKDGQSVEYGDALLVLE 165
G++ VK G V D L ++
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQ 40
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 39.8 bits (91), Expect = 3e-04
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 VNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
V G+L ++A++ ++ + A SG+++ ++V G V+ L V++
Sbjct: 11 VRPGDLQQSVLATGKLDALRKVD-VGAQVSGQLKTLSVAIGDKVKKDQLLGVID 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.5 bits (92), Expect = 3e-04
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 48/101 (47%)
Query: 11 TLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSST 70
LI+ A L+ L+R+ +++ G
Sbjct: 186 DLIKFSAETLS----------------ELIRTT--LDAEKVFTQ---------GL----- 213
Query: 71 IDNTPPESDLIPLLS-PDNYHTVTSPMVGTAYLASSPGSDP 110
+++ L P +P YL S P S P
Sbjct: 214 --------NILEWLENPS-----NTP--DKDYLLSIPISCP 239
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent
efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2;
2.80A {Cupriavidus metallidurans}
Length = 359
Score = 38.6 bits (89), Expect = 8e-04
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 135 HIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
++ P +G++ +N + G V+ GD L ++
Sbjct: 59 KVLPPLAGRIVSLNKQLGDEVKAGDVLFTID 89
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 38.0 bits (87), Expect = 0.001
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 111 FVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161
+G V G L IE K + + A G + I V++G +L
Sbjct: 24 LKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSL 74
Score = 27.9 bits (61), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 142 GKVQDINVKDGQSVEYGDALLVLE 165
G + K+G++V GDAL +E
Sbjct: 18 GNIVKWLKKEGEAVSAGDALCEIE 41
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 37.4 bits (85), Expect = 0.002
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 127 IEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
A + + +G + K+G V+ G L ++
Sbjct: 38 TNAFRIAE-VRPQVNGIILKRLFKEGSDVKAGQQLYQID 75
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport protein; 2.71A {Escherichia coli}
Length = 277
Score = 37.0 bits (84), Expect = 0.002
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 127 IEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLE 165
A + + SG + N K+G +E G +L ++
Sbjct: 17 TSAYRIAE-VRPQVSGIILKRNFKEGSDIEAGVSLYQID 54
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 31.8 bits (72), Expect = 0.085
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 141 SGKVQDINVKDGQSVEYGDALLVLE 165
SG + + K G V+ G L ++E
Sbjct: 9 SGVIVNKLFKAGDKVKKGQTLFIIE 33
Score = 30.3 bits (68), Expect = 0.24
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 136 IVAPCSGKVQDINVKDGQSVEYGDALLV 163
I AP G + D V G V LV
Sbjct: 70 IKAPFDGTIGDALVNIGDYVSASTTELV 97
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM
biosynthesis, lyase; 1.84A {Homo sapiens} SCOP:
c.113.1.1
Length = 286
Score = 30.2 bits (67), Expect = 0.27
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 30 IDNDGMRIRLLRSPQKDTVTN--YYSEDNKNNHSLVGFPPSSTIDNTPPESDLIP--LLS 85
I+ M++ LL+ ++D Y E P + L
Sbjct: 17 IEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIP---VLSFEFLSLPSFSEKLSH 73
Query: 86 PDNYHTV--TSP 95
P++Y + TSP
Sbjct: 74 PEDYGGLIFTSP 85
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: MSE; 2.00A {Vibrio fischeri ES114}
Length = 184
Score = 29.1 bits (64), Expect = 0.49
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 27 EVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTPPES 78
+V + + ++RL++S T+ NY+ N H L + P + PE
Sbjct: 2 DVSFEFEHYQVRLIKSSDAVTIANYFMR---NRHHLAPWEPKRSHAFFTPEG 50
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.8 bits (61), Expect = 1.5
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 16 LANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLVGFPPSSTIDNTP 75
L + E +TE+E DG + + + F P +
Sbjct: 1450 LVKYMPEQKITEIEDGQDGGVTPYSNES-------GLVNADLDVKDELMFSPLVDSGSND 1502
Query: 76 PESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPF 111
+ +Y TSP +SPG
Sbjct: 1503 AMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVS 1538
