HHsearch alignment for GI: 254780268 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.93 E-value=1e-24 Score=196.00 Aligned_cols=248 Identities=23% Similarity=0.319 Sum_probs=187.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-CCCHHHCCHHHH
Q ss_conf 9999998888096599985855771877675857999189985300069899999998709989945-853131097666
Q gi|254780268|r 14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-GYGFLSENAKFA 92 (443)
Q Consensus 14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-GyGfLsEn~~fa 92 (443)
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~--------~----~~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLW----------MLDKEV--------T----KRVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCEE----------EECCCH--------H----HHHHCCCCEEEEECCCCCCCCCHHH
T ss_conf 89999987614871588732466327----------850310--------1----2220269877871558888870699
Q ss_pred HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 8898459216268989998721899887766422443324333455----799987320033012200023457821688
Q gi|254780268|r 93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----PHTAMPIAKEIGFPVLVKASAGGGGRGMRI 168 (443)
Q Consensus 93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v 168 (443)
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~ 160 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSP 160 (317)
T ss_pred HHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEE
T ss_conf 99997099876076445332350999988998678651235675334520478887741468878998587311367998
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCC----------CCCCCCCCCCCCCEEE
Q ss_conf 8750668999998754321258998168844342011033157773478-7023----------6566542113562255
Q gi|254780268|r 169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIH----------FGERDCSVQRRNQKIW 237 (443)
Q Consensus 169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~----------l~erdCSiQrr~qkii 237 (443)
T Consensus 161 v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~g-g~~ 232 (317)
T COG1181 161 VNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTG-GAQ 232 (317)
T ss_pred CCEECCHHHHHHHHHHH------CCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCC-CCE
T ss_conf 83504369999999984------78512003776-65589863588655244476168169986986000145789-843
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCC
Q ss_conf 40344558899999999999998865154341024589728--83499822765433
Q gi|254780268|r 238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQV 292 (443)
Q Consensus 238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqv 292 (443)
T Consensus 233 ~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~ 288 (317)
T COG1181 233 YDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM 288 (317)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 53788-999889999999999999860888758887999878998999987089987