HHsearch alignment for GI: 254780268 and conserved domain: TIGR00768
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.83 E-value=9.8e-19 Score=153.44 Aligned_cols=270 Identities=19% Similarity=0.236 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECCC----CHHHC
Q ss_conf 99999999888809659998585577187767585799918998530006989999999870998994585----31310
Q gi|254780268|r 12 EIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPGY----GFLSE 87 (443)
Q Consensus 12 eia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPGy----GfLsE 87 (443)
T Consensus 18 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~I~~~~~~--~~~--------~~~~~~~d~~~~R~~TPWv~~~~ 86 (321)
T TIGR00768 18 YDEKMLKEAAEERGIDYKVVTPPEIVLTFN-QPAAFSIFYKEPR--KNK--------ELALAELDVVIVRIGTPWVSSFR 86 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHEECCC-CCCCCEEECCCCC--CCC--------HHHHCCCCEEEECCCCCCCCHHH
T ss_conf 899999999997179536760412200368-8851001114541--001--------02311788899838997511026
Q ss_pred CHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHCCC---CHHHHH
Q ss_conf 97666889845921626898999872189988776642244332433345--------5799987320033---012200
Q gi|254780268|r 88 NAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEV--------YPHTAMPIAKEIG---FPVLVK 156 (443)
Q Consensus 88 n~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~~~~~--------~~~ea~~~a~~iG---yPviiK 156 (443)
T Consensus 87 ~~~~~r~lE~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~K 165 (321)
T TIGR00768 87 GLAVLRALESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLK 165 (321)
T ss_pred HHHHHHHHHHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8899999985896310-706998621465899999995868987335736632243589889999998731764245871
Q ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--EEEE--CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 0234578216888750668999998754321258998168844342--0110--33157773478702365665421135
Q gi|254780268|r 157 ASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLE--NPRH--IEVQIFGDGMGNAIHFGERDCSVQRR 232 (443)
Q Consensus 157 p~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd~~vlvEk~i~--~~rh--iEvqVl~D~~g~~v~l~erdCSiQrr 232 (443)
T Consensus 166 p~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~--~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~---v~aA------~~R~ 234 (321)
T TIGR00768 166 PVFGSWGRLVSLARDKQAAETLLEHFEQLNG--PQYKVFLVQEYIKPVKPGGRDIRVFVVGDE---VVAA------IYRI 234 (321)
T ss_pred CCCCCCCCEEEEEECHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCEEEEEEECCC---EEEE------EEEC
T ss_conf 7856354268985067899999999972188--332357887201132578931899998892---0133------3541
Q ss_pred CC---------EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----CEEEEECCCCCCCCCHHHH
Q ss_conf 62---------255403445588999999999999988651543410245897288-----3499822765433201678
Q gi|254780268|r 233 NQ---------KIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENG-----QFYFIEMNTRLQVEHPVTE 298 (443)
Q Consensus 233 ~q---------kiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tvEFl~~~~-----~~yflEvN~Rlqveh~vte 298 (443)
T Consensus 235 ~~~~~w~~N~a~GG~a~~~-~l~~e----~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN~~~--~f~~~~ 306 (321)
T TIGR00768 235 ITSGHWRTNLARGGKAEPC-SLTEE----IEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVNANP--EFKNSV 306 (321)
T ss_pred CCCCCHHHHHHCCCCCCCC-CCCHH----HHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEECCCC--CCCCCE
T ss_conf 7883024355438821245-25889----99999999999768-3489977662685425783799984997--700111
Q ss_pred HHHCCCCHHHHHHH
Q ss_conf 86325620112322
Q gi|254780268|r 299 AITGIDLVHEQIYV 312 (443)
Q Consensus 299 ~~tgvdlv~~~~~~ 312 (443)
T Consensus 307 ~~tgvniA~~l~~y 320 (321)
T TIGR00768 307 KTTGVNIAGKLLDY 320 (321)
T ss_pred EECCCCHHHHHHHH
T ss_conf 11167768999971