>1zcl_A Protein tyrosine phosphatase 4A1; PRL-1 PTP4A dual specific
phosphatase, hydrolase; 2.90A {Rattus norvegicus} PDB:
1x24_A
Length = 180
Score = 27.6 bits (61), Expect = 1.5
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 27 EVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSLV 63
VE+ MR + +P T+ + E K + +
Sbjct: 29 PVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTI 65
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5
Length = 542
Score = 27.7 bits (60), Expect = 1.5
Identities = 7/48 (14%), Positives = 19/48 (39%)
Query: 86 PDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTM 133
P Y +++ + + PGS ++ + +E + + + M
Sbjct: 417 PRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYM 464
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI,
protein structure initiative; 1.80A {Bacillus subtilis}
SCOP: b.29.1.23 b.67.2.1
Length = 533
Score = 27.6 bits (60), Expect = 1.6
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 3 DKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSL 62
D++ L L ++ ++ I + + L + +KD +YS + ++ H +
Sbjct: 425 DEELGRILELTICDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKYYYFYSFNKEDWHKI 484
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 27.3 bits (59), Expect = 1.9
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 1 MTDKKQKINLTLIRNLANILNETNLT--EVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKN 58
+T ++K + + +++ + L E+ + +D + L + Q T YS D N
Sbjct: 423 ITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMN 482
Query: 59 NHSL 62
L
Sbjct: 483 WIDL 486
>3dmg_A Probable ribosomal RNA small subunit methyltransferase;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A*
Length = 381
Score = 27.2 bits (59), Expect = 2.2
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 89 YHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE 120
YH +T L PG+ + + + +++
Sbjct: 8 YHRLTPLPHPGGRLFIKPGARGYRDPVHDLLQ 39
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target
T1997, PSI, protein structure initiative; 2.00A
{Bacillus halodurans c-125} SCOP: b.29.1.23 b.67.2.1
Length = 528
Score = 26.9 bits (58), Expect = 2.6
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 3 DKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNHSL 62
+++ L +I+ +E + + + + + L ++T+ Y+ ++ +
Sbjct: 419 HEEKGKCLQIIQTKGGNYDELLASPIPLAEEK-AVYLKGRIHRETMHLYFKQEGEAEWQP 477
Query: 63 VG 64
VG
Sbjct: 478 VG 479
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388,
selenomethionine SAD, unknown function; 2.00A
{Staphylococcus aureus subsp}
Length = 370
Score = 26.6 bits (58), Expect = 3.1
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 5/114 (4%)
Query: 2 TDKKQKINLTLIRNLANILN-ETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60
+ I LI++ N++ TNL + M +++ + + +
Sbjct: 81 ANGYGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLAKVMGL----KNISIINNQQDVYY 136
Query: 61 SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNK 114
+ + P + + L NY G ++P + +
Sbjct: 137 KVQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQ 190
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43,
alpha-L- arabinofuranosidase; HET: B3P; 1.30A
{Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A*
Length = 538
Score = 26.5 bits (57), Expect = 3.7
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 1 MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60
++K +I + + E+ I ++ + S + YS D + H
Sbjct: 427 WNEEKGRIIDLVTADNGTFSMPLAGAEIPIPDEVKTVHFKVSVRGRIYQYAYSFDGETFH 486
Query: 61 SL 62
+L
Sbjct: 487 TL 488
>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base,
hypervariable tower, viral protein; 2.10A {Simian
adenovirus 25} PDB: 1p2z_A* 1p30_A 2bvi_F
Length = 932
Score = 26.2 bits (58), Expect = 3.9
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 46 DTVTNYYSEDNKNNHSLVGFPPSSTIDNTP-PESDLIPLLSPDNYHTVT-SPMVGTAYLA 103
NN VG+ + P P + PL+ +VT + +
Sbjct: 792 KDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPANYPYPLIGKSAVTSVTQKKFLCDRVMW 851
Query: 104 SSPGSDPFVNKGNLVVEGQTLLIIEAMKTMN 134
P S F++ G L GQ +L + ++
Sbjct: 852 RIPFSSNFMSMGALTDLGQNMLYANSAHALD 882
