HHsearch alignment for GI: 254780268 and conserved domain: COG1181

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.93  E-value=1e-24  Score=196.00  Aligned_cols=248  Identities=23%  Similarity=0.319  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEEC-CCCHHHCCHHHH
Q ss_conf             9999998888096599985855771877675857999189985300069899999998709989945-853131097666
Q gi|254780268|r   14 ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHP-GYGFLSENAKFA   92 (443)
Q Consensus        14 a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihP-GyGfLsEn~~fa   92 (443)
T Consensus        23 a~~v~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~--------~----~~~~~~~~vvfp~lhG~~gEDg~iq   80 (317)
T COG1181          23 AKAVLRALKGFGYDVTPVDITEAGLW----------MLDKEV--------T----KRVLQKADVVFPVLHGPYGEDGTIQ   80 (317)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCEE----------EECCCH--------H----HHHHCCCCEEEEECCCCCCCCCHHH
T ss_conf             89999987614871588732466327----------850310--------1----2220269877871558888870699


Q ss_pred             HHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHHCCCCHHHHHCCCCCCCCEEEE
Q ss_conf             8898459216268989998721899887766422443324333455----799987320033012200023457821688
Q gi|254780268|r   93 EILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVY----PHTAMPIAKEIGFPVLVKASAGGGGRGMRI  168 (443)
Q Consensus        93 ~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~----~~ea~~~a~~iGyPviiKp~~gGGG~Gi~v  168 (443)
T Consensus        81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~  160 (317)
T COG1181          81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSP  160 (317)
T ss_pred             HHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEE
T ss_conf             99997099876076445332350999988998678651235675334520478887741468878998587311367998


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCC-CCCC----------CCCCCCCCCCCCCEEE
Q ss_conf             8750668999998754321258998168844342011033157773478-7023----------6566542113562255
Q gi|254780268|r  169 AYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMG-NAIH----------FGERDCSVQRRNQKIW  237 (443)
Q Consensus       169 v~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g-~~v~----------l~erdCSiQrr~qkii  237 (443)
T Consensus       161 v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~g-g~~  232 (317)
T COG1181         161 VNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTG-GAQ  232 (317)
T ss_pred             CCEECCHHHHHHHHHHH------CCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCC-CCE
T ss_conf             83504369999999984------78512003776-65589863588655244476168169986986000145789-843


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEECCCCCCC
Q ss_conf             40344558899999999999998865154341024589728--83499822765433
Q gi|254780268|r  238 EEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYEN--GQFYFIEMNTRLQV  292 (443)
Q Consensus       238 EeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~--~~~yflEvN~Rlqv  292 (443)
T Consensus       233 ~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~  288 (317)
T COG1181         233 YDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM  288 (317)
T ss_pred             EECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf             53788-999889999999999999860888758887999878998999987089987