HHsearch alignment for GI: 254780268 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=0 Score=382.75 Aligned_cols=206 Identities=45% Similarity=0.710 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899887766422443324333--455799987320033012200023457821688875066899999875432125899
Q gi|254780268|r 115 DKITAKKTAQQLGIPVVPGSG--EVYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGN 192 (443)
Q Consensus 115 DK~~~k~~a~~~GVP~~p~~~--~~~~~ea~~~a~~iGyPviiKp~~gGGG~Gi~vv~~~~el~~a~~~a~~ea~~~fgd 192 (443)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 81688443420110331577734787023656654211356225540344558899999999999998865154341024
Q gi|254780268|r 193 DAVYIEKYLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVKAMKKIDYRGAGTI 272 (443)
Q Consensus 193 ~~vlvEk~i~~~rhiEvqVl~D~~g~~v~l~erdCSiQrr~qkiiEeaPap~l~~~~~~~i~~~A~~~~~~~g~~g~~tv 272 (443)
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~G~~~v 160 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTV 160 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEECCCEE
T ss_conf 83899740477658999999827998999996332250335844468179999999999999999998752644233247
Q ss_pred EEEEC--CCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 58972--8834998227654332016788632562011232221022222
Q gi|254780268|r 273 EFLYE--NGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLSV 320 (443)
Q Consensus 273 EFl~~--~~~~yflEvN~Rlqveh~vte~~tgvdlv~~~~~~a~g~~l~~ 320 (443)
T Consensus 161 ef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e 210 (211)
T pfam02786 161 EFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPE 210 (211)
T ss_pred EEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 89996799959999670896834778899879489999999977999786