BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin
carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus
str. psy62]
         (171 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 171

 Score =  347 bits (890), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60
           MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH
Sbjct: 1   MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60

Query: 61  SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE 120
           SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE
Sbjct: 61  SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE 120

Query: 121 GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK 171
           GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK
Sbjct: 121 GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK 171


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score = 29.6 bits (65), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161
           G  V  G+ L+ +E  K    + +P SGK+ +++V  G +V YG  L
Sbjct: 45  GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFL 91


>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 333

 Score = 23.1 bits (48), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 142 GKVQDINVKDGQSVEYGDALLVLEKTG 168
           G +Q  +++D Q + +GD  + +E TG
Sbjct: 72  GPIQVTSIRDPQDLPWGDVDVAMECTG 98


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.311    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,158
Number of Sequences: 1233
Number of extensions: 4777
Number of successful extensions: 9
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 171
length of database: 328,796
effective HSP length: 68
effective length of query: 103
effective length of database: 244,952
effective search space: 25230056
effective search space used: 25230056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 35 (18.1 bits)