PSIBLAST alignment of GI: 254780268 and protein with PDB id: 1jdb

gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp Length = 1073
 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 124/388 (31%), Gaps = 50/388 (12%)

Query: 20  ACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79
           A +E G  T+ V+   ++ +     +D               ++ +IV   +  G    +
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE-----DVLEIVRIEKPKGVIVQY 642

Query: 80  PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP 139
            G   L    K A  LE   +  IG S + I    D+   +   ++L +     +     
Sbjct: 643 GGQTPL----KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAI 698

Query: 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK 199
             A+  AKEIG+P++V+ S   GGR M I Y E DL      A S +  A      +++ 
Sbjct: 699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD 758

Query: 200 YLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVK 259
            +E             +G  +   E+       +           +S + +  + +   K
Sbjct: 759 AVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT---LSQEIQDVMRQQVQK 815

Query: 260 AMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLS 319
              ++  RG   ++F  +N + Y IE+N R     P     TG+ L      V       
Sbjct: 816 LAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARV------- 868

Query: 320 VQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYD 379
                        E  +  E          +          G+                D
Sbjct: 869 ------MAGKSLAEQGVTKEVI--PPYYSVKEVVLPFNKFPGV----------------D 904

Query: 380 SLI-------AKLIVHGKNRKECMMRLN 400
            L+        +++  G+   E   +  
Sbjct: 905 PLLGPEMRSTGEVMGVGRTFAEAFAKAQ 932