HHsearch alignment for GI: 254780268 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=100.00 E-value=3.3e-32 Score=249.15 Aligned_cols=275 Identities=21% Similarity=0.283 Sum_probs=196.0
Q ss_pred CEEEEEECCC-----HH----HHHHHHHHHHCCCEEEEECCCHHHCCC-------CHHHCCEEEECCCCCCCCHHCCHHH
Q ss_conf 7068664470-----99----999999888809659998585577187-------7675857999189985300069899
Q gi|254780268|r 2 ISKILIANRG-----EI----ALRILRACKELGIPTVAVHSTADSGAM-------HVRLADESVCIGPPSSKDSYLNIQQ 65 (443)
Q Consensus 2 ~~~iLianrG-----ei----a~riira~~elGi~tv~v~s~~D~~a~-------~~~~ADe~~~i~~~~~~~sYldi~~ 65 (443)
T Consensus 3 k~kI~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (344)
T PRK01966 3 KIRVALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEK-KSAELLLALPG 81 (344)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 76899995878821899999999999976150885999998379887725641111024542101234-44322234553
Q ss_pred HHHHHHHCCCC----EEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCH--
Q ss_conf 99999870998----994585313109766688984592162689899987218998877664224433243334557--
Q gi|254780268|r 66 IVAACEVTGAD----AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-- 139 (443)
Q Consensus 66 ii~~a~~~~~d----aihPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~~~-- 139 (443)
T Consensus 82 ~~~~~~~~~~D~vf~alHG~~G---EDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~ 158 (344)
T PRK01966 82 FYEGQLIIEVDVVFPVLHGPPG---EDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRR 158 (344)
T ss_pred CCCCCCCCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 2210003567899990689997---6709999999759993688489999876699999999987999898399816662
Q ss_pred -HHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCEEEEEECCCC
Q ss_conf -9998732003301220002345782168887506689999987543212589981688443420110331577734787
Q gi|254780268|r 140 -HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIFGDGMGN 218 (443)
Q Consensus 140 -~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~~~rhiEvqVl~D~~g~ 218 (443)
T Consensus 159 ~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~~------~~~vlvEefI~G-rE~tv~vl~~~-~~ 230 (344)
T PRK01966 159 EEAIAEVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFEY------DRKVLVEQGIKG-REIECAVLGYN-DE 230 (344)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHC------CCCCEEECCCCC-EEEEEEEECCC-CC
T ss_conf 34589999861898799328996343259968999999999999863------975057512444-89999997489-94
Q ss_pred CCCCC--CCC-----CCCCCCCC---EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEECC
Q ss_conf 02365--665-----42113562---2554034455889999999999999886515434102458972-8834998227
Q gi|254780268|r 219 AIHFG--ERD-----CSVQRRNQ---KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYE-NGQFYFIEMN 287 (443)
Q Consensus 219 ~v~l~--erd-----CSiQrr~q---kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~-~~~~yflEvN 287 (443)
T Consensus 231 ~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~~g~~y~lEvN 309 (344)
T PRK01966 231 PVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPA-DLSEELTEQIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEIN 309 (344)
T ss_pred EEEECCEEECCCCCCCCHHHCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf 6773115871798751488810468971696678-899999999999999999981997279898999089988999820
Q ss_pred CC
Q ss_conf 65
Q gi|254780268|r 288 TR 289 (443)
Q Consensus 288 ~R 289 (443)
T Consensus 310 t~ 311 (344)
T PRK01966 310 TL 311 (344)
T ss_pred CC
T ss_conf 89