HHsearch alignment for GI: 254780268 and conserved domain: pfam00289
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=100.00 E-value=7.7e-36 Score=274.91 Aligned_cols=109 Identities=62% Similarity=0.958 Sum_probs=107.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf 70686644709999999988880965999858557718776758579991899853000698999999987099899458
Q gi|254780268|r 2 ISKILIANRGEIALRILRACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIHPG 81 (443)
Q Consensus 2 ~~~iLianrGeia~riira~~elGi~tv~v~s~~D~~a~~~~~ADe~~~i~~~~~~~sYldi~~ii~~a~~~~~daihPG 81 (443)
T Consensus 1 i~kvLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG 80 (109)
T pfam00289 1 IKKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG 80 (109)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 94899988879999999999986997999963344152256650576534799832111379999999998188968779
Q ss_pred CCHHHCCHHHHHHHHHCCCEEECCCHHHH
Q ss_conf 53131097666889845921626898999
Q gi|254780268|r 82 YGFLSENAKFAEILEDHHIKFIGPSSEHI 110 (443)
Q Consensus 82 yGfLsEn~~fa~~~e~~Gi~fIGPs~~ai 110 (443)
T Consensus 81 yGflsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 81 YGFLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred CCCCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 76233599999999988898999583549