BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus str. psy62] (171 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 347 bits (890), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60 MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH Sbjct: 1 MTDKKQKINLTLIRNLANILNETNLTEVEIDNDGMRIRLLRSPQKDTVTNYYSEDNKNNH 60 Query: 61 SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE 120 SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE Sbjct: 61 SLVGFPPSSTIDNTPPESDLIPLLSPDNYHTVTSPMVGTAYLASSPGSDPFVNKGNLVVE 120 Query: 121 GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK 171 GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK Sbjct: 121 GQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDALLVLEKTGDNK 171 >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 29.6 bits (65), Expect = 0.027, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161 G V G+ L+ +E K + +P SGK+ +++V G +V YG L Sbjct: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFL 91 >gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 23.1 bits (48), Expect = 2.8, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 142 GKVQDINVKDGQSVEYGDALLVLEKTG 168 G +Q +++D Q + +GD + +E TG Sbjct: 72 GPIQVTSIRDPQDLPWGDVDVAMECTG 98 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.311 0.131 0.366 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,158 Number of Sequences: 1233 Number of extensions: 4777 Number of successful extensions: 9 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 4 length of query: 171 length of database: 328,796 effective HSP length: 68 effective length of query: 103 effective length of database: 244,952 effective search space: 25230056 effective search space used: 25230056 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 35 (18.1 bits)