HHsearch alignment for GI: 254780269 and conserved domain: TIGR00667
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0016755 transferase activity transferring amino-acyl groups, 0030163 protein catabolic process.
Probab=100.00 E-value=5.5e-41 Score=271.84 Aligned_cols=166 Identities=35% Similarity=0.679 Sum_probs=157.2
Q ss_pred CCCCEEEEECCCCCEEEEH----HHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC---CCCCCCCHHHHHHHHH
Q ss_conf 7887078873996187424----44611745776521588168766988999999850266---8899872699999999
Q gi|254780269|r 5 ANSQDISWIKPLRRGIIPL----ETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQ---KRPTTWINMTIQKAYI 77 (179)
Q Consensus 5 ~d~~~i~WwsP~~R~il~~----~~~hisrsLrk~lrk~~~~itin~~F~~VI~~Ca~~r~---~~~~TWI~~~i~~aY~ 77 (179)
T Consensus 20 ~~~~~~~w~~~~p~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~~~pg~p~~~~~w~~~~~~~~~~ 99 (212)
T TIGR00667 20 DPGDGLLWWSPDPRAALWPLTEDDGLHPAKSLKRFLKKNPFRVSVNLAFGEVIEGCAGDRPGSPERDGTWLSDELVEAYH 99 (212)
T ss_pred CCCCCCEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 68885100267864212002343221025778887640444100234567888654204788842000244578999988
Q ss_pred HHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCEE
Q ss_conf 99864982699996537201211023205721200344525768999999999999968973999075893477119798
Q gi|254780269|r 78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIE 157 (179)
Q Consensus 78 ~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t~HL~slGa~~ 157 (179)
T Consensus 100 ~~~~~g~~~~~~~w~g~~~~gg~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~g~~~ 179 (212)
T TIGR00667 100 ELHELGWAHSFEVWQGDELAGGLLGLALGGLFCGESLFSRLTNASKVALLYLCEHLDRHGGQLLDCQLLNPHLASLGAYE 179 (212)
T ss_pred HHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHCCCHHHHCCCCC
T ss_conf 88763020000001320122024433431234322344320121157888888876302420000111040233303311
Q ss_pred ECHHHHHHHHHHH
Q ss_conf 3699999999999
Q gi|254780269|r 158 ITHVQYAKLLENA 170 (179)
Q Consensus 158 i~r~~fl~~L~~a 170 (179)
T Consensus 180 ~~~~~~~~~~~~~ 192 (212)
T TIGR00667 180 VPDKDYKNYLNQK 192 (212)
T ss_pred CCHHHHHHHHHHH
T ss_conf 2157788777688