PSIBLAST alignment of GI: 254780268 and protein with PDB id: 1jdb
gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073
>gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp Length = 1073
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 68/388 (17%), Positives = 124/388 (31%), Gaps = 50/388 (12%)
Query: 20 ACKELGIPTVAVHSTADSGAMHVRLADESVCIGPPSSKDSYLNIQQIVAACEVTGADAIH 79
A +E G T+ V+ ++ + +D ++ +IV + G +
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE-----DVLEIVRIEKPKGVIVQY 642
Query: 80 PGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP 139
G L K A LE + IG S + I D+ + ++L + +
Sbjct: 643 GGQTPL----KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAI 698
Query: 140 HTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEK 199
A+ AKEIG+P++V+ S GGR M I Y E DL A S + A +++
Sbjct: 699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD 758
Query: 200 YLENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGETCVK 259
+E +G + E+ + +S + + + + K
Sbjct: 759 AVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT---LSQEIQDVMRQQVQK 815
Query: 260 AMKKIDYRGAGTIEFLYENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRLS 319
++ RG ++F +N + Y IE+N R P TG+ L V
Sbjct: 816 LAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARV------- 868
Query: 320 VQQKDITFSGHAIECRINAEDPENFIPNPGEITYFHAPGGLGIRMDSASYQGYTVPSYYD 379
E + E + G+ D
Sbjct: 869 ------MAGKSLAEQGVTKEVI--PPYYSVKEVVLPFNKFPGV----------------D 904
Query: 380 SLI-------AKLIVHGKNRKECMMRLN 400
L+ +++ G+ E +
Sbjct: 905 PLLGPEMRSTGEVMGVGRTFAEAFAKAQ 932