HHsearch alignment for GI: 254780268 and conserved domain: pfam09370
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=92.51 E-value=0.95 Score=25.69 Aligned_cols=113 Identities=20% Similarity=0.357 Sum_probs=77.8
Q ss_pred CCCHHCCHHHHHHHHHHCCCCEE--ECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC
Q ss_conf 53000698999999987099899--4585313109766688984592162689899987218998877664224433243
Q gi|254780268|r 56 SKDSYLNIQQIVAACEVTGADAI--HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPG 133 (443)
Q Consensus 56 ~~~sYldi~~ii~~a~~~~~dai--hPGyGfLsEn~~fa~~~e~~Gi~fIGPs~~ai~~~gDK~~~k~~a~~~GVP~~p~ 133 (443)
T Consensus 90 ~tDP~~~~~~~L~~l~~~GfsGV~NfPTvgli--dG~fR~~LEetGmgy----~~E-------VEmIr~A~~~dl~T~~y 156 (268)
T pfam09370 90 GTDPFRDMDRFLDELKEMGFAGVQNFPTVGLI--DGEFRQNLEETGMGY----DLE-------VEMIRLAHEKGLLTTPY 156 (268)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCEEEE--CCHHHHHHHHCCCCH----HHH-------HHHHHHHHHCCCCCCCE
T ss_conf 88974529999999997197744438822033--518887788808867----999-------99999999779833313
Q ss_pred CCCCCHHHHHHHHHCCCCHHHHH--CCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 33455799987320033012200--0234578216888750668999998754
Q gi|254780268|r 134 SGEVYPHTAMPIAKEIGFPVLVK--ASAGGGGRGMRIAYSENDLSEAIDQARS 184 (443)
Q Consensus 134 ~~~~~~~ea~~~a~~iGyPviiK--p~~gGGG~Gi~vv~~~~el~~a~~~a~~ 184 (443)
T Consensus 157 v--f~~e~a~~Ma-~AGaDiIv~H~GlT~gG~iG~~~a~sl~~a~~~~~~i~~ 206 (268)
T pfam09370 157 V--FNVEEARAMA-EAGADIIVAHMGLTTGGTIGADTALSLDDCVELINAIAR 206 (268)
T ss_pred E--CCHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2--6899999999-749989997677677767467776789999999999999