HHsearch alignment for GI: 254780268 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=100.00 E-value=8.5e-35 Score=267.51 Aligned_cols=246 Identities=23% Similarity=0.362 Sum_probs=199.3
Q ss_pred CCEEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHH
Q ss_conf 9706866447099---------9999998888096599985855771877675857999189985300069899999998
Q gi|254780268|r 1 MISKILIANRGEI---------ALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACE 71 (443)
Q Consensus 1 m~~~iLianrGei---------a~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~ 71 (443)
T Consensus 3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~-----------------------------~~~~l~ 53 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------PAAELK 53 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------------HHHHHH
T ss_conf 777189993678712899999999999988375997999828964-----------------------------677875
Q ss_pred HCCCCE----EECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 709989----9458531310976668898459216268989998721899887766422443324333455799987320
Q gi|254780268|r 72 VTGADA----IHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAK 147 (443)
Q Consensus 72 ~~~~da----ihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~~ea~~~a~ 147 (443)
T Consensus 54 ~~~~D~vf~~lHG~~G---EDG~iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~ 130 (304)
T PRK01372 54 ELGFDRVFNALHGRGG---EDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAID 130 (304)
T ss_pred HCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf 3399999990689998---5649999999859983579989987765389999999986999898499865313999987
Q ss_pred CCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCC-
Q ss_conf 0330122000234578216888750668999998754321258998168844342011033157773478702365665-
Q gi|254780268|r 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERD- 226 (443)
Q Consensus 148 ~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erd- 226 (443)
T Consensus 131 ~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~a~~~------~~~vLvE~~I~G-rEitv~Vlg~~---~lp~~eI~~ 200 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVTKVKEADELPAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGK---ALPVIRIVP 200 (304)
T ss_pred HHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEEEEECC-EEEEEEEECCC---CCCEEEEEC
T ss_conf 61898799766888666538966988999999998744------886254502565-69999998997---775389945
Q ss_pred ----CCCCCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECCCC
Q ss_conf ----4211356--22554034455889999999999999886515434102458972-883499822765
Q gi|254780268|r 227 ----CSVQRRN--QKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMNTR 289 (443)
Q Consensus 227 ----CSiQrr~--qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN~R 289 (443)
T Consensus 201 ~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~g~aRvDf~~~~~g~~~~lEiNt~ 269 (304)
T PRK01372 201 PGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALALRAYKALGCRGWGRVDFMLDEDGKPYLLEVNTS 269 (304)
T ss_pred CCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf 99875776612557741100689-9999999999999999998499736988999907997899983399