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.12A {Bacteroides fragilis nctc 9343}
Length = 430
Score = 26.0 bits (57), Expect = 5.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 84 LSPDNYHTVTSPMVGTAYLASSPGS 108
L+ + YH G + +S GS
Sbjct: 43 LARERYHMDGEYPAGGPEIVTSGGS 67
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron
transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR
TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP:
b.2.6.1 b.84.2.2 f.23.23.1
Length = 292
Score = 25.5 bits (56), Expect = 6.0
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 99 TAYLASSPGSDPFVNKGNLVVE--GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVE 156
T Y AS+ G + + E G + IE +V D+ VK+GQ+V+
Sbjct: 169 TIYNASAAGK---IVAITALSEKKGGFEVSIEKAN--GEVVVDKIPAGPDLIVKEGQTVQ 223
Query: 157 YGDAL 161
L
Sbjct: 224 ADQPL 228
>3mxu_A Glycine cleavage system H protein; seattle structural genomics
center for infectious disease, S CAT-scratch disease,
bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Length = 143
Score = 25.6 bits (56), Expect = 6.2
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 97 VG-TAYLASSPGSDPFV---NKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
VG T Y G F+ G + +G ++E++K + + AP G+V +IN
Sbjct: 43 VGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEIN 98
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit;
HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1
b.84.2.2 PDB: 1tu2_B*
Length = 249
Score = 25.4 bits (56), Expect = 6.7
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 40/136 (29%)
Query: 52 YSEDNKNNHSLVGFPPSSTIDNTPPESDLI-PLLSPD-----NYHTVTSPM-VG------ 98
Y++D +N LVG P +++ P+LSP+ + + +G
Sbjct: 106 YADDKQNI-VLVGPLPGDEY------EEIVFPVLSPNPATNKSVAFGKYSIHLGANRGRG 158
Query: 99 -----------TAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMK--TMNHIVAPCSGKVQ 145
Y AS+ G + +G + I T+ + G
Sbjct: 159 QIYPTGEKSNNAVYNASAAGV---ITAIAKADDGSAEVKIRTEDGTTIVDKIPA--GP-- 211
Query: 146 DINVKDGQSVEYGDAL 161
++ V +G+ V G AL
Sbjct: 212 ELIVSEGEEVAAGAAL 227
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D*
1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 25.5 bits (55), Expect = 6.9
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 103 ASSPGSDPFVNKGNLVVE-----GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEY 157
A P + +++ + VV + + +E+ P K + VKDG VE
Sbjct: 1265 ARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLP---KEARLLVKDGDYVEA 1321
Query: 158 GDAL 161
G L
Sbjct: 1322 GQPL 1325
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich
structure, structural genomics, riken structural
genomics/proteomics initiative; 2.50A {Thermus
thermophilus} SCOP: b.84.1.1
Length = 128
Score = 25.2 bits (55), Expect = 8.0
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 99 TAYLASSPGSDPFV---NKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
T Y + G +V G +V +G+ + ++E++KT + I AP +G++ ++N
Sbjct: 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN 80
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport;
HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Length = 249
Score = 25.0 bits (55), Expect = 8.4
Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 35/133 (26%)
Query: 52 YSEDNKNNHSLVGFPPSSTIDNTPPESDLIPLLSPD-----NYHTVTSPM-VG------- 98
YSE N L G P + P+LSP+ + + +G
Sbjct: 107 YSET-DENILLAGPLPGEDYQEM-----IFPILSPNPATDAGVYFGKYSIHLGGNRGRGQ 160
Query: 99 ----------TAYLASSPGSDPFVNKGNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDIN 148
A+ AS G+ + G + I ++
Sbjct: 161 VYPTGELSNNNAFSASIAGT---IAAIEDNGFGFDVTIQPEDGDAVVTSIL---PGPELI 214
Query: 149 VKDGQSVEYGDAL 161
V G +VE G L
Sbjct: 215 VAVGDTVEAGQLL 227
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.311 0.131 0.366
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,392,079
Number of extensions: 60344
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 64
Length of query: 171
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 85
Effective length of database: 3,608,246
Effective search space: 306700910
Effective search space used: 306700910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)